Wall clock time and date at job start Tue Mar 31 2020 10:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47077 * 2 1 4 4 C 1.37097 * 119.99562 * 262.91783 * 3 2 1 5 5 H 1.08005 * 119.99767 * 194.52421 * 4 3 2 6 6 C 1.38949 * 120.00227 * 14.52324 * 4 3 2 7 7 N 1.31403 * 120.00216 * 18.89423 * 6 4 3 8 8 Si 1.86804 * 119.99870 * 198.89440 * 6 4 3 9 9 H 1.48500 * 109.47015 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47352 * 120.00289 * 8 6 4 11 11 H 1.48504 * 109.46924 * 240.00028 * 8 6 4 12 12 C 1.34771 * 120.00125 * 82.91587 * 3 2 1 13 13 O 1.21290 * 120.00127 * 6.00801 * 12 3 2 14 14 C 1.50702 * 119.99882 * 186.01057 * 12 3 2 15 15 H 1.08990 * 109.47132 * 47.93746 * 14 12 3 16 16 C 1.52996 * 109.46821 * 287.93413 * 14 12 3 17 17 O 1.42898 * 109.46757 * 167.93932 * 14 12 3 18 18 C 1.35979 * 117.00000 * 205.32843 * 17 14 12 19 19 C 1.38681 * 120.02907 * 354.95406 * 18 17 14 20 20 C 1.38162 * 119.98156 * 180.23250 * 19 18 17 21 21 C 1.38468 * 120.04779 * 359.49165 * 20 19 18 22 22 F 1.35096 * 119.96450 * 180.23453 * 21 20 19 23 23 C 1.38433 * 120.06773 * 0.51308 * 21 20 19 24 24 C 1.38265 * 120.01712 * 359.73805 * 23 21 20 25 25 Cl 1.73604 * 120.02264 * 179.97438 * 24 23 21 26 26 H 1.08999 * 109.47206 * 59.78909 * 1 2 3 27 27 H 1.09001 * 109.47349 * 179.79154 * 1 2 3 28 28 H 1.09006 * 109.47040 * 299.79061 * 1 2 3 29 29 H 1.09000 * 109.46843 * 239.99948 * 2 1 3 30 30 H 1.08996 * 109.46755 * 119.99895 * 2 1 3 31 31 H 0.97002 * 120.00394 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47490 * 294.11720 * 16 14 12 33 33 H 1.09003 * 109.46892 * 54.11992 * 16 14 12 34 34 H 1.08998 * 109.47164 * 174.11055 * 16 14 12 35 35 H 1.08002 * 120.01406 * 359.95764 * 19 18 17 36 36 H 1.07998 * 119.97308 * 179.75105 * 20 19 18 37 37 H 1.08004 * 119.98946 * 179.77179 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3849 1.9787 -1.1783 5 1 2.9575 2.8943 -1.1642 6 6 2.0197 1.4062 -2.3905 7 7 1.0388 0.5329 -2.4358 8 14 2.9231 1.8779 -3.9560 9 1 3.9779 2.8736 -3.6379 10 1 3.5465 0.6687 -4.5514 11 1 1.9627 2.4669 -4.9235 12 6 2.1073 2.0646 1.1582 13 8 1.8879 1.5043 2.2113 14 6 2.4793 3.5249 1.1449 15 1 1.8771 4.0464 0.4011 16 6 3.9614 3.6704 0.7943 17 8 2.2373 4.0898 2.4349 18 6 2.0021 5.4280 2.4886 19 6 2.1075 6.1978 1.3399 20 6 1.8731 7.5583 1.3966 21 6 1.5227 8.1520 2.5974 22 9 1.2892 9.4816 2.6499 23 6 1.4170 7.3856 3.7453 24 6 1.6560 6.0248 3.6929 25 17 1.5242 5.0635 5.1325 26 1 -0.3633 0.5171 -0.8881 27 1 -0.3634 -1.0277 -0.0037 28 1 -0.3633 0.5106 0.8919 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.7836 0.1335 -3.2821 32 1 4.5673 3.2398 1.5915 33 1 4.1666 3.1485 -0.1404 34 1 4.2062 4.7265 0.6819 35 1 2.3771 5.7348 0.4022 36 1 1.9591 8.1583 0.5027 37 1 1.1472 7.8506 4.6820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112802286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:05 Heat of formation + Delta-G solvation = -91.715601 kcal Electronic energy + Delta-G solvation = -24338.746102 eV Core-core repulsion = 20443.434525 eV Total energy + Delta-G solvation = -3895.311578 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.90095 -41.65122 -40.32590 -38.41942 -37.39828 -36.88990 -33.68676 -33.31860 -32.08645 -31.08091 -30.21164 -26.94982 -25.61520 -24.60277 -23.84331 -22.81590 -21.00107 -19.60609 -19.32797 -18.46278 -17.82982 -17.45950 -16.86799 -16.51736 -16.28472 -16.12021 -15.85379 -15.57051 -15.30227 -15.16890 -14.61015 -14.49855 -14.24007 -14.02653 -13.84530 -13.58349 -13.22373 -13.15554 -12.87382 -12.84581 -12.52530 -12.40817 -12.21486 -12.01264 -12.00347 -11.82915 -11.81983 -11.59330 -10.89707 -10.29963 -10.10913 -9.73305 -9.17090 -8.24585 -5.88361 -0.11683 0.01130 1.03831 1.42987 1.55367 1.65868 1.76220 1.99631 2.32561 2.35251 3.03901 3.13651 3.20989 3.58662 3.69954 3.89005 4.04010 4.07238 4.11624 4.20465 4.48940 4.55041 4.72390 4.77463 4.79480 4.83018 4.91217 4.96896 5.01702 5.08896 5.14076 5.39791 5.46951 5.55126 5.80393 5.84441 6.19394 6.49826 7.12924 7.55154 7.96581 8.72816 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.004303 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.651693 B = 6505.144562 C = 7702.496668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.139 3.861 3 N -0.439 5.439 4 C -0.367 4.367 5 H 0.127 0.873 6 C 0.001 3.999 7 N -0.877 5.877 8 Si 0.985 3.015 9 H -0.250 1.250 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.440 3.560 13 O -0.631 6.631 14 C 0.090 3.910 15 H 0.104 0.896 16 C -0.171 4.171 17 O -0.297 6.297 18 C 0.118 3.882 19 C -0.173 4.173 20 C -0.092 4.092 21 C 0.064 3.936 22 F -0.135 7.135 23 C -0.102 4.102 24 C -0.063 4.063 25 Cl -0.056 7.056 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.009 0.991 29 H 0.088 0.912 30 H 0.027 0.973 31 H 0.272 0.728 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 13.407 2.238 13.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.016 3.984 3 N -0.157 5.157 4 C -0.493 4.493 5 H 0.144 0.856 6 C -0.202 4.202 7 N -0.515 5.515 8 Si 0.809 3.191 9 H -0.174 1.174 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.228 3.772 13 O -0.519 6.519 14 C 0.031 3.969 15 H 0.121 0.879 16 C -0.228 4.228 17 O -0.210 6.210 18 C 0.071 3.929 19 C -0.192 4.192 20 C -0.110 4.110 21 C 0.044 3.956 22 F -0.114 7.114 23 C -0.121 4.121 24 C -0.091 4.091 25 Cl -0.027 7.027 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.028 0.972 29 H 0.106 0.894 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.181 0.819 36 H 0.193 0.807 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.752 12.791 2.869 13.395 hybrid contribution -0.025 -0.252 -0.557 0.612 sum 2.727 12.539 2.312 13.039 Atomic orbital electron populations 1.21908 0.96020 1.00599 1.00306 1.21091 0.94977 0.83050 0.99257 1.43906 1.54712 1.11303 1.05747 1.20424 1.34441 1.11955 0.82522 0.85562 1.26109 0.95424 0.96634 1.02063 1.70192 1.24391 1.29199 1.27688 0.84984 0.78498 0.78388 0.77227 1.17353 1.21049 1.20866 1.20212 0.84122 0.88846 0.83987 1.90535 1.58001 1.71124 1.32253 1.22046 0.99593 0.92063 0.83208 0.87865 1.22394 0.92155 1.04532 1.03730 1.86280 1.84428 1.18666 1.31623 1.19172 0.95938 0.83959 0.93854 1.21407 1.05578 0.94215 0.98013 1.21326 0.97251 0.94373 0.98061 1.17334 1.05809 0.78000 0.94457 1.91510 1.92499 1.30252 1.97123 1.20931 1.00741 0.90350 1.00118 1.20011 1.09785 0.92076 0.87230 1.98381 1.96596 1.71715 1.36036 0.90187 0.92677 0.97196 0.89364 0.95473 0.91807 0.92400 0.88511 0.88794 0.81851 0.80750 0.81382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.05 9.66 71.98 0.70 -5.35 16 2 C 0.14 6.76 5.27 86.38 0.46 7.21 16 3 N -0.44 -21.19 2.64 -635.53 -1.68 -22.87 16 4 C -0.37 -16.41 8.45 84.04 0.71 -15.70 16 5 H 0.13 4.96 4.65 -2.91 -0.01 4.95 16 6 C 0.00 0.06 4.98 84.93 0.42 0.48 16 7 N -0.88 -41.16 8.35 21.66 0.18 -40.98 16 8 Si 0.99 34.70 29.59 68.60 2.03 36.73 16 9 H -0.25 -8.07 7.11 99.48 0.71 -7.37 16 10 H -0.28 -10.28 7.11 99.48 0.71 -9.58 16 11 H -0.28 -10.03 7.11 99.48 0.71 -9.32 16 12 C 0.44 21.34 6.94 87.66 0.61 21.94 16 13 O -0.63 -35.38 16.21 15.70 0.25 -35.13 16 14 C 0.09 3.41 1.82 29.85 0.05 3.47 16 15 H 0.10 3.63 5.85 -2.39 -0.01 3.62 16 16 C -0.17 -5.31 8.83 71.98 0.64 -4.68 16 17 O -0.30 -11.55 8.82 -74.56 -0.66 -12.21 16 18 C 0.12 3.67 6.60 22.51 0.15 3.82 16 19 C -0.17 -4.21 8.32 22.36 0.19 -4.03 16 20 C -0.09 -1.81 10.02 22.31 0.22 -1.58 16 21 C 0.06 1.36 7.30 22.37 0.16 1.52 16 22 F -0.14 -2.82 17.26 44.97 0.78 -2.05 16 23 C -0.10 -2.33 9.80 22.32 0.22 -2.11 16 24 C -0.06 -1.83 6.33 22.41 0.14 -1.68 16 25 Cl -0.06 -1.73 28.50 -2.72 -0.08 -1.80 16 26 H 0.08 3.92 6.10 -2.39 -0.01 3.91 16 27 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.09 4.34 6.03 -2.39 -0.01 4.32 16 30 H 0.03 1.34 7.56 -2.39 -0.02 1.33 16 31 H 0.27 12.07 8.31 -92.71 -0.77 11.30 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.10 3.07 5.45 -2.39 -0.01 3.05 16 34 H 0.09 2.23 6.92 -2.39 -0.02 2.22 16 35 H 0.16 3.56 5.37 -2.91 -0.02 3.55 16 36 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -59.78 323.80 6.62 -53.16 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 1.13 Total: 21.84 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 4.66 Total: 3.31 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -1.50 Total: -63.86 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -0.40 Total: -47.34 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 2.03 Total: 36.73 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.80 kcal Total: -59.78 6.62 -53.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112802286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.554 kcal (2) G-P(sol) polarization free energy of solvation -59.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds