Wall clock time and date at job start Tue Mar 31 2020 11:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99393 * 2 1 4 4 C 1.52998 * 109.46433 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47308 * 64.99940 * 4 3 2 6 6 C 1.46500 * 119.99629 * 84.41648 * 5 4 3 7 7 C 1.50693 * 109.47407 * 90.00342 * 6 5 4 8 8 H 1.08007 * 120.00152 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00041 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00217 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99897 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47228 * 89.99563 * 11 9 7 13 13 H 1.48505 * 109.46958 * 209.99521 * 11 9 7 14 14 H 1.48500 * 109.47244 * 329.99407 * 11 9 7 15 15 C 1.34770 * 119.99960 * 264.41165 * 5 4 3 16 16 O 1.21569 * 120.00402 * 5.18610 * 15 5 4 17 17 C 1.47692 * 120.00112 * 185.18373 * 15 5 4 18 18 C 1.39654 * 120.15879 * 56.16491 * 17 15 5 19 19 C 1.37975 * 119.86431 * 179.72028 * 18 17 15 20 20 Cl 1.73604 * 119.90564 * 180.27533 * 19 18 17 21 21 C 1.38558 * 120.18906 * 0.55908 * 19 18 17 22 22 C 1.38194 * 120.32624 * 359.71692 * 21 19 18 23 23 C 1.38314 * 120.13369 * 0.02562 * 22 21 19 24 24 F 1.35101 * 120.09950 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.47547 * 299.99701 * 1 2 3 26 26 H 1.08997 * 109.47612 * 60.00358 * 1 2 3 27 27 H 1.09006 * 109.46781 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47078 * 60.00396 * 3 2 1 29 29 H 1.08992 * 109.47054 * 299.99714 * 3 2 1 30 30 H 1.09003 * 109.47662 * 304.99485 * 4 3 2 31 31 H 1.09003 * 109.46860 * 184.99725 * 4 3 2 32 32 H 1.09010 * 109.46681 * 209.99944 * 6 5 4 33 33 H 1.08997 * 109.47316 * 329.99755 * 6 5 4 34 34 H 0.96997 * 120.00128 * 179.97438 * 10 9 7 35 35 H 1.07999 * 120.06873 * 0.02562 * 18 17 15 36 36 H 1.08001 * 119.83720 * 179.69462 * 21 19 18 37 37 H 1.08003 * 119.93398 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1704 1.3863 -2.4477 7 6 5.5913 1.8865 -2.4889 8 1 6.2811 1.6190 -1.7020 9 6 6.0107 2.6865 -3.5307 10 7 5.1708 3.0127 -4.4886 11 14 7.7719 3.3071 -3.5813 12 1 8.6190 2.3332 -4.3157 13 1 7.8142 4.6205 -4.2732 14 1 8.2825 3.4611 -2.1954 15 6 4.2043 -0.7634 -1.3010 16 8 3.9539 -1.4600 -0.3367 17 6 4.7580 -1.3718 -2.5276 18 6 5.9650 -0.9098 -3.0567 19 6 6.4797 -1.4865 -4.1997 20 17 7.9836 -0.9178 -4.8543 21 6 5.7967 -2.5142 -4.8297 22 6 4.5988 -2.9737 -4.3162 23 6 4.0732 -2.4089 -3.1682 24 9 2.9019 -2.8583 -2.6670 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.8508 0.5687 0.8427 31 1 3.9783 2.1767 0.0902 32 1 3.9702 0.7874 -3.3363 33 1 3.4871 2.2350 -2.4201 34 1 5.4657 3.5758 -5.2213 35 1 6.4970 -0.1060 -2.5695 36 1 6.2023 -2.9582 -5.7268 37 1 4.0715 -3.7749 -4.8127 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103214096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:30 Heat of formation + Delta-G solvation = -118.559229 kcal Electronic energy + Delta-G solvation = -24971.009622 eV Core-core repulsion = 21074.534017 eV Total energy + Delta-G solvation = -3896.475605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.01101 -41.19821 -39.52963 -38.59854 -37.31494 -36.75621 -34.59221 -32.83682 -31.29109 -30.85785 -28.96071 -27.24337 -25.37442 -25.00789 -23.88468 -23.16406 -20.59152 -18.81764 -18.68367 -18.09356 -17.86753 -17.42665 -17.29805 -16.78581 -16.62200 -16.43509 -16.08270 -15.88373 -15.19411 -15.13330 -14.48550 -14.44942 -14.28471 -14.16167 -13.56708 -13.47568 -13.37040 -13.11353 -13.00115 -12.69239 -12.60791 -12.54330 -12.23748 -12.06985 -11.96799 -11.86276 -11.65985 -10.91426 -10.56987 -10.55655 -10.10432 -9.60331 -9.49280 -8.17697 -6.29539 -0.24263 0.07426 1.09705 1.43322 1.47888 1.52346 1.69990 2.15816 2.41021 2.52454 2.94609 3.11233 3.15272 3.50527 3.73567 4.03560 4.13458 4.17308 4.22735 4.39121 4.50191 4.51027 4.53442 4.61471 4.77388 4.80013 4.85956 4.92200 4.95394 5.05205 5.15861 5.21280 5.62749 5.66332 5.80342 6.04899 6.31460 6.49712 6.78871 7.23019 7.41038 8.88118 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.006887 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.967754 B = 4064.393320 C = 5895.433724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.049 3.951 4 C 0.114 3.886 5 N -0.587 5.587 6 C 0.257 3.743 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.043 3.957 10 N -0.910 5.910 11 Si 0.928 3.072 12 H -0.263 1.263 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.560 3.440 16 O -0.569 6.569 17 C -0.165 4.165 18 C -0.033 4.033 19 C -0.061 4.061 20 Cl -0.062 7.062 21 C -0.054 4.054 22 C -0.141 4.141 23 C 0.120 3.880 24 F -0.138 7.138 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.015 0.985 33 H 0.024 0.976 34 H 0.267 0.733 35 H 0.152 0.848 36 H 0.182 0.818 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 -6.669 -0.090 6.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.028 4.028 4 C -0.008 4.008 5 N -0.317 5.317 6 C 0.136 3.864 7 C -0.575 4.575 8 H 0.078 0.922 9 C -0.159 4.159 10 N -0.548 5.548 11 Si 0.753 3.247 12 H -0.187 1.187 13 H -0.212 1.212 14 H -0.194 1.194 15 C 0.348 3.652 16 O -0.450 6.450 17 C -0.169 4.169 18 C -0.052 4.052 19 C -0.088 4.088 20 Cl -0.034 7.034 21 C -0.073 4.073 22 C -0.159 4.159 23 C 0.100 3.900 24 F -0.116 7.116 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.169 0.831 36 H 0.199 0.801 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.871 -7.008 0.214 7.256 hybrid contribution 0.441 1.067 -0.087 1.158 sum -1.431 -5.940 0.127 6.112 Atomic orbital electron populations 1.22853 0.80252 1.03105 1.00620 1.88062 1.20875 1.28309 1.95472 1.22999 0.93707 0.84877 1.01205 1.21599 0.93074 0.99646 0.86494 1.48050 1.64015 1.06547 1.13061 1.19064 0.96382 0.89488 0.81437 1.21477 0.96312 1.31414 1.08306 0.92210 1.25377 1.00207 0.95536 0.94829 1.69993 1.36387 1.36723 1.11734 0.85993 0.81749 0.78246 0.78706 1.18733 1.21171 1.19358 1.18150 0.77529 0.82615 0.86901 1.90694 1.54022 1.62055 1.38233 1.19907 0.98370 0.99810 0.98857 1.21526 0.93659 0.95931 0.94060 1.20914 0.91266 0.99569 0.97037 1.98361 1.30921 1.88838 1.85239 1.21372 0.92795 0.93323 0.99790 1.21283 0.97202 1.02866 0.94583 1.18037 0.82713 0.94486 0.94764 1.91497 1.45097 1.87792 1.87216 0.92274 0.94105 0.89595 0.89706 0.93663 0.90462 0.87448 0.96676 0.95758 0.92403 0.83110 0.80100 0.79770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 1.99 16 2 O -0.41 -15.02 9.95 -148.82 -1.48 -16.50 16 3 C 0.05 1.61 6.28 71.98 0.45 2.06 16 4 C 0.11 4.21 5.83 86.38 0.50 4.72 16 5 N -0.59 -25.54 2.41 -829.75 -2.00 -27.54 16 6 C 0.26 12.12 4.75 85.63 0.41 12.53 16 7 C -0.54 -26.07 6.49 25.60 0.17 -25.91 16 8 H 0.06 2.92 7.21 -2.91 -0.02 2.90 16 9 C 0.04 2.11 5.46 84.66 0.46 2.57 16 10 N -0.91 -47.99 13.29 21.45 0.28 -47.71 16 11 Si 0.93 39.65 29.54 68.60 2.03 41.67 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 15 C 0.56 25.58 6.60 86.74 0.57 26.15 16 16 O -0.57 -28.27 16.02 -3.77 -0.06 -28.33 16 17 C -0.17 -6.86 4.42 -20.06 -0.09 -6.95 16 18 C -0.03 -1.30 7.66 22.55 0.17 -1.13 16 19 C -0.06 -2.04 6.31 22.28 0.14 -1.90 16 20 Cl -0.06 -2.01 28.95 -2.72 -0.08 -2.09 16 21 C -0.05 -1.42 9.82 22.34 0.22 -1.20 16 22 C -0.14 -3.79 10.01 22.28 0.22 -3.57 16 23 C 0.12 4.39 7.28 22.67 0.17 4.56 16 24 F -0.14 -5.36 16.72 44.97 0.75 -4.61 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.51 8.12 -2.39 -0.02 1.49 16 30 H 0.08 2.93 7.33 -2.39 -0.02 2.91 16 31 H 0.11 3.59 8.11 -2.39 -0.02 3.57 16 32 H 0.02 0.78 6.77 -2.38 -0.02 0.77 16 33 H 0.02 1.20 8.05 -2.39 -0.02 1.18 16 34 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 35 H 0.15 6.55 5.22 -2.91 -0.02 6.54 16 36 H 0.18 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.19 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -63.49 337.91 5.18 -58.31 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.10 Total: 12.86 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 4.64 Total: 13.93 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -1.72 Total: -75.25 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -1.54 Total: -44.84 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.75 Total: -4.61 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.67 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.08 Total: -2.09 kcal Total: -63.49 5.18 -58.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.252 kcal (2) G-P(sol) polarization free energy of solvation -63.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds