Wall clock time and date at job start Tue Mar 31 2020 11:03:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.42906 * 113.99393 * 2 1
4 4 C 1.52998 * 109.46433 * 179.97438 * 3 2 1
5 5 N 1.46502 * 109.47308 * 64.99940 * 4 3 2
6 6 C 1.46500 * 119.99629 * 84.41648 * 5 4 3
7 7 C 1.50693 * 109.47407 * 90.00342 * 6 5 4
8 8 H 1.08007 * 120.00152 * 359.97438 * 7 6 5
9 9 C 1.37880 * 120.00041 * 180.02562 * 7 6 5
10 10 N 1.31511 * 120.00217 * 359.97438 * 9 7 6
11 11 Si 1.86804 * 119.99897 * 179.97438 * 9 7 6
12 12 H 1.48505 * 109.47228 * 89.99563 * 11 9 7
13 13 H 1.48505 * 109.46958 * 209.99521 * 11 9 7
14 14 H 1.48500 * 109.47244 * 329.99407 * 11 9 7
15 15 C 1.34770 * 119.99960 * 264.41165 * 5 4 3
16 16 O 1.21569 * 120.00402 * 5.18610 * 15 5 4
17 17 C 1.47692 * 120.00112 * 185.18373 * 15 5 4
18 18 C 1.39654 * 120.15879 * 56.16491 * 17 15 5
19 19 C 1.37975 * 119.86431 * 179.72028 * 18 17 15
20 20 Cl 1.73604 * 119.90564 * 180.27533 * 19 18 17
21 21 C 1.38558 * 120.18906 * 0.55908 * 19 18 17
22 22 C 1.38194 * 120.32624 * 359.71692 * 21 19 18
23 23 C 1.38314 * 120.13369 * 0.02562 * 22 21 19
24 24 F 1.35101 * 120.09950 * 179.97438 * 23 22 21
25 25 H 1.09001 * 109.47547 * 299.99701 * 1 2 3
26 26 H 1.08997 * 109.47612 * 60.00358 * 1 2 3
27 27 H 1.09006 * 109.46781 * 180.02562 * 1 2 3
28 28 H 1.08999 * 109.47078 * 60.00396 * 3 2 1
29 29 H 1.08992 * 109.47054 * 299.99714 * 3 2 1
30 30 H 1.09003 * 109.47662 * 304.99485 * 4 3 2
31 31 H 1.09003 * 109.46860 * 184.99725 * 4 3 2
32 32 H 1.09010 * 109.46681 * 209.99944 * 6 5 4
33 33 H 1.08997 * 109.47316 * 329.99755 * 6 5 4
34 34 H 0.96997 * 120.00128 * 179.97438 * 10 9 7
35 35 H 1.07999 * 120.06873 * 0.02562 * 18 17 15
36 36 H 1.08001 * 119.83720 * 179.69462 * 21 19 18
37 37 H 1.08003 * 119.93398 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3056 0.0000
4 6 3.5353 1.1847 0.0006
5 7 3.9766 0.5640 -1.2509
6 6 4.1704 1.3863 -2.4477
7 6 5.5913 1.8865 -2.4889
8 1 6.2811 1.6190 -1.7020
9 6 6.0107 2.6865 -3.5307
10 7 5.1708 3.0127 -4.4886
11 14 7.7719 3.3071 -3.5813
12 1 8.6190 2.3332 -4.3157
13 1 7.8142 4.6205 -4.2732
14 1 8.2825 3.4611 -2.1954
15 6 4.2043 -0.7634 -1.3010
16 8 3.9539 -1.4600 -0.3367
17 6 4.7580 -1.3718 -2.5276
18 6 5.9650 -0.9098 -3.0567
19 6 6.4797 -1.4865 -4.1997
20 17 7.9836 -0.9178 -4.8543
21 6 5.7967 -2.5142 -4.8297
22 6 4.5988 -2.9737 -4.3162
23 6 4.0732 -2.4089 -3.1682
24 9 2.9019 -2.8583 -2.6670
25 1 -0.3634 0.5138 0.8900
26 1 -0.3634 0.5137 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 1.6885 1.8464 0.8900
29 1 1.6885 1.8464 -0.8899
30 1 3.8508 0.5687 0.8427
31 1 3.9783 2.1767 0.0902
32 1 3.9702 0.7874 -3.3363
33 1 3.4871 2.2350 -2.4201
34 1 5.4657 3.5758 -5.2213
35 1 6.4970 -0.1060 -2.5695
36 1 6.2023 -2.9582 -5.7268
37 1 4.0715 -3.7749 -4.8127
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000103214096.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:03:31
Heat of formation + Delta-G solvation = -102.343976 kcal
Electronic energy + Delta-G solvation = -24970.306475 eV
Core-core repulsion = 21074.534017 eV
Total energy + Delta-G solvation = -3895.772459 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.082 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-48.54314 -39.61114 -38.11916 -37.21269 -35.95480 -35.01543 -32.74606 -31.40340
-29.90591 -29.39036 -27.15867 -26.03813 -23.93643 -23.17873 -22.50089 -21.73053
-19.02138 -17.28995 -16.97858 -16.43670 -16.37992 -16.02808 -15.86538 -15.38348
-15.05547 -14.98265 -14.50531 -14.43190 -13.75951 -13.60048 -13.04485 -12.93000
-12.83267 -12.43354 -12.25004 -12.08343 -11.72429 -11.62430 -11.36234 -11.18742
-10.98743 -10.98341 -10.78702 -10.68799 -10.51794 -10.17834 -9.81279 -9.35517
-9.16736 -8.72240 -8.61021 -8.20245 -7.76599 -6.25651 -4.32989 1.15675
1.43857 2.46688 3.20070 3.27485 3.27804 3.32550 3.68863 3.96654
4.18730 4.28255 4.49740 4.95765 5.03257 5.10684 5.32677 5.39346
5.48137 5.54507 5.63102 5.66312 5.71995 5.84469 5.86099 6.01536
6.10142 6.22391 6.34400 6.45651 6.60447 6.69872 6.99521 7.13998
7.42935 7.56902 7.66488 7.95996 8.25366 8.68746 8.95247 9.33346
10.80253
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.011412 B = 0.006887 C = 0.004748
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2452.967754 B = 4064.393320 C = 5895.433724
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.371 6.371
3 C 0.044 3.956
4 C 0.122 3.878
5 N -0.586 5.586
6 C 0.237 3.763
7 C -0.544 4.544
8 H 0.064 0.936
9 C 0.076 3.924
10 N -0.880 5.880
11 Si 0.881 3.119
12 H -0.269 1.269
13 H -0.285 1.285
14 H -0.272 1.272
15 C 0.566 3.434
16 O -0.541 6.541
17 C -0.138 4.138
18 C -0.017 4.017
19 C -0.054 4.054
20 Cl -0.067 7.067
21 C -0.072 4.072
22 C -0.163 4.163
23 C 0.140 3.860
24 F -0.127 7.127
25 H 0.034 0.966
26 H 0.036 0.964
27 H 0.080 0.920
28 H 0.050 0.950
29 H 0.051 0.949
30 H 0.083 0.917
31 H 0.095 0.905
32 H 0.036 0.964
33 H 0.037 0.963
34 H 0.266 0.734
35 H 0.173 0.827
36 H 0.138 0.862
37 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.177 -5.934 0.856 6.378
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.289 6.289
3 C -0.033 4.033
4 C -0.001 4.001
5 N -0.316 5.316
6 C 0.117 3.883
7 C -0.582 4.582
8 H 0.082 0.918
9 C -0.129 4.129
10 N -0.517 5.517
11 Si 0.708 3.292
12 H -0.194 1.194
13 H -0.211 1.211
14 H -0.196 1.196
15 C 0.352 3.648
16 O -0.420 6.420
17 C -0.142 4.142
18 C -0.036 4.036
19 C -0.081 4.081
20 Cl -0.038 7.038
21 C -0.091 4.091
22 C -0.182 4.182
23 C 0.119 3.881
24 F -0.106 7.106
25 H 0.052 0.948
26 H 0.054 0.946
27 H 0.098 0.902
28 H 0.068 0.932
29 H 0.069 0.931
30 H 0.102 0.898
31 H 0.113 0.887
32 H 0.054 0.946
33 H 0.055 0.945
34 H 0.076 0.924
35 H 0.190 0.810
36 H 0.156 0.844
37 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -2.140 -6.282 1.147 6.735
hybrid contribution 0.545 0.893 -0.384 1.114
sum -1.595 -5.389 0.762 5.672
Atomic orbital electron populations
1.22669 0.82403 1.02173 0.99197 1.88116 1.18356 1.27236 1.95176
1.23037 0.95282 0.85132 0.99889 1.21366 0.91299 0.99450 0.88012
1.48012 1.64252 1.06697 1.12685 1.19451 0.97072 0.90377 0.81391
1.21425 0.96110 1.32011 1.08653 0.91785 1.24858 0.97535 0.95351
0.95116 1.69907 1.34951 1.35745 1.11068 0.86728 0.85016 0.78774
0.78688 1.19404 1.21059 1.19643 1.17797 0.77941 0.82549 0.86477
1.90735 1.52540 1.61600 1.37076 1.19911 0.97415 0.98300 0.98623
1.21776 0.93605 0.95408 0.92825 1.20740 0.90875 0.98932 0.97526
1.98362 1.31179 1.88699 1.85534 1.20898 0.93723 0.95114 0.99347
1.20828 0.97612 1.03184 0.96566 1.17696 0.82724 0.94218 0.93439
1.91528 1.44499 1.87724 1.86813 0.94758 0.94579 0.90164 0.93174
0.93061 0.89826 0.88710 0.94560 0.94534 0.92369 0.80985 0.84370
0.84013
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.45 11.01 101.05 1.11 1.56 16
2 O -0.37 -6.83 9.95 -35.40 -0.35 -7.19 16
3 C 0.04 0.73 6.28 37.16 0.23 0.96 16
4 C 0.12 2.22 5.83 -4.04 -0.02 2.20 16
5 N -0.59 -12.41 2.41 -176.23 -0.43 -12.84 16
6 C 0.24 5.45 4.75 -5.20 -0.02 5.43 16
7 C -0.54 -13.04 6.49 -34.44 -0.22 -13.26 16
8 H 0.06 1.54 7.21 -52.48 -0.38 1.16 16
9 C 0.08 1.89 5.46 -17.82 -0.10 1.80 16
10 N -0.88 -23.10 13.29 55.43 0.74 -22.36 16
11 Si 0.88 19.50 29.54 -169.99 -5.02 14.48 16
12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16
13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16
15 C 0.57 12.54 6.60 -12.40 -0.08 12.46 16
16 O -0.54 -13.03 16.02 5.14 0.08 -12.95 16
17 C -0.14 -2.83 4.42 -104.92 -0.46 -3.29 16
18 C -0.02 -0.34 7.66 -39.15 -0.30 -0.64 16
19 C -0.05 -0.94 6.31 -39.56 -0.25 -1.19 16
20 Cl -0.07 -1.13 28.95 -51.86 -1.50 -2.63 16
21 C -0.07 -1.06 9.82 -39.48 -0.39 -1.45 16
22 C -0.16 -2.45 10.01 -39.57 -0.40 -2.84 16
23 C 0.14 2.60 7.28 -38.96 -0.28 2.32 16
24 F -0.13 -2.49 16.72 2.25 0.04 -2.45 16
25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16
26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16
27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16
28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
29 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16
30 H 0.08 1.55 7.33 -51.93 -0.38 1.17 16
31 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16
32 H 0.04 0.91 6.77 -51.92 -0.35 0.56 16
33 H 0.04 0.88 8.05 -51.93 -0.42 0.46 16
34 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16
35 H 0.17 3.64 5.22 -52.49 -0.27 3.37 16
36 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16
37 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16
LS Contribution 337.91 15.07 5.09 5.09
Total: -1.00 -28.95 337.91 -6.85 -35.80
By element:
Atomic # 1 Polarization: 5.32 SS G_CDS: -4.32 Total: 1.00 kcal
Atomic # 6 Polarization: 5.23 SS G_CDS: -1.19 Total: 4.04 kcal
Atomic # 7 Polarization: -35.51 SS G_CDS: 0.31 Total: -35.20 kcal
Atomic # 8 Polarization: -19.86 SS G_CDS: -0.27 Total: -20.13 kcal
Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal
Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal
Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -28.95 -6.85 -35.80 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000103214096.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.540 kcal
(2) G-P(sol) polarization free energy of solvation -28.950 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.490 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.804 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.344 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds