Wall clock time and date at job start Tue Mar 31 2020 10:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.47108 * 2 1 4 4 C 1.37095 * 120.00432 * 262.73657 * 3 2 1 5 5 H 1.07995 * 120.00173 * 139.80057 * 4 3 2 6 6 C 1.38953 * 119.99964 * 319.79875 * 4 3 2 7 7 N 1.31415 * 119.99856 * 347.16519 * 6 4 3 8 8 Si 1.86797 * 120.00174 * 167.15623 * 6 4 3 9 9 H 1.48496 * 109.47081 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.47013 * 120.00159 * 8 6 4 11 11 H 1.48494 * 109.47475 * 240.00115 * 8 6 4 12 12 C 1.34783 * 119.99732 * 82.74033 * 3 2 1 13 13 O 1.21291 * 119.99843 * 187.00880 * 12 3 2 14 14 C 1.50699 * 119.99990 * 7.01007 * 12 3 2 15 15 H 1.08999 * 109.46757 * 309.68910 * 14 12 3 16 16 C 1.52995 * 109.47299 * 69.69096 * 14 12 3 17 17 O 1.42905 * 109.46837 * 189.69511 * 14 12 3 18 18 C 1.35971 * 116.99591 * 158.57836 * 17 14 12 19 19 C 1.38682 * 120.03561 * 5.86237 * 18 17 14 20 20 C 1.38163 * 119.97504 * 180.25322 * 19 18 17 21 21 C 1.38464 * 120.05448 * 359.46914 * 20 19 18 22 22 F 1.35102 * 119.96534 * 180.25460 * 21 20 19 23 23 C 1.38426 * 120.06779 * 0.27647 * 21 20 19 24 24 C 1.38265 * 120.02112 * 359.97438 * 23 21 20 25 25 Cl 1.73601 * 120.02772 * 179.97438 * 24 23 21 26 26 H 1.09006 * 109.46513 * 59.99598 * 1 2 3 27 27 H 1.08993 * 109.47325 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47143 * 299.99873 * 1 2 3 29 29 H 1.08996 * 109.46727 * 240.00111 * 2 1 3 30 30 H 1.08993 * 109.46670 * 120.00201 * 2 1 3 31 31 H 0.97003 * 119.99994 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.46930 * 175.01101 * 16 14 12 33 33 H 1.08997 * 109.47220 * 295.01926 * 16 14 12 34 34 H 1.09009 * 109.46828 * 55.01951 * 16 14 12 35 35 H 1.07993 * 120.01446 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.96795 * 179.74487 * 20 19 18 37 37 H 1.08002 * 119.99071 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3884 1.9775 -1.1777 5 1 2.1332 3.0103 -1.3636 6 6 3.0919 1.2530 -2.1322 7 7 3.6209 0.0920 -1.8176 8 14 3.2853 1.9294 -3.8627 9 1 2.6023 3.2444 -3.9593 10 1 4.7284 2.0979 -4.1699 11 1 2.6795 0.9839 -4.8344 12 6 2.1039 2.0656 1.1579 13 8 2.3856 3.2453 1.1456 14 6 1.8496 1.3652 2.4678 15 1 0.9086 0.8182 2.4105 16 6 2.9913 0.3876 2.7535 17 8 1.7757 2.3315 3.5181 18 6 1.1264 1.9604 4.6536 19 6 0.6790 0.6562 4.8028 20 6 0.0148 0.2818 5.9549 21 6 -0.1950 1.2048 6.9655 22 9 -0.8402 0.8354 8.0936 23 6 0.2554 2.5058 6.8210 24 6 0.9159 2.8850 5.6671 25 17 1.4802 4.5167 5.4854 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 4.1123 -0.4136 -2.4839 32 1 2.8534 -0.0534 3.7407 33 1 2.9920 -0.4002 2.0003 34 1 3.9419 0.9203 2.7231 35 1 0.8465 -0.0655 4.0171 36 1 -0.3372 -0.7328 6.0692 37 1 0.0907 3.2248 7.6099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112802284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:04 Heat of formation + Delta-G solvation = -85.388302 kcal Electronic energy + Delta-G solvation = -24278.780582 eV Core-core repulsion = 20383.743377 eV Total energy + Delta-G solvation = -3895.037205 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.00407 -40.47499 -38.75462 -37.14152 -36.32692 -35.03933 -32.55889 -31.46222 -30.82985 -29.58171 -29.28807 -25.44505 -24.21649 -23.30096 -22.55145 -21.84308 -19.36940 -18.51441 -17.47858 -16.99368 -16.76294 -15.92333 -15.81306 -15.29938 -15.06234 -14.88788 -14.74917 -14.36266 -13.93602 -13.71489 -13.47815 -13.28304 -12.91427 -12.59905 -12.51715 -12.15233 -11.99949 -11.83060 -11.51016 -11.35796 -11.19351 -11.05728 -10.94833 -10.83842 -10.70548 -10.41130 -10.33165 -10.10361 -9.19433 -9.00870 -8.51712 -8.10994 -7.54172 -6.39612 -4.11575 0.80017 0.98002 2.08865 3.00725 3.12029 3.22731 3.26773 3.30293 3.70682 4.09495 4.13243 4.45980 4.60142 4.73448 4.83696 4.92675 5.11980 5.13612 5.31066 5.38500 5.45285 5.66853 5.68352 5.81732 5.85787 5.93562 5.97573 6.09341 6.20090 6.31477 6.43394 6.52212 6.78247 7.16260 7.31983 7.51296 8.19059 8.41989 9.07540 9.26362 9.85741 10.64252 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.022752 B = 0.003652 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.389614 B = 7665.135559 C = 8455.848910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 N -0.435 5.435 4 C -0.303 4.303 5 H 0.092 0.908 6 C 0.037 3.963 7 N -0.876 5.876 8 Si 0.924 3.076 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.470 3.530 13 O -0.554 6.554 14 C 0.066 3.934 15 H 0.085 0.915 16 C -0.178 4.178 17 O -0.266 6.266 18 C 0.144 3.856 19 C -0.177 4.177 20 C -0.105 4.105 21 C 0.060 3.940 22 F -0.138 7.138 23 C -0.107 4.107 24 C -0.049 4.049 25 Cl -0.039 7.039 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.117 0.883 30 H 0.054 0.946 31 H 0.268 0.732 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 -3.984 13.253 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.037 4.037 3 N -0.156 5.156 4 C -0.431 4.431 5 H 0.109 0.891 6 C -0.166 4.166 7 N -0.515 5.515 8 Si 0.750 3.250 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.255 3.745 13 O -0.435 6.435 14 C 0.006 3.994 15 H 0.102 0.898 16 C -0.235 4.235 17 O -0.177 6.177 18 C 0.095 3.905 19 C -0.196 4.196 20 C -0.124 4.124 21 C 0.041 3.959 22 F -0.117 7.117 23 C -0.127 4.127 24 C -0.077 4.077 25 Cl -0.010 7.010 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.135 0.865 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.168 0.832 36 H 0.161 0.839 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.265 -3.201 13.085 14.856 hybrid contribution -0.010 -0.104 -0.616 0.625 sum -6.274 -3.305 12.469 14.344 Atomic orbital electron populations 1.22271 0.98261 1.00545 1.01549 1.21845 0.91549 0.85625 1.04700 1.43305 1.56041 1.11864 1.04431 1.19502 1.33609 0.98430 0.91574 0.89078 1.25446 0.94312 0.96267 1.00612 1.69809 1.33079 1.13890 1.34691 0.85905 0.78207 0.79228 0.81648 1.19131 1.20642 1.20598 1.19815 0.82637 0.88251 0.83752 1.90579 1.50971 1.15517 1.86391 1.22595 1.00057 0.89749 0.86977 0.89769 1.22434 0.99165 0.99477 1.02399 1.86392 1.69067 1.40985 1.21244 1.18907 0.92210 0.91790 0.87549 1.21250 1.03171 0.95319 0.99898 1.21014 0.98914 1.00008 0.92422 1.17249 1.00626 0.93288 0.84767 1.91497 1.79410 1.91899 1.48912 1.20773 0.98929 0.95642 0.97340 1.19868 1.05190 0.87691 0.94956 1.98400 1.87681 1.17379 1.97532 0.92156 0.92782 0.94252 0.86517 0.92827 0.92161 0.91830 0.89014 0.90735 0.83152 0.83926 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 10.05 37.16 0.37 -2.43 16 2 C 0.09 1.73 5.22 -4.04 -0.02 1.71 16 3 N -0.44 -10.49 2.53 -114.82 -0.29 -10.78 16 4 C -0.30 -8.11 8.94 -14.93 -0.13 -8.24 16 5 H 0.09 2.58 7.71 -52.49 -0.40 2.17 16 6 C 0.04 0.95 5.08 -17.47 -0.09 0.86 16 7 N -0.88 -22.27 11.24 55.50 0.62 -21.65 16 8 Si 0.92 20.05 29.57 -169.99 -5.03 15.02 16 9 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 12 C 0.47 11.28 6.89 -10.98 -0.08 11.21 16 13 O -0.55 -15.68 16.41 -14.17 -0.23 -15.91 16 14 C 0.07 1.21 1.84 -27.89 -0.05 1.15 16 15 H 0.08 1.33 4.63 -51.93 -0.24 1.09 16 16 C -0.18 -2.83 8.76 37.15 0.33 -2.50 16 17 O -0.27 -5.00 8.83 -39.37 -0.35 -5.34 16 18 C 0.14 2.19 6.54 -39.21 -0.26 1.93 16 19 C -0.18 -2.16 8.06 -39.44 -0.32 -2.48 16 20 C -0.10 -1.10 10.02 -39.53 -0.40 -1.50 16 21 C 0.06 0.68 7.30 -39.43 -0.29 0.40 16 22 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 23 C -0.11 -1.26 9.80 -39.50 -0.39 -1.64 16 24 C -0.05 -0.70 6.33 -39.37 -0.25 -0.95 16 25 Cl -0.04 -0.58 28.50 -51.86 -1.48 -2.06 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.62 6.82 -51.93 -0.35 0.26 16 29 H 0.12 2.60 5.51 -51.93 -0.29 2.32 16 30 H 0.05 0.94 4.43 -51.93 -0.23 0.71 16 31 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 32 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 33 H 0.09 1.44 5.57 -51.93 -0.29 1.15 16 34 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 35 H 0.15 1.62 5.34 -52.49 -0.28 1.34 16 36 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -30.26 325.87 -7.04 -37.30 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.67 Total: 2.54 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.57 Total: -2.49 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.33 Total: -32.43 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.58 Total: -21.25 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.48 Total: -2.06 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.26 -7.04 -37.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112802284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.088 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds