Wall clock time and date at job start Tue Mar 31 2020 10:58:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.36886 * 119.99945 * 2 1
4 4 H 1.07995 * 120.00223 * 174.64924 * 3 2 1
5 5 C 1.39043 * 119.99847 * 354.64808 * 3 2 1
6 6 N 1.31376 * 119.99929 * 5.04697 * 5 3 2
7 7 Si 1.86800 * 119.99991 * 185.04871 * 5 3 2
8 8 H 1.48493 * 109.46911 * 0.02562 * 7 5 3
9 9 H 1.48502 * 109.46724 * 120.00119 * 7 5 3
10 10 H 1.48491 * 109.47051 * 239.99650 * 7 5 3
11 11 C 1.34778 * 120.00306 * 179.97438 * 2 1 3
12 12 O 1.21598 * 120.00125 * 185.89952 * 11 2 1
13 13 C 1.47667 * 119.99989 * 5.63104 * 11 2 1
14 14 C 1.39498 * 120.10553 * 54.54416 * 13 11 2
15 15 C 1.39006 * 119.73553 * 179.81765 * 14 13 11
16 16 C 1.48405 * 120.02690 * 180.18778 * 15 14 13
17 17 C 1.39326 * 120.12279 * 359.97438 * 16 15 14
18 18 C 1.38022 * 119.87851 * 179.74507 * 17 16 15
19 19 C 1.38322 * 120.12059 * 0.52694 * 18 17 16
20 20 C 1.38316 * 120.24052 * 359.72711 * 19 18 17
21 21 C 1.38016 * 120.12292 * 0.02562 * 20 19 18
22 22 C 1.39509 * 119.94541 * 0.44227 * 15 14 13
23 23 C 1.38068 * 120.20524 * 359.78620 * 22 15 14
24 24 C 1.38216 * 120.26516 * 0.02562 * 23 22 15
25 25 Cl 1.73597 * 119.97079 * 179.97438 * 24 23 22
26 26 H 1.09005 * 109.46725 * 185.12128 * 1 2 3
27 27 H 1.08998 * 109.47465 * 305.11967 * 1 2 3
28 28 H 1.09003 * 109.47174 * 65.12517 * 1 2 3
29 29 H 0.96999 * 120.00031 * 180.02562 * 6 5 3
30 30 H 1.07998 * 120.13233 * 0.02562 * 14 13 11
31 31 H 1.08003 * 120.05950 * 359.97438 * 17 16 15
32 32 H 1.08006 * 119.93818 * 180.25519 * 18 17 16
33 33 H 1.08004 * 119.87535 * 179.74200 * 19 18 17
34 34 H 1.08001 * 119.93772 * 180.02562 * 20 19 18
35 35 H 1.08003 * 120.06259 * 180.02562 * 21 20 19
36 36 H 1.08000 * 119.90080 * 179.76785 * 22 15 14
37 37 H 1.07999 * 119.86683 * 179.97438 * 23 22 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1494 1.1855 0.0000
4 1 3.2259 1.1876 0.0872
5 6 1.4587 2.3870 -0.1123
6 7 0.1450 2.3913 -0.1186
7 14 2.3987 3.9950 -0.2544
8 1 3.8576 3.7198 -0.2235
9 1 2.0482 4.6618 -1.5341
10 1 2.0375 4.8814 0.8808
11 6 2.1390 -1.1672 0.0005
12 8 3.3501 -1.1699 0.1088
13 6 1.4060 -2.4430 -0.1244
14 6 0.5375 -2.6490 -1.1964
15 6 -0.1457 -3.8544 -1.3085
16 6 -1.0681 -4.0819 -2.4486
17 6 -1.2520 -3.0888 -3.4082
18 6 -2.1071 -3.3078 -4.4693
19 6 -2.7892 -4.5065 -4.5751
20 6 -2.6144 -5.4939 -3.6224
21 6 -1.7579 -5.2874 -2.5600
22 6 0.0325 -4.8480 -0.3455
23 6 0.8891 -4.6398 0.7171
24 6 1.5757 -3.4460 0.8349
25 17 2.6503 -3.1922 2.1744
26 1 -0.3633 -1.0236 0.0917
27 1 -0.3634 0.5912 0.8405
28 1 -0.3634 0.4323 -0.9323
29 1 -0.3369 3.2295 -0.1973
30 1 0.3989 -1.8763 -1.9381
31 1 -0.7235 -2.1506 -3.3240
32 1 -2.2472 -2.5401 -5.2160
33 1 -3.4605 -4.6721 -5.4048
34 1 -3.1491 -6.4281 -3.7100
35 1 -1.6219 -6.0593 -1.8168
36 1 -0.5015 -5.7828 -0.4313
37 1 1.0226 -5.4126 1.4596
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000110675428.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:58:29
Heat of formation + Delta-G solvation = 12.682047 kcal
Electronic energy + Delta-G solvation = -23013.599203 eV
Core-core repulsion = 19553.583872 eV
Total energy + Delta-G solvation = -3460.015331 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 315.077 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-41.33210 -40.14762 -38.89460 -37.39766 -36.74231 -33.87125 -33.52676 -32.50458
-31.56531 -29.69243 -28.36569 -26.73098 -24.82969 -24.56566 -22.95220 -22.21437
-20.78266 -19.13494 -18.64798 -17.88468 -17.30751 -16.94907 -16.81847 -16.09982
-15.86750 -15.65827 -15.09145 -14.97253 -14.77337 -14.69436 -14.51038 -14.08325
-13.76513 -13.71087 -13.55906 -13.04235 -12.84515 -12.81185 -12.70598 -12.49365
-12.24897 -12.14315 -12.03920 -11.94836 -11.65766 -11.08995 -10.53807 -10.45395
-9.99585 -9.93438 -9.82307 -8.96945 -8.31389 -5.95847 -0.45443 0.04443
0.53411 0.80127 1.16162 1.33689 1.38647 1.53182 1.94215 2.21361
2.50748 2.95537 3.05785 3.10241 3.55753 3.64947 3.77816 4.06395
4.08884 4.15912 4.23206 4.34590 4.44855 4.53577 4.63832 4.69608
4.79919 4.91658 5.09024 5.12284 5.15247 5.19227 5.23656 5.38248
5.41126 5.56241 5.64572 5.69554 5.75588 5.96260 6.11642 6.40439
7.08560 7.37042 7.92956 8.60465
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.011752 B = 0.004779 C = 0.003558
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2382.060636 B = 5856.970973 C = 7867.061691
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.130 3.870
2 N -0.446 5.446
3 C -0.340 4.340
4 H 0.079 0.921
5 C -0.002 4.002
6 N -0.892 5.892
7 Si 0.996 3.004
8 H -0.276 1.276
9 H -0.266 1.266
10 H -0.268 1.268
11 C 0.464 3.536
12 O -0.620 6.620
13 C -0.105 4.105
14 C -0.083 4.083
15 C -0.043 4.043
16 C -0.062 4.062
17 C -0.130 4.130
18 C -0.128 4.128
19 C -0.119 4.119
20 C -0.120 4.120
21 C -0.109 4.109
22 C -0.080 4.080
23 C -0.101 4.101
24 C -0.024 4.024
25 Cl -0.071 7.071
26 H 0.049 0.951
27 H 0.058 0.942
28 H 0.055 0.945
29 H 0.274 0.726
30 H 0.124 0.876
31 H 0.110 0.890
32 H 0.135 0.865
33 H 0.148 0.852
34 H 0.155 0.845
35 H 0.153 0.847
36 H 0.181 0.819
37 H 0.171 0.829
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.775 -16.541 -5.566 20.511
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.012 4.012
2 N -0.163 5.163
3 C -0.468 4.468
4 H 0.097 0.903
5 C -0.203 4.203
6 N -0.532 5.532
7 Si 0.819 3.181
8 H -0.200 1.200
9 H -0.191 1.191
10 H -0.193 1.193
11 C 0.253 3.747
12 O -0.508 6.508
13 C -0.109 4.109
14 C -0.102 4.102
15 C -0.044 4.044
16 C -0.062 4.062
17 C -0.148 4.148
18 C -0.146 4.146
19 C -0.137 4.137
20 C -0.137 4.137
21 C -0.126 4.126
22 C -0.097 4.097
23 C -0.119 4.119
24 C -0.052 4.052
25 Cl -0.042 7.042
26 H 0.068 0.932
27 H 0.077 0.923
28 H 0.074 0.926
29 H 0.085 0.915
30 H 0.142 0.858
31 H 0.128 0.872
32 H 0.153 0.847
33 H 0.166 0.834
34 H 0.173 0.827
35 H 0.170 0.830
36 H 0.198 0.802
37 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges -10.284 -16.306 -5.398 20.020
hybrid contribution 0.879 1.598 0.208 1.836
sum -9.405 -14.709 -5.190 18.214
Atomic orbital electron populations
1.21696 0.78746 0.97832 1.02973 1.43834 1.07065 1.04612 1.60793
1.19831 0.92909 0.83723 1.50305 0.90260 1.26122 0.96784 1.02181
0.95216 1.70253 1.06578 1.28433 1.47906 0.84838 0.77941 0.76734
0.78609 1.20041 1.19094 1.19330 1.18309 0.87184 0.83982 0.85201
1.90581 1.15238 1.87310 1.57683 1.19814 0.99251 0.94655 0.97159
1.21314 0.94568 0.98051 0.96309 1.18938 0.96534 0.93196 0.95693
1.18782 0.97534 0.95877 0.93991 1.21429 0.99323 0.98830 0.95232
1.21342 0.96662 0.98738 0.97810 1.21603 0.99138 0.93101 0.99809
1.21483 0.98132 1.00314 0.93801 1.21533 0.95885 0.95934 0.99296
1.21642 0.96829 0.99727 0.91528 1.21262 0.95845 0.94694 1.00128
1.21290 0.96768 0.96316 0.90846 1.98362 1.64169 1.96988 1.44665
0.93221 0.92306 0.92616 0.91520 0.85789 0.87151 0.84701 0.83449
0.82715 0.82972 0.80173 0.81139
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.13 6.30 8.05 127.77 1.03 7.33 16
2 N -0.45 -24.57 3.02 -662.38 -2.00 -26.57 16
3 C -0.34 -19.99 9.56 84.10 0.80 -19.19 16
4 H 0.08 4.99 7.17 -2.91 -0.02 4.97 16
5 C 0.00 -0.09 5.46 84.95 0.46 0.38 16
6 N -0.89 -46.95 9.44 21.68 0.20 -46.74 16
7 Si 1.00 43.04 29.56 68.60 2.03 45.07 16
8 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16
9 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16
10 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16
11 C 0.46 24.80 6.49 86.73 0.56 25.36 16
12 O -0.62 -37.49 15.76 -4.02 -0.06 -37.55 16
13 C -0.10 -4.44 4.56 -20.10 -0.09 -4.54 16
14 C -0.08 -3.00 7.12 22.76 0.16 -2.84 16
15 C -0.04 -1.20 5.87 -20.08 -0.12 -1.32 16
16 C -0.06 -1.48 5.88 -20.04 -0.12 -1.60 16
17 C -0.13 -3.29 9.42 22.48 0.21 -3.08 16
18 C -0.13 -2.58 10.03 22.24 0.22 -2.36 16
19 C -0.12 -1.87 10.04 22.31 0.22 -1.64 16
20 C -0.12 -1.72 10.03 22.24 0.22 -1.50 16
21 C -0.11 -1.87 9.43 22.48 0.21 -1.66 16
22 C -0.08 -1.74 9.42 22.54 0.21 -1.53 16
23 C -0.10 -2.59 9.80 22.22 0.22 -2.37 16
24 C -0.02 -0.90 6.35 22.65 0.14 -0.75 16
25 Cl -0.07 -2.75 27.36 -2.72 -0.07 -2.82 16
26 H 0.05 2.11 5.22 -2.38 -0.01 2.10 16
27 H 0.06 3.02 6.89 -2.39 -0.02 3.00 16
28 H 0.06 2.74 7.20 -2.39 -0.02 2.72 16
29 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16
30 H 0.12 4.65 5.91 -2.91 -0.02 4.63 16
31 H 0.11 3.09 6.20 -2.91 -0.02 3.07 16
32 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16
33 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16
34 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16
35 H 0.15 1.68 6.20 -2.91 -0.02 1.66 16
36 H 0.18 2.22 6.19 -2.91 -0.02 2.20 16
37 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16
Total: -1.00 -72.53 325.49 5.57 -66.96
By element:
Atomic # 1 Polarization: 11.86 SS G_CDS: 1.12 Total: 12.98 kcal
Atomic # 6 Polarization: -15.68 SS G_CDS: 4.36 Total: -11.32 kcal
Atomic # 7 Polarization: -71.51 SS G_CDS: -1.80 Total: -73.31 kcal
Atomic # 8 Polarization: -37.49 SS G_CDS: -0.06 Total: -37.55 kcal
Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal
Atomic # 17 Polarization: -2.75 SS G_CDS: -0.07 Total: -2.82 kcal
Total: -72.53 5.57 -66.96 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000110675428.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.638 kcal
(2) G-P(sol) polarization free energy of solvation -72.530 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.108 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.956 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.682 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds