Wall clock time and date at job start Tue Mar 31 2020 11:03:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42908 * 1
3 3 C 1.42897 * 113.99554 * 2 1
4 4 C 1.52999 * 109.46956 * 179.97438 * 3 2 1
5 5 N 1.46909 * 109.46872 * 63.98380 * 4 3 2
6 6 C 1.46901 * 110.99569 * 75.81477 * 5 4 3
7 7 C 1.50707 * 109.46670 * 199.59017 * 6 5 4
8 8 H 1.08004 * 119.99912 * 354.91821 * 7 6 5
9 9 C 1.37876 * 119.99648 * 175.19490 * 7 6 5
10 10 N 1.31510 * 120.00391 * 359.72245 * 9 7 6
11 11 Si 1.86801 * 119.99767 * 179.72498 * 9 7 6
12 12 H 1.48502 * 109.47219 * 60.00157 * 11 9 7
13 13 H 1.48498 * 109.47315 * 179.97438 * 11 9 7
14 14 H 1.48493 * 109.47134 * 299.99898 * 11 9 7
15 15 C 1.39071 * 110.99917 * 199.76444 * 5 4 3
16 16 N 1.32415 * 119.69262 * 295.45984 * 15 5 4
17 17 C 1.31947 * 121.63514 * 179.71190 * 16 15 5
18 18 C 1.38171 * 120.83813 * 0.56736 * 17 16 15
19 19 Cl 1.73602 * 120.35053 * 179.74577 * 18 17 16
20 20 C 1.38919 * 119.29988 * 359.71843 * 18 17 16
21 21 C 1.38346 * 118.49823 * 0.02562 * 20 18 17
22 22 N 1.48008 * 120.44750 * 179.97438 * 21 20 18
23 23 O 1.21798 * 119.99797 * 5.17365 * 22 21 20
24 24 O 1.21800 * 120.00168 * 185.16328 * 22 21 20
25 25 H 1.09006 * 109.46774 * 179.97438 * 1 2 3
26 26 H 1.08992 * 109.47376 * 300.00120 * 1 2 3
27 27 H 1.08998 * 109.46967 * 60.00512 * 1 2 3
28 28 H 1.08999 * 109.47355 * 60.00337 * 3 2 1
29 29 H 1.08999 * 109.47364 * 299.99603 * 3 2 1
30 30 H 1.09001 * 109.47294 * 303.98857 * 4 3 2
31 31 H 1.08996 * 109.47743 * 183.98253 * 4 3 2
32 32 H 1.08995 * 109.47629 * 79.59117 * 6 5 4
33 33 H 1.08993 * 109.47007 * 319.58642 * 6 5 4
34 34 H 0.96996 * 120.00104 * 180.02562 * 10 9 7
35 35 H 1.08001 * 119.58049 * 180.26561 * 17 16 15
36 36 H 1.08005 * 120.75296 * 180.02562 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 7 3.9761 0.5402 -1.2438
6 6 3.9088 1.4764 -2.3738
7 6 3.8917 0.7025 -3.6669
8 1 4.0099 -0.3710 -3.6553
9 6 3.7309 1.3655 -4.8650
10 7 3.5870 2.6726 -4.8791
11 14 3.7175 0.4071 -6.4684
12 1 2.6031 -0.5743 -6.4491
13 1 3.5306 1.3451 -7.6043
14 1 5.0073 -0.3115 -6.6263
15 6 5.2567 0.0155 -1.1069
16 7 6.2802 0.8294 -0.8985
17 6 7.5100 0.3727 -0.7575
18 6 7.7761 -0.9809 -0.8346
19 17 9.4000 -1.5674 -0.6538
20 6 6.7303 -1.8677 -1.0578
21 6 5.4514 -1.3587 -1.1962
22 7 4.3055 -2.2643 -1.4358
23 8 4.4692 -3.4711 -1.4186
24 8 3.1989 -1.8028 -1.6500
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5138 0.8899
27 1 -0.3633 0.5137 -0.8900
28 1 1.6886 1.8464 0.8900
29 1 1.6886 1.8464 -0.8900
30 1 3.8520 0.5835 0.8530
31 1 3.9786 2.1780 0.0720
32 1 4.7789 2.1325 -2.3546
33 1 3.0010 2.0746 -2.2965
34 1 3.4735 3.1390 -5.7220
35 1 8.3197 1.0662 -0.5844
36 1 6.9116 -2.9305 -1.1219
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000129747012.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:03:16
Heat of formation + Delta-G solvation = -6.343562 kcal
Electronic energy + Delta-G solvation = -25096.154754 eV
Core-core repulsion = 21224.465147 eV
Total energy + Delta-G solvation = -3871.689607 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.082 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-43.16199 -41.71337 -39.20838 -38.12352 -37.51418 -37.14178 -34.79637 -34.30940
-32.33971 -30.72856 -28.73751 -27.63865 -26.87363 -25.35230 -24.33427 -23.82201
-22.07028 -20.35128 -19.68816 -18.94570 -18.44366 -18.25686 -17.74481 -17.36802
-17.01809 -16.77515 -16.19941 -16.05939 -15.58786 -15.14029 -14.88725 -14.76346
-14.33747 -13.84773 -13.47817 -13.22565 -13.06989 -12.76830 -12.67987 -12.52992
-12.51365 -12.48034 -12.13009 -12.08311 -11.90793 -11.76471 -11.62705 -11.45330
-11.22944 -10.65524 -10.38422 -10.22107 -9.46109 -8.24679 -6.31315 -1.28555
-0.55811 0.27205 0.35181 0.77471 1.33107 1.36377 1.44100 2.02921
2.28647 2.43899 3.00427 3.05846 3.09480 3.21584 3.41099 3.49114
3.82268 4.07883 4.19348 4.33159 4.48637 4.52367 4.61323 4.66146
4.71746 4.89570 4.98629 5.03340 5.14411 5.39487 5.54745 5.90705
6.14056 6.24097 6.30287 6.50599 6.75063 6.80947 7.35405 8.85356
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.009642 B = 0.006382 C = 0.004989
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2903.359328 B = 4386.493813 C = 5610.582661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.391 6.391
3 C 0.075 3.925
4 C 0.067 3.933
5 N -0.483 5.483
6 C 0.219 3.781
7 C -0.515 4.515
8 H 0.044 0.956
9 C 0.017 3.983
10 N -0.922 5.922
11 Si 0.948 3.052
12 H -0.273 1.273
13 H -0.274 1.274
14 H -0.276 1.276
15 C 0.390 3.610
16 N -0.505 5.505
17 C 0.181 3.819
18 C -0.099 4.099
19 Cl -0.006 7.006
20 C 0.000 4.000
21 C -0.087 4.087
22 N 0.030 4.970
23 O -0.208 6.208
24 O -0.092 6.092
25 H 0.089 0.911
26 H 0.055 0.945
27 H 0.032 0.968
28 H 0.081 0.919
29 H 0.038 0.962
30 H 0.074 0.926
31 H 0.067 0.933
32 H -0.007 1.007
33 H 0.029 0.971
34 H 0.266 0.734
35 H 0.217 0.783
36 H 0.189 0.811
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.117 -4.362 12.369 14.922
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.310 6.310
3 C -0.002 4.002
4 C -0.059 4.059
5 N -0.207 5.207
6 C 0.095 3.905
7 C -0.554 4.554
8 H 0.062 0.938
9 C -0.182 4.182
10 N -0.563 5.563
11 Si 0.773 3.227
12 H -0.198 1.198
13 H -0.199 1.199
14 H -0.202 1.202
15 C 0.161 3.839
16 N -0.218 5.218
17 C 0.021 3.979
18 C -0.129 4.129
19 Cl 0.023 6.977
20 C -0.027 4.027
21 C -0.175 4.175
22 N 0.550 4.450
23 O -0.409 6.409
24 O -0.323 6.323
25 H 0.108 0.892
26 H 0.074 0.926
27 H 0.051 0.949
28 H 0.099 0.901
29 H 0.056 0.944
30 H 0.093 0.907
31 H 0.086 0.914
32 H 0.010 0.990
33 H 0.047 0.953
34 H 0.075 0.925
35 H 0.234 0.766
36 H 0.207 0.793
Dipole moment (debyes) X Y Z Total
from point charges 7.449 -3.580 12.342 14.854
hybrid contribution 0.044 -0.561 -1.145 1.275
sum 7.493 -4.141 11.198 14.096
Atomic orbital electron populations
1.22796 0.80616 1.03131 0.99997 1.88014 1.20322 1.27331 1.95307
1.22481 0.91936 0.85401 1.00431 1.22160 0.95461 0.98275 0.90000
1.60524 1.14642 1.39594 1.05975 1.19543 0.95896 0.89075 0.85989
1.21210 1.49330 0.93370 0.91486 0.93759 1.25582 0.94985 0.95697
1.01970 1.70002 1.50479 1.08127 1.27655 0.85763 0.78676 0.78733
0.79495 1.19833 1.19924 1.20160 1.20007 0.91025 0.87908 0.84911
1.68559 1.00286 1.37887 1.15083 1.23755 0.94208 0.92939 0.87011
1.21775 0.88819 0.94104 1.08187 1.98413 1.15385 1.88214 1.95721
1.21536 0.87623 1.03731 0.89784 1.22047 0.88188 0.90477 1.16800
1.43306 1.02611 1.00741 0.98333 1.94411 1.91165 0.97707 1.57652
1.94784 1.09223 1.80272 1.48059 0.89242 0.92612 0.94941 0.90135
0.94414 0.90717 0.91448 0.98965 0.95263 0.92504 0.76637 0.79344
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.86 11.01 113.37 1.25 2.11 16
2 O -0.39 -14.12 10.53 -148.98 -1.57 -15.69 16
3 C 0.07 2.47 6.11 71.98 0.44 2.91 16
4 C 0.07 2.36 5.17 86.30 0.45 2.81 16
5 N -0.48 -20.79 2.19 -706.14 -1.55 -22.34 16
6 C 0.22 11.18 4.53 85.56 0.39 11.57 16
7 C -0.52 -29.26 8.96 25.60 0.23 -29.03 16
8 H 0.04 2.60 7.28 -2.91 -0.02 2.58 16
9 C 0.02 0.96 5.46 84.65 0.46 1.42 16
10 N -0.92 -53.95 13.29 21.45 0.28 -53.67 16
11 Si 0.95 45.31 29.54 68.60 2.03 47.33 16
12 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16
13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16
14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16
15 C 0.39 15.30 4.80 133.02 0.64 15.94 16
16 N -0.50 -17.28 9.45 -193.14 -1.82 -19.11 16
17 C 0.18 4.47 10.97 84.66 0.93 5.40 16
18 C -0.10 -2.29 6.34 22.42 0.14 -2.14 16
19 Cl -0.01 -0.11 28.99 -2.72 -0.08 -0.19 16
20 C 0.00 0.01 9.47 22.46 0.21 0.22 16
21 C -0.09 -3.22 6.88 36.60 0.25 -2.97 16
22 N 0.03 1.26 4.45 -45.93 -0.20 1.05 16
23 O -0.21 -8.22 18.53 18.89 0.35 -7.87 16
24 O -0.09 -4.35 16.52 18.89 0.31 -4.04 16
25 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16
26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
27 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16
28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16
29 H 0.04 1.42 6.68 -2.39 -0.02 1.40 16
30 H 0.07 2.43 7.91 -2.39 -0.02 2.41 16
31 H 0.07 2.25 8.00 -2.39 -0.02 2.23 16
32 H -0.01 -0.40 7.42 -2.39 -0.02 -0.42 16
33 H 0.03 1.59 6.46 -2.39 -0.02 1.58 16
34 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16
35 H 0.22 3.44 8.06 -2.91 -0.02 3.42 16
36 H 0.19 4.35 7.70 -2.91 -0.02 4.32 16
Total: -1.00 -69.02 334.89 4.25 -64.77
By element:
Atomic # 1 Polarization: 0.39 SS G_CDS: 1.12 Total: 1.51 kcal
Atomic # 6 Polarization: 2.84 SS G_CDS: 5.39 Total: 8.23 kcal
Atomic # 7 Polarization: -90.77 SS G_CDS: -3.29 Total: -94.06 kcal
Atomic # 8 Polarization: -26.69 SS G_CDS: -0.91 Total: -27.60 kcal
Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal
Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.19 kcal
Total: -69.02 4.25 -64.77 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000129747012.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.426 kcal
(2) G-P(sol) polarization free energy of solvation -69.023 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.597 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.769 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.344 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds