Wall clock time and date at job start Tue Mar 31 2020 10:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36886 * 119.99945 * 2 1 4 4 H 1.07995 * 120.00223 * 174.64924 * 3 2 1 5 5 C 1.39043 * 119.99847 * 354.64808 * 3 2 1 6 6 N 1.31376 * 119.99929 * 5.04697 * 5 3 2 7 7 Si 1.86800 * 119.99991 * 185.04871 * 5 3 2 8 8 H 1.48493 * 109.46911 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46724 * 120.00119 * 7 5 3 10 10 H 1.48491 * 109.47051 * 239.99650 * 7 5 3 11 11 C 1.34778 * 120.00306 * 179.97438 * 2 1 3 12 12 O 1.21598 * 120.00125 * 185.89952 * 11 2 1 13 13 C 1.47667 * 119.99989 * 5.63104 * 11 2 1 14 14 C 1.39498 * 120.10553 * 54.54416 * 13 11 2 15 15 C 1.39006 * 119.73553 * 179.81765 * 14 13 11 16 16 C 1.48405 * 120.02690 * 180.18778 * 15 14 13 17 17 C 1.39326 * 120.12279 * 359.97438 * 16 15 14 18 18 C 1.38022 * 119.87851 * 179.74507 * 17 16 15 19 19 C 1.38322 * 120.12059 * 0.52694 * 18 17 16 20 20 C 1.38316 * 120.24052 * 359.72711 * 19 18 17 21 21 C 1.38016 * 120.12292 * 0.02562 * 20 19 18 22 22 C 1.39509 * 119.94541 * 0.44227 * 15 14 13 23 23 C 1.38068 * 120.20524 * 359.78620 * 22 15 14 24 24 C 1.38216 * 120.26516 * 0.02562 * 23 22 15 25 25 Cl 1.73597 * 119.97079 * 179.97438 * 24 23 22 26 26 H 1.09005 * 109.46725 * 185.12128 * 1 2 3 27 27 H 1.08998 * 109.47465 * 305.11967 * 1 2 3 28 28 H 1.09003 * 109.47174 * 65.12517 * 1 2 3 29 29 H 0.96999 * 120.00031 * 180.02562 * 6 5 3 30 30 H 1.07998 * 120.13233 * 0.02562 * 14 13 11 31 31 H 1.08003 * 120.05950 * 359.97438 * 17 16 15 32 32 H 1.08006 * 119.93818 * 180.25519 * 18 17 16 33 33 H 1.08004 * 119.87535 * 179.74200 * 19 18 17 34 34 H 1.08001 * 119.93772 * 180.02562 * 20 19 18 35 35 H 1.08003 * 120.06259 * 180.02562 * 21 20 19 36 36 H 1.08000 * 119.90080 * 179.76785 * 22 15 14 37 37 H 1.07999 * 119.86683 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1855 0.0000 4 1 3.2259 1.1876 0.0872 5 6 1.4587 2.3870 -0.1123 6 7 0.1450 2.3913 -0.1186 7 14 2.3987 3.9950 -0.2544 8 1 3.8576 3.7198 -0.2235 9 1 2.0482 4.6618 -1.5341 10 1 2.0375 4.8814 0.8808 11 6 2.1390 -1.1672 0.0005 12 8 3.3501 -1.1699 0.1088 13 6 1.4060 -2.4430 -0.1244 14 6 0.5375 -2.6490 -1.1964 15 6 -0.1457 -3.8544 -1.3085 16 6 -1.0681 -4.0819 -2.4486 17 6 -1.2520 -3.0888 -3.4082 18 6 -2.1071 -3.3078 -4.4693 19 6 -2.7892 -4.5065 -4.5751 20 6 -2.6144 -5.4939 -3.6224 21 6 -1.7579 -5.2874 -2.5600 22 6 0.0325 -4.8480 -0.3455 23 6 0.8891 -4.6398 0.7171 24 6 1.5757 -3.4460 0.8349 25 17 2.6503 -3.1922 2.1744 26 1 -0.3633 -1.0236 0.0917 27 1 -0.3634 0.5912 0.8405 28 1 -0.3634 0.4323 -0.9323 29 1 -0.3369 3.2295 -0.1973 30 1 0.3989 -1.8763 -1.9381 31 1 -0.7235 -2.1506 -3.3240 32 1 -2.2472 -2.5401 -5.2160 33 1 -3.4605 -4.6721 -5.4048 34 1 -3.1491 -6.4281 -3.7100 35 1 -1.6219 -6.0593 -1.8168 36 1 -0.5015 -5.7828 -0.4313 37 1 1.0226 -5.4126 1.4596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110675428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:29 Heat of formation + Delta-G solvation = 28.525425 kcal Electronic energy + Delta-G solvation = -23012.912183 eV Core-core repulsion = 19553.583872 eV Total energy + Delta-G solvation = -3459.328311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.01528 -38.83028 -37.46678 -36.01001 -34.72984 -32.51445 -31.99337 -31.24356 -30.44614 -28.62874 -26.41949 -24.92403 -23.51384 -23.44790 -21.80920 -21.11123 -19.27454 -17.57253 -16.95657 -16.33643 -16.20350 -15.67692 -15.30725 -14.53564 -14.40591 -14.18610 -13.96352 -13.71868 -13.47459 -13.35377 -13.31531 -12.76545 -12.57296 -11.97221 -11.87933 -11.68124 -11.45090 -11.22299 -11.10414 -11.03037 -10.85846 -10.81260 -10.40084 -10.36081 -10.27740 -9.40092 -9.10335 -9.01037 -8.74556 -8.40974 -7.92934 -7.86617 -6.32375 -3.85517 0.64429 1.33927 1.35740 1.84054 2.54092 3.10415 3.21611 3.29200 3.48153 3.87055 4.03306 4.14715 4.55841 4.63927 4.79835 4.88552 4.96519 5.05899 5.15906 5.18166 5.33279 5.37385 5.52697 5.65122 5.76176 5.88596 5.90861 6.08951 6.20757 6.24876 6.35704 6.42563 6.43468 6.52452 6.72760 6.86831 6.93712 7.04581 7.35723 7.49805 7.99116 8.41838 9.11468 9.35251 9.90764 10.60888 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.004779 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.060636 B = 5856.970973 C = 7867.061691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.431 5.431 3 C -0.295 4.295 4 H 0.108 0.892 5 C 0.027 3.973 6 N -0.882 5.882 7 Si 0.933 3.067 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.280 1.280 11 C 0.466 3.534 12 O -0.576 6.576 13 C -0.072 4.072 14 C -0.072 4.072 15 C -0.054 4.054 16 C -0.036 4.036 17 C -0.108 4.108 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.101 4.101 23 C -0.116 4.116 24 C -0.005 4.005 25 Cl -0.053 7.053 26 H 0.025 0.975 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.267 0.733 30 H 0.137 0.863 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 -13.727 -4.627 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.147 5.147 3 C -0.423 4.423 4 H 0.126 0.874 5 C -0.175 4.175 6 N -0.522 5.522 7 Si 0.759 3.241 8 H -0.191 1.191 9 H -0.205 1.205 10 H -0.206 1.206 11 C 0.254 3.746 12 O -0.462 6.462 13 C -0.076 4.076 14 C -0.091 4.091 15 C -0.054 4.054 16 C -0.036 4.036 17 C -0.126 4.126 18 C -0.134 4.134 19 C -0.142 4.142 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.119 4.119 23 C -0.134 4.134 24 C -0.033 4.033 25 Cl -0.024 7.024 26 H 0.043 0.957 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.578 -13.485 -4.455 16.097 hybrid contribution 0.191 0.879 0.046 0.901 sum -7.387 -12.606 -4.409 15.262 Atomic orbital electron populations 1.21923 0.80078 0.96805 1.04495 1.43652 1.06181 1.04602 1.60312 1.19923 0.93648 0.81921 1.46789 0.87410 1.25379 0.95804 0.99836 0.96522 1.70175 1.05910 1.27284 1.48874 0.85744 0.79816 0.80663 0.77872 1.19077 1.20548 1.20612 1.17545 0.87335 0.82606 0.87120 1.90646 1.13115 1.86185 1.56219 1.20148 0.96900 0.96143 0.94424 1.21401 0.94024 0.96531 0.97109 1.18695 0.97571 0.94310 0.94867 1.18764 0.96303 0.94391 0.94145 1.21376 0.98286 0.99038 0.93892 1.21120 0.96755 0.97440 0.98065 1.21192 0.99892 0.93967 0.99155 1.21048 0.98821 0.99218 0.94779 1.21210 0.96798 0.96664 0.98421 1.21095 0.98390 0.98821 0.93601 1.20847 0.97436 0.95877 0.99270 1.21050 0.95750 0.95176 0.91286 1.98376 1.63303 1.96773 1.43941 0.95657 0.90413 0.91666 0.92233 0.84552 0.85306 0.85810 0.86213 0.86060 0.85736 0.85089 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.54 8.05 59.85 0.48 3.02 16 2 N -0.43 -11.14 3.02 -123.33 -0.37 -11.51 16 3 C -0.30 -8.15 9.56 -15.00 -0.14 -8.30 16 4 H 0.11 3.13 7.17 -52.49 -0.38 2.75 16 5 C 0.03 0.70 5.46 -17.45 -0.10 0.60 16 6 N -0.88 -22.66 9.44 55.50 0.52 -22.14 16 7 Si 0.93 20.49 29.56 -169.99 -5.02 15.47 16 8 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 C 0.47 11.70 6.49 -12.41 -0.08 11.62 16 12 O -0.58 -16.26 15.76 5.28 0.08 -16.18 16 13 C -0.07 -1.47 4.56 -104.98 -0.48 -1.95 16 14 C -0.07 -1.26 7.12 -38.83 -0.28 -1.54 16 15 C -0.05 -0.80 5.87 -104.95 -0.62 -1.41 16 16 C -0.04 -0.47 5.88 -104.90 -0.62 -1.09 16 17 C -0.11 -1.39 9.42 -39.26 -0.37 -1.76 16 18 C -0.12 -1.27 10.03 -39.63 -0.40 -1.67 16 19 C -0.12 -1.21 10.04 -39.52 -0.40 -1.61 16 20 C -0.12 -1.17 10.03 -39.63 -0.40 -1.56 16 21 C -0.11 -1.23 9.43 -39.25 -0.37 -1.60 16 22 C -0.10 -1.31 9.42 -39.17 -0.37 -1.68 16 23 C -0.12 -1.66 9.80 -39.65 -0.39 -2.04 16 24 C 0.00 -0.09 6.35 -39.00 -0.25 -0.33 16 25 Cl -0.05 -1.01 27.36 -51.86 -1.42 -2.43 16 26 H 0.02 0.51 5.22 -51.93 -0.27 0.24 16 27 H 0.08 1.91 6.89 -51.93 -0.36 1.56 16 28 H 0.06 1.52 7.20 -51.93 -0.37 1.15 16 29 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 30 H 0.14 2.37 5.91 -52.49 -0.31 2.06 16 31 H 0.13 1.68 6.20 -52.48 -0.33 1.35 16 32 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.12 1.10 6.20 -52.48 -0.33 0.77 16 36 H 0.13 1.26 6.19 -52.49 -0.32 0.94 16 37 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -30.77 325.49 -9.56 -40.32 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.49 Total: 2.87 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -4.76 Total: -11.31 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.15 Total: -33.65 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.08 Total: -16.18 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.42 Total: -2.43 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.77 -9.56 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110675428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.849 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds