Wall clock time and date at job start Tue Mar 31 2020 11:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99554 * 2 1 4 4 C 1.52999 * 109.46956 * 179.97438 * 3 2 1 5 5 N 1.46909 * 109.46872 * 63.98380 * 4 3 2 6 6 C 1.46901 * 110.99569 * 75.81477 * 5 4 3 7 7 C 1.50707 * 109.46670 * 199.59017 * 6 5 4 8 8 H 1.08004 * 119.99912 * 354.91821 * 7 6 5 9 9 C 1.37876 * 119.99648 * 175.19490 * 7 6 5 10 10 N 1.31510 * 120.00391 * 359.72245 * 9 7 6 11 11 Si 1.86801 * 119.99767 * 179.72498 * 9 7 6 12 12 H 1.48502 * 109.47219 * 60.00157 * 11 9 7 13 13 H 1.48498 * 109.47315 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47134 * 299.99898 * 11 9 7 15 15 C 1.39071 * 110.99917 * 199.76444 * 5 4 3 16 16 N 1.32415 * 119.69262 * 295.45984 * 15 5 4 17 17 C 1.31947 * 121.63514 * 179.71190 * 16 15 5 18 18 C 1.38171 * 120.83813 * 0.56736 * 17 16 15 19 19 Cl 1.73602 * 120.35053 * 179.74577 * 18 17 16 20 20 C 1.38919 * 119.29988 * 359.71843 * 18 17 16 21 21 C 1.38346 * 118.49823 * 0.02562 * 20 18 17 22 22 N 1.48008 * 120.44750 * 179.97438 * 21 20 18 23 23 O 1.21798 * 119.99797 * 5.17365 * 22 21 20 24 24 O 1.21800 * 120.00168 * 185.16328 * 22 21 20 25 25 H 1.09006 * 109.46774 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47376 * 300.00120 * 1 2 3 27 27 H 1.08998 * 109.46967 * 60.00512 * 1 2 3 28 28 H 1.08999 * 109.47355 * 60.00337 * 3 2 1 29 29 H 1.08999 * 109.47364 * 299.99603 * 3 2 1 30 30 H 1.09001 * 109.47294 * 303.98857 * 4 3 2 31 31 H 1.08996 * 109.47743 * 183.98253 * 4 3 2 32 32 H 1.08995 * 109.47629 * 79.59117 * 6 5 4 33 33 H 1.08993 * 109.47007 * 319.58642 * 6 5 4 34 34 H 0.96996 * 120.00104 * 180.02562 * 10 9 7 35 35 H 1.08001 * 119.58049 * 180.26561 * 17 16 15 36 36 H 1.08005 * 120.75296 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9761 0.5402 -1.2438 6 6 3.9088 1.4764 -2.3738 7 6 3.8917 0.7025 -3.6669 8 1 4.0099 -0.3710 -3.6553 9 6 3.7309 1.3655 -4.8650 10 7 3.5870 2.6726 -4.8791 11 14 3.7175 0.4071 -6.4684 12 1 2.6031 -0.5743 -6.4491 13 1 3.5306 1.3451 -7.6043 14 1 5.0073 -0.3115 -6.6263 15 6 5.2567 0.0155 -1.1069 16 7 6.2802 0.8294 -0.8985 17 6 7.5100 0.3727 -0.7575 18 6 7.7761 -0.9809 -0.8346 19 17 9.4000 -1.5674 -0.6538 20 6 6.7303 -1.8677 -1.0578 21 6 5.4514 -1.3587 -1.1962 22 7 4.3055 -2.2643 -1.4358 23 8 4.4692 -3.4711 -1.4186 24 8 3.1989 -1.8028 -1.6500 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8520 0.5835 0.8530 31 1 3.9786 2.1780 0.0720 32 1 4.7789 2.1325 -2.3546 33 1 3.0010 2.0746 -2.2965 34 1 3.4735 3.1390 -5.7220 35 1 8.3197 1.0662 -0.5844 36 1 6.9116 -2.9305 -1.1219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129747012.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:16 Heat of formation + Delta-G solvation = -6.343562 kcal Electronic energy + Delta-G solvation = -25096.154754 eV Core-core repulsion = 21224.465147 eV Total energy + Delta-G solvation = -3871.689607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.16199 -41.71337 -39.20838 -38.12352 -37.51418 -37.14178 -34.79637 -34.30940 -32.33971 -30.72856 -28.73751 -27.63865 -26.87363 -25.35230 -24.33427 -23.82201 -22.07028 -20.35128 -19.68816 -18.94570 -18.44366 -18.25686 -17.74481 -17.36802 -17.01809 -16.77515 -16.19941 -16.05939 -15.58786 -15.14029 -14.88725 -14.76346 -14.33747 -13.84773 -13.47817 -13.22565 -13.06989 -12.76830 -12.67987 -12.52992 -12.51365 -12.48034 -12.13009 -12.08311 -11.90793 -11.76471 -11.62705 -11.45330 -11.22944 -10.65524 -10.38422 -10.22107 -9.46109 -8.24679 -6.31315 -1.28555 -0.55811 0.27205 0.35181 0.77471 1.33107 1.36377 1.44100 2.02921 2.28647 2.43899 3.00427 3.05846 3.09480 3.21584 3.41099 3.49114 3.82268 4.07883 4.19348 4.33159 4.48637 4.52367 4.61323 4.66146 4.71746 4.89570 4.98629 5.03340 5.14411 5.39487 5.54745 5.90705 6.14056 6.24097 6.30287 6.50599 6.75063 6.80947 7.35405 8.85356 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.006382 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.359328 B = 4386.493813 C = 5610.582661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.075 3.925 4 C 0.067 3.933 5 N -0.483 5.483 6 C 0.219 3.781 7 C -0.515 4.515 8 H 0.044 0.956 9 C 0.017 3.983 10 N -0.922 5.922 11 Si 0.948 3.052 12 H -0.273 1.273 13 H -0.274 1.274 14 H -0.276 1.276 15 C 0.390 3.610 16 N -0.505 5.505 17 C 0.181 3.819 18 C -0.099 4.099 19 Cl -0.006 7.006 20 C 0.000 4.000 21 C -0.087 4.087 22 N 0.030 4.970 23 O -0.208 6.208 24 O -0.092 6.092 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.067 0.933 32 H -0.007 1.007 33 H 0.029 0.971 34 H 0.266 0.734 35 H 0.217 0.783 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 -4.362 12.369 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.002 4.002 4 C -0.059 4.059 5 N -0.207 5.207 6 C 0.095 3.905 7 C -0.554 4.554 8 H 0.062 0.938 9 C -0.182 4.182 10 N -0.563 5.563 11 Si 0.773 3.227 12 H -0.198 1.198 13 H -0.199 1.199 14 H -0.202 1.202 15 C 0.161 3.839 16 N -0.218 5.218 17 C 0.021 3.979 18 C -0.129 4.129 19 Cl 0.023 6.977 20 C -0.027 4.027 21 C -0.175 4.175 22 N 0.550 4.450 23 O -0.409 6.409 24 O -0.323 6.323 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.010 0.990 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.234 0.766 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 7.449 -3.580 12.342 14.854 hybrid contribution 0.044 -0.561 -1.145 1.275 sum 7.493 -4.141 11.198 14.096 Atomic orbital electron populations 1.22796 0.80616 1.03131 0.99997 1.88014 1.20322 1.27331 1.95307 1.22481 0.91936 0.85401 1.00431 1.22160 0.95461 0.98275 0.90000 1.60524 1.14642 1.39594 1.05975 1.19543 0.95896 0.89075 0.85989 1.21210 1.49330 0.93370 0.91486 0.93759 1.25582 0.94985 0.95697 1.01970 1.70002 1.50479 1.08127 1.27655 0.85763 0.78676 0.78733 0.79495 1.19833 1.19924 1.20160 1.20007 0.91025 0.87908 0.84911 1.68559 1.00286 1.37887 1.15083 1.23755 0.94208 0.92939 0.87011 1.21775 0.88819 0.94104 1.08187 1.98413 1.15385 1.88214 1.95721 1.21536 0.87623 1.03731 0.89784 1.22047 0.88188 0.90477 1.16800 1.43306 1.02611 1.00741 0.98333 1.94411 1.91165 0.97707 1.57652 1.94784 1.09223 1.80272 1.48059 0.89242 0.92612 0.94941 0.90135 0.94414 0.90717 0.91448 0.98965 0.95263 0.92504 0.76637 0.79344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 16 2 O -0.39 -14.12 10.53 -148.98 -1.57 -15.69 16 3 C 0.07 2.47 6.11 71.98 0.44 2.91 16 4 C 0.07 2.36 5.17 86.30 0.45 2.81 16 5 N -0.48 -20.79 2.19 -706.14 -1.55 -22.34 16 6 C 0.22 11.18 4.53 85.56 0.39 11.57 16 7 C -0.52 -29.26 8.96 25.60 0.23 -29.03 16 8 H 0.04 2.60 7.28 -2.91 -0.02 2.58 16 9 C 0.02 0.96 5.46 84.65 0.46 1.42 16 10 N -0.92 -53.95 13.29 21.45 0.28 -53.67 16 11 Si 0.95 45.31 29.54 68.60 2.03 47.33 16 12 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 C 0.39 15.30 4.80 133.02 0.64 15.94 16 16 N -0.50 -17.28 9.45 -193.14 -1.82 -19.11 16 17 C 0.18 4.47 10.97 84.66 0.93 5.40 16 18 C -0.10 -2.29 6.34 22.42 0.14 -2.14 16 19 Cl -0.01 -0.11 28.99 -2.72 -0.08 -0.19 16 20 C 0.00 0.01 9.47 22.46 0.21 0.22 16 21 C -0.09 -3.22 6.88 36.60 0.25 -2.97 16 22 N 0.03 1.26 4.45 -45.93 -0.20 1.05 16 23 O -0.21 -8.22 18.53 18.89 0.35 -7.87 16 24 O -0.09 -4.35 16.52 18.89 0.31 -4.04 16 25 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.42 6.68 -2.39 -0.02 1.40 16 30 H 0.07 2.43 7.91 -2.39 -0.02 2.41 16 31 H 0.07 2.25 8.00 -2.39 -0.02 2.23 16 32 H -0.01 -0.40 7.42 -2.39 -0.02 -0.42 16 33 H 0.03 1.59 6.46 -2.39 -0.02 1.58 16 34 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 35 H 0.22 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.19 4.35 7.70 -2.91 -0.02 4.32 16 Total: -1.00 -69.02 334.89 4.25 -64.77 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: 1.12 Total: 1.51 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 5.39 Total: 8.23 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -3.29 Total: -94.06 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.91 Total: -27.60 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.19 kcal Total: -69.02 4.25 -64.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129747012.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.426 kcal (2) G-P(sol) polarization free energy of solvation -69.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds