Wall clock time and date at job start Tue Mar 31 2020 10:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.47108 * 2 1 4 4 C 1.37095 * 120.00432 * 262.73657 * 3 2 1 5 5 H 1.07995 * 120.00173 * 139.80057 * 4 3 2 6 6 C 1.38953 * 119.99964 * 319.79875 * 4 3 2 7 7 N 1.31415 * 119.99856 * 347.16519 * 6 4 3 8 8 Si 1.86797 * 120.00174 * 167.15623 * 6 4 3 9 9 H 1.48496 * 109.47081 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.47013 * 120.00159 * 8 6 4 11 11 H 1.48494 * 109.47475 * 240.00115 * 8 6 4 12 12 C 1.34783 * 119.99732 * 82.74033 * 3 2 1 13 13 O 1.21291 * 119.99843 * 187.00880 * 12 3 2 14 14 C 1.50699 * 119.99990 * 7.01007 * 12 3 2 15 15 H 1.08999 * 109.46757 * 309.68910 * 14 12 3 16 16 C 1.52995 * 109.47299 * 69.69096 * 14 12 3 17 17 O 1.42905 * 109.46837 * 189.69511 * 14 12 3 18 18 C 1.35971 * 116.99591 * 158.57836 * 17 14 12 19 19 C 1.38682 * 120.03561 * 5.86237 * 18 17 14 20 20 C 1.38163 * 119.97504 * 180.25322 * 19 18 17 21 21 C 1.38464 * 120.05448 * 359.46914 * 20 19 18 22 22 F 1.35102 * 119.96534 * 180.25460 * 21 20 19 23 23 C 1.38426 * 120.06779 * 0.27647 * 21 20 19 24 24 C 1.38265 * 120.02112 * 359.97438 * 23 21 20 25 25 Cl 1.73601 * 120.02772 * 179.97438 * 24 23 21 26 26 H 1.09006 * 109.46513 * 59.99598 * 1 2 3 27 27 H 1.08993 * 109.47325 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47143 * 299.99873 * 1 2 3 29 29 H 1.08996 * 109.46727 * 240.00111 * 2 1 3 30 30 H 1.08993 * 109.46670 * 120.00201 * 2 1 3 31 31 H 0.97003 * 119.99994 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.46930 * 175.01101 * 16 14 12 33 33 H 1.08997 * 109.47220 * 295.01926 * 16 14 12 34 34 H 1.09009 * 109.46828 * 55.01951 * 16 14 12 35 35 H 1.07993 * 120.01446 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.96795 * 179.74487 * 20 19 18 37 37 H 1.08002 * 119.99071 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3884 1.9775 -1.1777 5 1 2.1332 3.0103 -1.3636 6 6 3.0919 1.2530 -2.1322 7 7 3.6209 0.0920 -1.8176 8 14 3.2853 1.9294 -3.8627 9 1 2.6023 3.2444 -3.9593 10 1 4.7284 2.0979 -4.1699 11 1 2.6795 0.9839 -4.8344 12 6 2.1039 2.0656 1.1579 13 8 2.3856 3.2453 1.1456 14 6 1.8496 1.3652 2.4678 15 1 0.9086 0.8182 2.4105 16 6 2.9913 0.3876 2.7535 17 8 1.7757 2.3315 3.5181 18 6 1.1264 1.9604 4.6536 19 6 0.6790 0.6562 4.8028 20 6 0.0148 0.2818 5.9549 21 6 -0.1950 1.2048 6.9655 22 9 -0.8402 0.8354 8.0936 23 6 0.2554 2.5058 6.8210 24 6 0.9159 2.8850 5.6671 25 17 1.4802 4.5167 5.4854 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 4.1123 -0.4136 -2.4839 32 1 2.8534 -0.0534 3.7407 33 1 2.9920 -0.4002 2.0003 34 1 3.9419 0.9203 2.7231 35 1 0.8465 -0.0655 4.0171 36 1 -0.3372 -0.7328 6.0692 37 1 0.0907 3.2248 7.6099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112802284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:03 Heat of formation + Delta-G solvation = -101.860856 kcal Electronic energy + Delta-G solvation = -24279.494886 eV Core-core repulsion = 20383.743377 eV Total energy + Delta-G solvation = -3895.751509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.89757 -41.73130 -40.30072 -38.40516 -37.40631 -36.90521 -34.31140 -32.80193 -31.93124 -31.20047 -30.33150 -27.26954 -25.59167 -24.38879 -23.83439 -23.17405 -20.96942 -19.65430 -18.77180 -18.49564 -18.07833 -17.46247 -16.87640 -16.75155 -16.47545 -16.29335 -15.89510 -15.60569 -15.48793 -14.90486 -14.72299 -14.58287 -14.27496 -14.03848 -13.67755 -13.60363 -13.50781 -13.30218 -12.97387 -12.82874 -12.59007 -12.46752 -12.31942 -12.17175 -12.06087 -11.94246 -11.85954 -11.66018 -10.86705 -10.38052 -10.11902 -9.43234 -9.19519 -8.33474 -6.13404 -0.12179 -0.00114 1.03744 1.36428 1.42094 1.53692 1.77831 1.92306 2.31815 2.34233 2.98704 3.06258 3.20837 3.55958 3.60481 3.81228 3.88347 3.96116 3.99032 4.14880 4.26510 4.48563 4.60131 4.63042 4.64924 4.78340 4.85012 4.95508 4.98680 5.01604 5.19591 5.33300 5.44459 5.53037 5.60242 6.11102 6.25302 6.55130 7.15096 7.39142 7.98680 8.68245 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.022752 B = 0.003652 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.389614 B = 7665.135559 C = 8455.848910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.083 3.917 3 N -0.443 5.443 4 C -0.340 4.340 5 H 0.059 0.941 6 C 0.010 3.990 7 N -0.886 5.886 8 Si 0.981 3.019 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.261 1.261 12 C 0.451 3.549 13 O -0.615 6.615 14 C 0.080 3.920 15 H 0.114 0.886 16 C -0.169 4.169 17 O -0.299 6.299 18 C 0.114 3.886 19 C -0.171 4.171 20 C -0.089 4.089 21 C 0.065 3.935 22 F -0.135 7.135 23 C -0.103 4.103 24 C -0.064 4.064 25 Cl -0.059 7.059 26 H 0.039 0.961 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.275 0.725 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.170 0.830 36 H 0.179 0.821 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 -6.851 14.416 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.040 4.040 3 N -0.163 5.163 4 C -0.468 4.468 5 H 0.076 0.924 6 C -0.193 4.193 7 N -0.523 5.523 8 Si 0.805 3.195 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.186 1.186 12 C 0.239 3.761 13 O -0.501 6.501 14 C 0.021 3.979 15 H 0.132 0.868 16 C -0.226 4.226 17 O -0.212 6.212 18 C 0.067 3.933 19 C -0.190 4.190 20 C -0.107 4.107 21 C 0.045 3.955 22 F -0.114 7.114 23 C -0.122 4.122 24 C -0.092 4.092 25 Cl -0.030 7.030 26 H 0.058 0.942 27 H 0.111 0.889 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.187 0.813 36 H 0.196 0.804 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.529 -6.128 14.261 17.251 hybrid contribution 0.339 0.749 -0.870 1.197 sum -7.190 -5.379 13.390 16.122 Atomic orbital electron populations 1.22190 0.95536 1.02920 1.01113 1.22019 0.93781 0.83254 1.04920 1.43560 1.55548 1.13211 1.03933 1.19385 1.35803 0.97819 0.93840 0.92357 1.26056 0.93462 0.96440 1.03333 1.69863 1.32557 1.14160 1.35768 0.85066 0.78015 0.78535 0.77879 1.20098 1.20409 1.18591 1.20794 0.81626 0.87851 0.85817 1.90524 1.53676 1.18231 1.87633 1.22329 1.02160 0.89111 0.84276 0.86826 1.22394 0.96917 0.98564 1.04701 1.86333 1.70535 1.41852 1.22435 1.19207 0.93753 0.93530 0.86775 1.21433 1.02527 0.94087 1.00911 1.21355 0.97087 1.01343 0.90963 1.17360 0.99988 0.93175 0.84984 1.91517 1.79259 1.91792 1.48821 1.20930 0.97966 0.96511 0.96828 1.20048 1.06368 0.86879 0.95896 1.98389 1.88065 1.18918 1.97662 0.94162 0.88868 0.93184 0.88746 0.90040 0.91506 0.87903 0.88636 0.93374 0.81304 0.80357 0.81586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 10.05 71.98 0.72 -4.26 16 2 C 0.08 3.21 5.22 86.38 0.45 3.66 16 3 N -0.44 -21.82 2.53 -635.55 -1.61 -23.42 16 4 C -0.34 -18.96 8.94 84.04 0.75 -18.20 16 5 H 0.06 3.55 7.71 -2.91 -0.02 3.52 16 6 C 0.01 0.51 5.08 84.93 0.43 0.94 16 7 N -0.89 -44.91 11.24 21.66 0.24 -44.67 16 8 Si 0.98 41.54 29.57 68.60 2.03 43.57 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 12 C 0.45 22.35 6.89 87.66 0.60 22.96 16 13 O -0.62 -36.97 16.41 15.79 0.26 -36.71 16 14 C 0.08 2.88 1.84 29.85 0.05 2.94 16 15 H 0.11 3.30 4.63 -2.39 -0.01 3.29 16 16 C -0.17 -5.10 8.76 71.98 0.63 -4.47 16 17 O -0.30 -11.26 8.83 -74.36 -0.66 -11.92 16 18 C 0.11 3.31 6.54 22.51 0.15 3.46 16 19 C -0.17 -3.53 8.06 22.36 0.18 -3.35 16 20 C -0.09 -1.47 10.02 22.31 0.22 -1.24 16 21 C 0.06 1.24 7.30 22.37 0.16 1.40 16 22 F -0.14 -2.57 17.27 44.97 0.78 -1.79 16 23 C -0.10 -2.20 9.80 22.32 0.22 -1.98 16 24 C -0.06 -1.77 6.33 22.41 0.14 -1.63 16 25 Cl -0.06 -1.81 28.50 -2.72 -0.08 -1.89 16 26 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 1.44 6.82 -2.39 -0.02 1.43 16 29 H 0.09 4.15 5.51 -2.39 -0.01 4.13 16 30 H 0.08 2.66 4.43 -2.39 -0.01 2.65 16 31 H 0.28 12.99 8.31 -92.71 -0.77 12.22 16 32 H 0.10 2.27 6.54 -2.39 -0.02 2.26 16 33 H 0.10 2.78 5.57 -2.39 -0.01 2.77 16 34 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.17 2.81 5.34 -2.91 -0.02 2.79 16 36 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -70.38 325.87 6.81 -63.57 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.13 Total: 13.03 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 4.72 Total: 0.23 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -1.37 Total: -68.09 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -0.40 Total: -48.63 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.89 kcal Total: -70.38 6.81 -63.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112802284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.293 kcal (2) G-P(sol) polarization free energy of solvation -70.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds