Wall clock time and date at job start Tue Mar 31 2020 11:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00486 * 2 1 4 4 C 1.53004 * 109.47396 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47152 * 64.99651 * 4 3 2 6 6 C 1.46499 * 119.99926 * 92.43119 * 5 4 3 7 7 C 1.50701 * 109.47130 * 70.62414 * 6 5 4 8 8 H 1.08000 * 119.99701 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99832 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00006 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99859 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47258 * 59.99927 * 11 9 7 13 13 H 1.48499 * 109.46978 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47087 * 299.99787 * 11 9 7 15 15 C 1.34775 * 119.99617 * 272.42722 * 5 4 3 16 16 O 1.21562 * 120.00486 * 1.45584 * 15 5 4 17 17 C 1.47773 * 119.99619 * 181.45897 * 15 5 4 18 18 C 1.39633 * 120.14563 * 32.94624 * 17 15 5 19 19 C 1.37896 * 119.91452 * 179.76919 * 18 17 15 20 20 C 1.38395 * 120.21119 * 0.51469 * 19 18 17 21 21 C 1.38466 * 120.28722 * 359.73882 * 20 19 18 22 22 F 1.35102 * 119.96052 * 179.97438 * 21 20 19 23 23 C 1.38375 * 120.08510 * 0.02562 * 21 20 19 24 24 Cl 1.73599 * 120.10862 * 180.02562 * 23 21 20 25 25 H 1.09003 * 109.46761 * 60.00012 * 1 2 3 26 26 H 1.08997 * 109.47409 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46585 * 300.00590 * 1 2 3 28 28 H 1.08994 * 109.47351 * 59.99794 * 3 2 1 29 29 H 1.09006 * 109.46918 * 299.99752 * 3 2 1 30 30 H 1.08998 * 109.46354 * 304.99724 * 4 3 2 31 31 H 1.08999 * 109.46751 * 184.99950 * 4 3 2 32 32 H 1.09001 * 109.46703 * 190.62401 * 6 5 4 33 33 H 1.08997 * 109.47032 * 310.62496 * 6 5 4 34 34 H 0.96998 * 119.99866 * 180.02562 * 10 9 7 35 35 H 1.08002 * 120.04437 * 0.02562 * 18 17 15 36 36 H 1.08005 * 119.89858 * 180.25622 * 19 18 17 37 37 H 1.07996 * 119.86101 * 179.76659 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9758 0.5642 -1.2528 6 6 4.3376 1.4029 -2.3981 7 6 5.6349 2.1136 -2.1104 8 1 6.1392 1.9566 -1.1684 9 6 6.1774 2.9651 -3.0493 10 7 5.5625 3.1574 -4.1958 11 14 7.7859 3.8456 -2.6930 12 1 8.8565 2.8441 -2.4558 13 1 8.1525 4.6958 -3.8540 14 1 7.6277 4.6963 -1.4862 15 6 4.0479 -0.7781 -1.3508 16 8 3.7225 -1.4747 -0.4092 17 6 4.5226 -1.4029 -2.6029 18 6 5.4898 -0.7649 -3.3822 19 6 5.9328 -1.3545 -4.5473 20 6 5.4143 -2.5720 -4.9526 21 6 4.4511 -3.2097 -4.1891 22 9 3.9491 -4.3978 -4.5912 23 6 4.0013 -2.6312 -3.0153 24 17 2.7943 -3.4305 -2.0573 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 3.8514 0.5681 0.8410 31 1 3.9786 2.1764 0.0889 32 1 4.4542 0.7779 -3.2835 33 1 3.5517 2.1377 -2.5730 34 1 5.9444 3.7561 -4.8565 35 1 5.8933 0.1873 -3.0707 36 1 6.6839 -0.8627 -5.1478 37 1 5.7626 -3.0269 -5.8680 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091440477.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:20 Heat of formation + Delta-G solvation = -97.210772 kcal Electronic energy + Delta-G solvation = -24796.609959 eV Core-core repulsion = 20901.060093 eV Total energy + Delta-G solvation = -3895.549866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.01137 -41.37439 -39.36449 -38.44091 -37.56198 -36.73355 -34.56376 -32.72086 -31.64855 -30.55968 -29.02011 -27.21741 -25.39441 -24.89401 -23.71239 -23.26105 -20.66805 -18.81041 -18.49622 -17.91795 -17.79553 -17.33108 -17.05892 -16.87426 -16.73979 -16.47577 -16.09602 -15.85376 -15.33225 -15.19577 -14.59762 -14.40639 -14.20024 -13.94320 -13.76935 -13.40908 -13.06286 -12.90333 -12.75464 -12.71116 -12.57796 -12.57055 -12.14641 -12.03008 -12.00223 -11.78990 -11.59667 -10.69339 -10.57272 -10.47423 -9.99335 -9.63421 -9.37855 -8.16964 -6.32895 -0.31336 -0.03219 0.99576 1.48921 1.51902 1.57746 1.85610 2.18859 2.43731 2.62218 2.98356 3.06036 3.12382 3.54677 3.89497 3.89868 4.18970 4.24226 4.25836 4.38456 4.45410 4.52502 4.54120 4.63367 4.75318 4.81210 4.93169 4.95851 5.00571 5.19656 5.28728 5.34084 5.67900 5.73644 5.81117 6.05367 6.35957 6.62232 6.83285 7.32099 7.44217 8.87327 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010601 B = 0.006655 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.665222 B = 4206.136623 C = 6341.449054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.398 6.398 3 C 0.050 3.950 4 C 0.122 3.878 5 N -0.588 5.588 6 C 0.229 3.771 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.035 3.965 10 N -0.907 5.907 11 Si 0.951 3.049 12 H -0.269 1.269 13 H -0.284 1.284 14 H -0.275 1.275 15 C 0.550 3.450 16 O -0.546 6.546 17 C -0.119 4.119 18 C -0.090 4.090 19 C -0.093 4.093 20 C -0.104 4.104 21 C 0.078 3.922 22 F -0.130 7.130 23 C -0.047 4.047 24 Cl -0.041 7.041 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.007 0.993 34 H 0.270 0.730 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 -5.590 -0.432 6.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C -0.028 4.028 4 C -0.001 4.001 5 N -0.319 5.319 6 C 0.108 3.892 7 C -0.587 4.587 8 H 0.078 0.922 9 C -0.167 4.167 10 N -0.545 5.545 11 Si 0.777 3.223 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.201 1.201 15 C 0.337 3.663 16 O -0.425 6.425 17 C -0.123 4.123 18 C -0.108 4.108 19 C -0.111 4.111 20 C -0.122 4.122 21 C 0.058 3.942 22 F -0.108 7.108 23 C -0.075 4.075 24 Cl -0.012 7.012 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.079 0.921 35 H 0.189 0.811 36 H 0.186 0.814 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.815 -6.112 -0.024 6.729 hybrid contribution 0.099 0.697 0.133 0.716 sum -2.716 -5.415 0.109 6.059 Atomic orbital electron populations 1.22813 0.80725 1.02807 1.00418 1.88111 1.20342 1.27895 1.95397 1.22986 0.93978 0.84996 1.00835 1.21470 0.92673 0.99525 0.86424 1.47948 1.63934 1.05002 1.15010 1.19809 0.94687 0.89922 0.84735 1.21512 1.07306 1.26957 1.02929 0.92161 1.25543 1.00156 0.96439 0.94566 1.70006 1.40244 1.36937 1.07322 0.85708 0.80203 0.78764 0.77637 1.19396 1.20934 1.20062 1.18153 0.78275 0.82714 0.87140 1.90731 1.49715 1.62318 1.39768 1.19813 1.00519 0.94378 0.97626 1.22675 0.93686 1.00445 0.94021 1.21437 0.99761 0.94047 0.95837 1.21650 0.94453 0.95448 1.00671 1.17339 0.98757 0.84058 0.94041 1.91509 1.86341 1.42958 1.90027 1.21151 0.96966 0.95063 0.94364 1.98375 1.53341 1.78480 1.71011 0.94259 0.89903 0.92522 0.90176 0.93954 0.90889 0.87679 0.92447 0.97480 0.92072 0.81142 0.81352 0.79835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -14.52 9.15 -135.26 -1.24 -15.75 16 3 C 0.05 1.62 6.28 71.98 0.45 2.07 16 4 C 0.12 4.49 5.77 86.38 0.50 4.99 16 5 N -0.59 -24.89 2.52 -829.64 -2.09 -26.98 16 6 C 0.23 10.36 4.69 85.63 0.40 10.76 16 7 C -0.55 -25.79 7.13 25.60 0.18 -25.60 16 8 H 0.06 2.86 7.81 -2.91 -0.02 2.83 16 9 C 0.04 1.67 5.46 84.65 0.46 2.13 16 10 N -0.91 -45.11 13.29 21.45 0.28 -44.83 16 11 Si 0.95 37.86 29.54 68.60 2.03 39.89 16 12 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 13 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 14 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 15 C 0.55 24.05 6.81 86.77 0.59 24.64 16 16 O -0.55 -25.56 13.46 9.81 0.13 -25.43 16 17 C -0.12 -4.78 5.41 -20.07 -0.11 -4.89 16 18 C -0.09 -3.33 7.35 22.53 0.17 -3.17 16 19 C -0.09 -2.66 10.03 22.23 0.22 -2.44 16 20 C -0.10 -2.64 10.02 22.36 0.22 -2.41 16 21 C 0.08 2.44 7.27 22.36 0.16 2.61 16 22 F -0.13 -3.90 16.83 44.97 0.76 -3.14 16 23 C -0.05 -1.74 6.34 22.65 0.14 -1.59 16 24 Cl -0.04 -1.55 26.26 -2.72 -0.07 -1.62 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.07 2.76 7.52 -2.39 -0.02 2.74 16 31 H 0.11 3.65 7.72 -2.39 -0.02 3.63 16 32 H 0.06 2.67 4.09 -2.39 -0.01 2.66 16 33 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 35 H 0.17 7.15 4.14 -2.91 -0.01 7.13 16 36 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.18 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -58.66 330.50 5.55 -53.11 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 1.11 Total: 15.65 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 4.65 Total: 9.12 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -1.81 Total: -71.81 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -1.11 Total: -41.18 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.76 Total: -3.14 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.07 Total: -1.62 kcal Total: -58.66 5.55 -53.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091440477.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.102 kcal (2) G-P(sol) polarization free energy of solvation -58.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds