Wall clock time and date at job start Tue Mar 31 2020 10:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50695 * 120.00188 * 2 1 4 4 N 1.46506 * 109.46747 * 124.99994 * 3 2 1 5 5 C 1.46498 * 120.00239 * 274.72228 * 4 3 2 6 6 C 1.50703 * 109.46964 * 84.99935 * 5 4 3 7 7 C 1.33394 * 125.19646 * 90.00026 * 6 5 4 8 8 C 1.38425 * 114.91472 * 179.97438 * 7 6 5 9 9 C 1.33390 * 114.92436 * 0.02562 * 8 7 6 10 10 S 1.75874 * 125.20590 * 269.69779 * 6 5 4 11 11 S 1.65597 * 119.99791 * 95.00454 * 4 3 2 12 12 O 1.42103 * 104.27453 * 206.07116 * 11 4 3 13 13 O 1.42101 * 104.27834 * 333.92149 * 11 4 3 14 14 C 1.81392 * 104.45287 * 89.99800 * 11 4 3 15 15 C 1.53002 * 109.47473 * 180.02562 * 14 11 4 16 16 C 1.50700 * 109.47327 * 180.02562 * 15 14 11 17 17 H 1.07998 * 119.99754 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99802 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00218 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99936 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46858 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47305 * 119.99962 * 20 18 16 23 23 H 1.48501 * 109.46871 * 240.00183 * 20 18 16 24 24 H 1.07993 * 120.00015 * 179.97438 * 1 2 3 25 25 H 1.07998 * 119.99580 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99580 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47015 * 5.00201 * 3 2 1 28 28 H 1.08998 * 109.47238 * 245.00225 * 3 2 1 29 29 H 1.08990 * 109.47572 * 205.00129 * 5 4 3 30 30 H 1.09003 * 109.47280 * 325.00485 * 5 4 3 31 31 H 1.07992 * 122.54178 * 359.96182 * 7 6 5 32 32 H 1.08001 * 122.53718 * 180.02562 * 8 7 6 33 33 H 1.08003 * 125.20440 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.47063 * 299.99983 * 14 11 4 35 35 H 1.08995 * 109.47533 * 59.99686 * 14 11 4 36 36 H 1.09005 * 109.46725 * 299.99899 * 15 14 11 37 37 H 1.08995 * 109.47234 * 59.99213 * 15 14 11 38 38 H 0.97005 * 119.99687 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3317 1.1315 5 6 2.5301 1.7677 2.4510 6 6 1.9088 0.6015 3.1756 7 6 2.5631 -0.2468 3.9704 8 6 1.7814 -1.2431 4.5294 9 6 0.4924 -1.2041 4.1882 10 16 0.2089 0.1553 3.1088 11 16 4.5714 0.8757 0.9173 12 8 4.9848 0.4303 2.2018 13 8 4.5315 -0.0151 -0.1891 14 6 5.4292 2.4098 0.4689 15 6 6.9135 2.1164 0.2414 16 6 7.6263 3.3911 -0.1305 17 1 7.0756 4.3176 -0.1983 18 6 8.9813 3.3743 -0.3842 19 7 9.6520 2.2460 -0.3012 20 14 9.8647 4.9542 -0.8460 21 1 8.8920 6.0759 -0.8712 22 1 10.9243 5.2395 0.1546 23 1 10.4800 4.8028 -2.1890 24 1 -0.5400 -0.9352 -0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4025 -0.9314 29 1 3.3752 2.1448 3.0268 30 1 1.7892 2.5584 2.3328 31 1 3.6224 -0.1629 4.1629 32 1 2.1845 -1.9949 5.1917 33 1 -0.2626 -1.8980 4.5272 34 1 4.9950 2.8150 -0.4452 35 1 5.3213 3.1354 1.2750 36 1 7.3479 1.7110 1.1553 37 1 7.0211 1.3909 -0.5648 38 1 10.6053 2.2342 -0.4800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104109332.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:05 Heat of formation + Delta-G solvation = -17.697196 kcal Electronic energy + Delta-G solvation = -22159.378162 eV Core-core repulsion = 18835.533146 eV Total energy + Delta-G solvation = -3323.845016 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.19762 -36.86648 -36.49957 -35.40264 -33.91107 -33.28475 -31.18365 -30.31075 -26.73622 -25.65432 -24.85644 -22.81766 -21.56668 -20.12966 -19.20142 -18.54878 -17.63348 -17.03775 -16.56126 -16.31093 -15.56816 -15.21614 -15.00598 -14.57068 -14.26364 -14.02831 -13.39906 -13.24056 -13.06830 -12.73025 -12.54389 -12.50519 -12.31378 -11.79703 -11.77593 -11.57209 -11.37887 -11.32154 -11.13262 -11.10984 -10.97345 -10.71728 -10.41555 -10.40302 -9.80836 -9.57086 -9.40263 -8.96643 -8.64419 -8.52591 -8.22845 -6.14375 -4.20122 0.63534 1.04383 1.66245 2.02149 2.28483 2.78003 3.16075 3.24073 3.31449 3.34719 4.28379 4.37684 4.56155 4.61014 4.80740 4.96131 5.05412 5.16591 5.20909 5.27117 5.40826 5.53989 5.58383 5.62914 5.64923 5.72323 5.92861 5.95348 6.23562 6.37406 6.45640 6.46560 6.58257 6.62971 6.81657 7.27549 7.33254 7.78728 8.15248 8.83575 9.44944 10.96631 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.025396 B = 0.003534 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.275674 B = 7920.536260 C = 8332.710214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.162 4.162 3 C 0.150 3.850 4 N -0.997 5.997 5 C 0.198 3.802 6 C -0.194 4.194 7 C -0.118 4.118 8 C -0.135 4.135 9 C -0.221 4.221 10 S 0.098 5.902 11 S 2.585 3.415 12 O -0.958 6.958 13 O -0.960 6.960 14 C -0.590 4.590 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.155 0.845 32 H 0.137 0.863 33 H 0.159 0.841 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.785 -2.413 6.180 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.182 4.182 3 C 0.025 3.975 4 N -0.831 5.831 5 C 0.070 3.930 6 C -0.313 4.313 7 C -0.150 4.150 8 C -0.166 4.166 9 C -0.357 4.357 10 S 0.362 5.638 11 S 2.684 3.316 12 O -0.949 6.949 13 O -0.950 6.950 14 C -0.723 4.723 15 C -0.011 4.011 16 C -0.560 4.560 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.130 0.870 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.172 0.828 32 H 0.155 0.845 33 H 0.176 0.824 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.592 -2.786 5.537 22.464 hybrid contribution 1.682 0.647 0.376 1.841 sum -19.909 -2.139 5.913 20.879 Atomic orbital electron populations 1.23683 0.95580 1.01592 1.00859 1.23347 0.96207 0.99382 0.99278 1.20377 0.92801 0.95641 0.88714 1.57975 1.27227 1.83811 1.14058 1.19600 0.99804 0.91734 0.81833 1.24864 0.96237 1.04660 1.05524 1.20485 1.02279 0.94467 0.97731 1.20233 0.93043 1.00631 1.02734 1.25629 1.00585 1.04079 1.05403 1.84085 1.08231 1.25392 1.46106 1.05961 0.72820 0.78231 0.74576 1.93518 1.80859 1.79939 1.40536 1.93545 1.85037 1.61536 1.54875 1.30509 1.12426 1.18701 1.10711 1.18966 0.84187 0.99351 0.98591 1.21037 0.93203 0.93726 1.47991 0.91978 1.25072 0.97589 0.96633 0.95194 1.69967 1.08647 1.25654 1.48539 0.86418 0.79642 0.83029 0.78230 1.19625 1.20766 1.20778 0.88559 0.88743 0.87008 0.90197 0.88937 0.87956 0.89565 0.82792 0.84531 0.82383 0.86287 0.86242 0.94841 0.94904 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 12.43 29.01 0.36 -1.35 16 2 C -0.16 -1.94 8.71 -36.03 -0.31 -2.25 16 3 C 0.15 1.72 5.72 -5.19 -0.03 1.69 16 4 N -1.00 -13.22 2.72 -116.95 -0.32 -13.53 16 5 C 0.20 2.28 5.78 -5.19 -0.03 2.25 16 6 C -0.19 -2.42 5.61 -36.00 -0.20 -2.62 16 7 C -0.12 -1.60 9.61 -41.21 -0.40 -1.99 16 8 C -0.14 -1.59 10.18 -41.21 -0.42 -2.00 16 9 C -0.22 -2.32 11.23 29.04 0.33 -1.99 16 10 S 0.10 1.03 20.74 -107.50 -2.23 -1.20 16 11 S 2.59 45.63 5.31 -107.50 -0.57 45.06 16 12 O -0.96 -18.77 15.57 -57.54 -0.90 -19.67 16 13 O -0.96 -19.66 16.99 -57.54 -0.98 -20.64 16 14 C -0.59 -11.04 6.12 37.16 0.23 -10.81 16 15 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 16 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 20 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 25 H 0.09 0.76 7.84 -52.49 -0.41 0.35 16 26 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.08 0.69 7.65 -51.93 -0.40 0.29 16 28 H 0.09 1.07 7.61 -51.93 -0.40 0.67 16 29 H 0.10 1.13 7.60 -51.93 -0.39 0.74 16 30 H 0.09 0.75 8.00 -51.93 -0.42 0.33 16 31 H 0.15 2.26 7.09 -52.49 -0.37 1.89 16 32 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.12 2.00 8.14 -51.92 -0.42 1.57 16 35 H 0.12 1.98 8.14 -51.93 -0.42 1.55 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -33.62 347.03 -10.38 -44.00 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.31 Total: 1.88 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: -1.03 Total: -31.54 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.42 Total: -39.11 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.87 Total: -40.31 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 46.66 SS G_CDS: -2.80 Total: 43.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.62 -10.38 -44.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104109332.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.305 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds