Wall clock time and date at job start Tue Mar 31 2020 10:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36886 * 119.99945 * 2 1 4 4 H 1.07995 * 120.00223 * 174.64924 * 3 2 1 5 5 C 1.39043 * 119.99847 * 354.64808 * 3 2 1 6 6 N 1.31376 * 119.99929 * 5.04697 * 5 3 2 7 7 Si 1.86800 * 119.99991 * 185.04871 * 5 3 2 8 8 H 1.48493 * 109.46911 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46724 * 120.00119 * 7 5 3 10 10 H 1.48491 * 109.47051 * 239.99650 * 7 5 3 11 11 C 1.34778 * 120.00306 * 179.97438 * 2 1 3 12 12 O 1.21598 * 120.00125 * 185.89952 * 11 2 1 13 13 C 1.47667 * 119.99989 * 5.63104 * 11 2 1 14 14 C 1.39498 * 120.10553 * 54.54416 * 13 11 2 15 15 C 1.39006 * 119.73553 * 179.81765 * 14 13 11 16 16 C 1.48405 * 120.02690 * 180.18778 * 15 14 13 17 17 C 1.39326 * 120.12279 * 359.97438 * 16 15 14 18 18 C 1.38022 * 119.87851 * 179.74507 * 17 16 15 19 19 C 1.38322 * 120.12059 * 0.52694 * 18 17 16 20 20 C 1.38316 * 120.24052 * 359.72711 * 19 18 17 21 21 C 1.38016 * 120.12292 * 0.02562 * 20 19 18 22 22 C 1.39509 * 119.94541 * 0.44227 * 15 14 13 23 23 C 1.38068 * 120.20524 * 359.78620 * 22 15 14 24 24 C 1.38216 * 120.26516 * 0.02562 * 23 22 15 25 25 Cl 1.73597 * 119.97079 * 179.97438 * 24 23 22 26 26 H 1.09005 * 109.46725 * 185.12128 * 1 2 3 27 27 H 1.08998 * 109.47465 * 305.11967 * 1 2 3 28 28 H 1.09003 * 109.47174 * 65.12517 * 1 2 3 29 29 H 0.96999 * 120.00031 * 180.02562 * 6 5 3 30 30 H 1.07998 * 120.13233 * 0.02562 * 14 13 11 31 31 H 1.08003 * 120.05950 * 359.97438 * 17 16 15 32 32 H 1.08006 * 119.93818 * 180.25519 * 18 17 16 33 33 H 1.08004 * 119.87535 * 179.74200 * 19 18 17 34 34 H 1.08001 * 119.93772 * 180.02562 * 20 19 18 35 35 H 1.08003 * 120.06259 * 180.02562 * 21 20 19 36 36 H 1.08000 * 119.90080 * 179.76785 * 22 15 14 37 37 H 1.07999 * 119.86683 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1855 0.0000 4 1 3.2259 1.1876 0.0872 5 6 1.4587 2.3870 -0.1123 6 7 0.1450 2.3913 -0.1186 7 14 2.3987 3.9950 -0.2544 8 1 3.8576 3.7198 -0.2235 9 1 2.0482 4.6618 -1.5341 10 1 2.0375 4.8814 0.8808 11 6 2.1390 -1.1672 0.0005 12 8 3.3501 -1.1699 0.1088 13 6 1.4060 -2.4430 -0.1244 14 6 0.5375 -2.6490 -1.1964 15 6 -0.1457 -3.8544 -1.3085 16 6 -1.0681 -4.0819 -2.4486 17 6 -1.2520 -3.0888 -3.4082 18 6 -2.1071 -3.3078 -4.4693 19 6 -2.7892 -4.5065 -4.5751 20 6 -2.6144 -5.4939 -3.6224 21 6 -1.7579 -5.2874 -2.5600 22 6 0.0325 -4.8480 -0.3455 23 6 0.8891 -4.6398 0.7171 24 6 1.5757 -3.4460 0.8349 25 17 2.6503 -3.1922 2.1744 26 1 -0.3633 -1.0236 0.0917 27 1 -0.3634 0.5912 0.8405 28 1 -0.3634 0.4323 -0.9323 29 1 -0.3369 3.2295 -0.1973 30 1 0.3989 -1.8763 -1.9381 31 1 -0.7235 -2.1506 -3.3240 32 1 -2.2472 -2.5401 -5.2160 33 1 -3.4605 -4.6721 -5.4048 34 1 -3.1491 -6.4281 -3.7100 35 1 -1.6219 -6.0593 -1.8168 36 1 -0.5015 -5.7828 -0.4313 37 1 1.0226 -5.4126 1.4596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110675428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:29 Heat of formation + Delta-G solvation = 12.682047 kcal Electronic energy + Delta-G solvation = -23013.599203 eV Core-core repulsion = 19553.583872 eV Total energy + Delta-G solvation = -3460.015331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.077 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33210 -40.14762 -38.89460 -37.39766 -36.74231 -33.87125 -33.52676 -32.50458 -31.56531 -29.69243 -28.36569 -26.73098 -24.82969 -24.56566 -22.95220 -22.21437 -20.78266 -19.13494 -18.64798 -17.88468 -17.30751 -16.94907 -16.81847 -16.09982 -15.86750 -15.65827 -15.09145 -14.97253 -14.77337 -14.69436 -14.51038 -14.08325 -13.76513 -13.71087 -13.55906 -13.04235 -12.84515 -12.81185 -12.70598 -12.49365 -12.24897 -12.14315 -12.03920 -11.94836 -11.65766 -11.08995 -10.53807 -10.45395 -9.99585 -9.93438 -9.82307 -8.96945 -8.31389 -5.95847 -0.45443 0.04443 0.53411 0.80127 1.16162 1.33689 1.38647 1.53182 1.94215 2.21361 2.50748 2.95537 3.05785 3.10241 3.55753 3.64947 3.77816 4.06395 4.08884 4.15912 4.23206 4.34590 4.44855 4.53577 4.63832 4.69608 4.79919 4.91658 5.09024 5.12284 5.15247 5.19227 5.23656 5.38248 5.41126 5.56241 5.64572 5.69554 5.75588 5.96260 6.11642 6.40439 7.08560 7.37042 7.92956 8.60465 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.004779 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.060636 B = 5856.970973 C = 7867.061691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.446 5.446 3 C -0.340 4.340 4 H 0.079 0.921 5 C -0.002 4.002 6 N -0.892 5.892 7 Si 0.996 3.004 8 H -0.276 1.276 9 H -0.266 1.266 10 H -0.268 1.268 11 C 0.464 3.536 12 O -0.620 6.620 13 C -0.105 4.105 14 C -0.083 4.083 15 C -0.043 4.043 16 C -0.062 4.062 17 C -0.130 4.130 18 C -0.128 4.128 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.080 4.080 23 C -0.101 4.101 24 C -0.024 4.024 25 Cl -0.071 7.071 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.274 0.726 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.135 0.865 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.181 0.819 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.775 -16.541 -5.566 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.163 5.163 3 C -0.468 4.468 4 H 0.097 0.903 5 C -0.203 4.203 6 N -0.532 5.532 7 Si 0.819 3.181 8 H -0.200 1.200 9 H -0.191 1.191 10 H -0.193 1.193 11 C 0.253 3.747 12 O -0.508 6.508 13 C -0.109 4.109 14 C -0.102 4.102 15 C -0.044 4.044 16 C -0.062 4.062 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.137 4.137 20 C -0.137 4.137 21 C -0.126 4.126 22 C -0.097 4.097 23 C -0.119 4.119 24 C -0.052 4.052 25 Cl -0.042 7.042 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.142 0.858 31 H 0.128 0.872 32 H 0.153 0.847 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.170 0.830 36 H 0.198 0.802 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.284 -16.306 -5.398 20.020 hybrid contribution 0.879 1.598 0.208 1.836 sum -9.405 -14.709 -5.190 18.214 Atomic orbital electron populations 1.21696 0.78746 0.97832 1.02973 1.43834 1.07065 1.04612 1.60793 1.19831 0.92909 0.83723 1.50305 0.90260 1.26122 0.96784 1.02181 0.95216 1.70253 1.06578 1.28433 1.47906 0.84838 0.77941 0.76734 0.78609 1.20041 1.19094 1.19330 1.18309 0.87184 0.83982 0.85201 1.90581 1.15238 1.87310 1.57683 1.19814 0.99251 0.94655 0.97159 1.21314 0.94568 0.98051 0.96309 1.18938 0.96534 0.93196 0.95693 1.18782 0.97534 0.95877 0.93991 1.21429 0.99323 0.98830 0.95232 1.21342 0.96662 0.98738 0.97810 1.21603 0.99138 0.93101 0.99809 1.21483 0.98132 1.00314 0.93801 1.21533 0.95885 0.95934 0.99296 1.21642 0.96829 0.99727 0.91528 1.21262 0.95845 0.94694 1.00128 1.21290 0.96768 0.96316 0.90846 1.98362 1.64169 1.96988 1.44665 0.93221 0.92306 0.92616 0.91520 0.85789 0.87151 0.84701 0.83449 0.82715 0.82972 0.80173 0.81139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.30 8.05 127.77 1.03 7.33 16 2 N -0.45 -24.57 3.02 -662.38 -2.00 -26.57 16 3 C -0.34 -19.99 9.56 84.10 0.80 -19.19 16 4 H 0.08 4.99 7.17 -2.91 -0.02 4.97 16 5 C 0.00 -0.09 5.46 84.95 0.46 0.38 16 6 N -0.89 -46.95 9.44 21.68 0.20 -46.74 16 7 Si 1.00 43.04 29.56 68.60 2.03 45.07 16 8 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 9 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 11 C 0.46 24.80 6.49 86.73 0.56 25.36 16 12 O -0.62 -37.49 15.76 -4.02 -0.06 -37.55 16 13 C -0.10 -4.44 4.56 -20.10 -0.09 -4.54 16 14 C -0.08 -3.00 7.12 22.76 0.16 -2.84 16 15 C -0.04 -1.20 5.87 -20.08 -0.12 -1.32 16 16 C -0.06 -1.48 5.88 -20.04 -0.12 -1.60 16 17 C -0.13 -3.29 9.42 22.48 0.21 -3.08 16 18 C -0.13 -2.58 10.03 22.24 0.22 -2.36 16 19 C -0.12 -1.87 10.04 22.31 0.22 -1.64 16 20 C -0.12 -1.72 10.03 22.24 0.22 -1.50 16 21 C -0.11 -1.87 9.43 22.48 0.21 -1.66 16 22 C -0.08 -1.74 9.42 22.54 0.21 -1.53 16 23 C -0.10 -2.59 9.80 22.22 0.22 -2.37 16 24 C -0.02 -0.90 6.35 22.65 0.14 -0.75 16 25 Cl -0.07 -2.75 27.36 -2.72 -0.07 -2.82 16 26 H 0.05 2.11 5.22 -2.38 -0.01 2.10 16 27 H 0.06 3.02 6.89 -2.39 -0.02 3.00 16 28 H 0.06 2.74 7.20 -2.39 -0.02 2.72 16 29 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 30 H 0.12 4.65 5.91 -2.91 -0.02 4.63 16 31 H 0.11 3.09 6.20 -2.91 -0.02 3.07 16 32 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.15 1.68 6.20 -2.91 -0.02 1.66 16 36 H 0.18 2.22 6.19 -2.91 -0.02 2.20 16 37 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -72.53 325.49 5.57 -66.96 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 1.12 Total: 12.98 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.36 Total: -11.32 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.80 Total: -73.31 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.06 Total: -37.55 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -2.75 SS G_CDS: -0.07 Total: -2.82 kcal Total: -72.53 5.57 -66.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110675428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.638 kcal (2) G-P(sol) polarization free energy of solvation -72.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds