Wall clock time and date at job start Tue Mar 31 2020 11:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31304 * 1 3 3 Si 1.86799 * 119.99825 * 2 1 4 4 H 1.48501 * 109.46817 * 269.99679 * 3 2 1 5 5 H 1.48504 * 109.47360 * 29.99546 * 3 2 1 6 6 H 1.48493 * 109.47069 * 149.99919 * 3 2 1 7 7 C 1.38986 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00057 * 180.02562 * 7 2 1 9 9 N 1.37324 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.36500 * 126.06602 * 180.28660 * 9 7 2 11 11 C 1.35696 * 107.50514 * 180.15880 * 10 9 7 12 12 N 1.40526 * 126.08413 * 179.83971 * 11 10 9 13 13 C 1.34773 * 119.99906 * 179.71712 * 12 11 10 14 14 O 1.21637 * 119.99894 * 359.97438 * 13 12 11 15 15 C 1.47385 * 120.00490 * 179.97438 * 13 12 11 16 16 C 1.39294 * 120.25766 * 0.02562 * 15 13 12 17 17 C 1.38447 * 120.32309 * 180.02562 * 16 15 13 18 18 F 1.35103 * 119.70209 * 180.02562 * 17 16 15 19 19 C 1.38335 * 120.59896 * 359.97438 * 17 16 15 20 20 C 1.38702 * 120.15305 * 359.97438 * 19 17 16 21 21 N 1.38165 * 133.97465 * 180.02562 * 20 19 17 22 22 H 0.96997 * 126.42726 * 359.97438 * 21 20 19 23 23 C 1.35914 * 107.14532 * 179.97438 * 21 20 19 24 24 N 1.30272 * 110.02105 * 0.02562 * 23 21 20 25 25 C 1.34813 * 109.79234 * 0.02562 * 24 23 21 26 26 C 1.40668 * 107.82619 * 359.58241 * 11 10 9 27 27 N 1.30898 * 108.39248 * 0.25842 * 26 11 10 28 28 H 0.96999 * 120.00295 * 0.02562 * 1 2 3 29 29 H 1.08000 * 126.24123 * 0.03003 * 10 9 7 30 30 H 0.96993 * 119.99724 * 359.71492 * 12 11 10 31 31 H 1.07992 * 119.84054 * 359.97438 * 16 15 13 32 32 H 1.07993 * 119.92264 * 179.72715 * 19 17 16 33 33 H 1.07996 * 124.99092 * 180.02562 * 23 21 20 34 34 H 1.08002 * 125.80068 * 180.28822 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4945 2.0463 -1.4001 5 1 1.4444 2.6528 0.7000 6 1 3.5445 1.4402 0.7000 7 6 2.0080 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3214 -2.3929 0.0016 10 6 1.8751 -3.6405 0.0077 11 6 0.8579 -4.5386 0.0030 12 7 0.9890 -5.9377 0.0035 13 6 -0.1102 -6.7175 0.0042 14 8 -1.2157 -6.2103 0.0048 15 6 0.0272 -8.1850 0.0042 16 6 1.2906 -8.7716 0.0040 17 6 1.4212 -10.1499 0.0035 18 9 2.6527 -10.7056 0.0039 19 6 0.3023 -10.9633 0.0036 20 6 -0.9665 -10.4029 0.0048 21 7 -2.2458 -10.9247 0.0057 22 1 -2.4843 -11.8649 0.0052 23 6 -3.1073 -9.8735 0.0073 24 7 -2.4433 -8.7527 0.0069 25 6 -1.1193 -9.0065 0.0045 26 6 -0.3512 -3.8197 0.0034 27 7 -0.0715 -2.5410 0.0027 28 1 -0.4850 0.8400 -0.0004 29 1 2.9303 -3.8707 0.0131 30 1 1.8706 -6.3421 0.0034 31 1 2.1725 -8.1484 0.0035 32 1 0.4169 -12.0371 -0.0013 33 1 -4.1841 -9.9554 0.0086 34 1 -1.3419 -4.2498 0.0047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139342996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:26 Heat of formation + Delta-G solvation = 92.200102 kcal Electronic energy + Delta-G solvation = -24396.923380 eV Core-core repulsion = 20440.772243 eV Total energy + Delta-G solvation = -3956.151137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.13295 -42.41231 -39.85966 -38.62195 -36.79874 -34.17727 -33.38518 -33.11060 -30.71679 -30.07144 -29.27247 -27.62886 -25.11459 -24.17346 -22.71963 -22.14496 -21.05209 -20.48769 -19.38260 -18.51258 -18.02756 -17.29550 -17.06330 -16.03323 -15.98233 -15.66271 -15.36775 -15.22028 -14.91448 -14.52592 -14.33730 -14.15881 -13.72983 -13.30543 -13.08361 -12.95147 -12.80753 -12.09822 -11.63414 -11.59838 -11.35628 -11.22005 -10.94991 -10.89719 -10.50002 -10.17362 -10.07111 -9.10822 -9.10048 -8.81044 -8.74467 -8.33636 -7.99301 -6.62263 -6.50796 -4.16922 0.25337 0.98372 2.51499 2.51854 2.89493 3.05177 3.08281 3.13516 3.53504 3.59213 3.89534 3.90541 3.94969 4.08573 4.34774 4.54089 4.64548 4.80896 4.86325 4.91527 5.07192 5.07667 5.40786 5.51049 5.70921 5.79030 6.08826 6.30868 6.44469 6.53519 6.95811 6.98774 7.02632 7.19392 7.30139 7.70148 7.91515 8.24541 8.33746 8.69684 8.93014 9.43454 9.73171 10.45162 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.026195 B = 0.002853 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.654492 B = 9811.897197 C =10870.708036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.322 4.322 8 H 0.116 0.884 9 N -0.143 5.143 10 C -0.083 4.083 11 C -0.058 4.058 12 N -0.618 5.618 13 C 0.534 3.466 14 O -0.498 6.498 15 C -0.029 4.029 16 C -0.133 4.133 17 C 0.114 3.886 18 F -0.132 7.132 19 C -0.133 4.133 20 C 0.060 3.940 21 N -0.601 5.601 22 H 0.425 0.575 23 C 0.261 3.739 24 N -0.457 5.457 25 C 0.089 3.911 26 C -0.030 4.030 27 N -0.260 5.260 28 H 0.274 0.726 29 H 0.146 0.854 30 H 0.395 0.605 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.221 0.779 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 -22.691 0.017 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.089 4.911 10 C -0.235 4.235 11 C -0.163 4.163 12 N -0.261 5.261 13 C 0.319 3.681 14 O -0.373 6.373 15 C -0.034 4.034 16 C -0.155 4.155 17 C 0.093 3.907 18 F -0.111 7.111 19 C -0.155 4.155 20 C -0.051 4.051 21 N -0.213 5.213 22 H 0.264 0.736 23 C -0.025 4.025 24 N -0.174 5.174 25 C -0.033 4.033 26 C -0.205 4.205 27 N -0.091 5.091 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.229 0.771 31 H 0.166 0.834 32 H 0.156 0.844 33 H 0.238 0.762 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.468 -20.077 0.020 20.131 hybrid contribution 1.695 -1.918 -0.006 2.560 sum 0.227 -21.995 0.014 21.996 Atomic orbital electron populations 1.70224 1.06104 1.27933 1.35326 1.25642 0.95701 1.00241 0.95553 0.85832 0.79376 0.80023 0.78929 1.19623 1.20117 1.18837 1.19863 0.91646 0.80565 1.53395 0.86636 1.44556 1.04082 1.03279 1.39148 1.21249 0.96802 0.85366 1.20040 1.17240 0.94402 0.80991 1.23692 1.42424 1.07941 1.04641 1.71128 1.17650 0.84962 0.85104 0.80359 1.90764 1.25036 1.73618 1.47927 1.19180 0.90166 0.93558 1.00544 1.21128 0.97654 0.93280 1.03470 1.16873 0.79473 0.90628 1.03727 1.91529 1.39827 1.85746 1.93980 1.19719 0.88324 1.00231 1.07267 1.18332 0.86273 0.94105 1.06353 1.43214 1.04511 1.10551 1.63057 0.73572 1.25746 0.98122 0.80657 0.97985 1.70430 1.02663 1.25501 1.18815 1.18551 0.91526 0.89433 1.03756 1.24165 0.98141 0.90669 1.07562 1.78257 0.90062 1.15094 1.25694 0.91488 0.83659 0.77134 0.83442 0.84416 0.76245 0.80542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.83 11.81 55.50 0.66 -21.17 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 19.18 29.55 -169.99 -5.02 14.15 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.32 -8.65 10.25 -14.81 -0.15 -8.80 16 8 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 9 N -0.14 -4.00 3.74 -11.41 -0.04 -4.04 16 10 C -0.08 -2.00 11.49 -16.38 -0.19 -2.19 16 11 C -0.06 -1.37 6.90 -83.86 -0.58 -1.95 16 12 N -0.62 -11.62 5.41 -10.98 -0.06 -11.68 16 13 C 0.53 10.38 7.73 -12.54 -0.10 10.28 16 14 O -0.50 -11.68 13.20 5.25 0.07 -11.61 16 15 C -0.03 -0.45 5.90 -104.72 -0.62 -1.07 16 16 C -0.13 -1.58 9.50 -39.11 -0.37 -1.95 16 17 C 0.11 1.20 7.28 -39.47 -0.29 0.91 16 18 F -0.13 -1.37 17.25 2.25 0.04 -1.33 16 19 C -0.13 -1.23 10.03 -39.37 -0.39 -1.63 16 20 C 0.06 0.65 7.29 -84.00 -0.61 0.04 16 21 N -0.60 -4.33 6.24 -11.77 -0.07 -4.40 16 22 H 0.43 1.21 8.96 -40.82 -0.37 0.85 16 23 C 0.26 2.37 12.97 -89.76 -1.16 1.20 16 24 N -0.46 -6.94 10.50 -11.94 -0.13 -7.07 16 25 C 0.09 1.32 6.82 -84.65 -0.58 0.74 16 26 C -0.03 -0.81 10.85 -17.03 -0.18 -0.99 16 27 N -0.26 -7.74 10.39 30.80 0.32 -7.42 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 30 H 0.39 5.70 6.85 -40.82 -0.28 5.42 16 31 H 0.15 1.42 6.38 -52.49 -0.34 1.09 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.22 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.18 4.82 5.91 -52.49 -0.31 4.51 16 LS Contribution 310.35 15.07 4.68 4.68 Total: -1.00 -37.92 310.35 -6.99 -44.91 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -2.10 Total: 9.29 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -5.32 Total: -4.32 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.67 Total: -55.79 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -37.92 -6.99 -44.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139342996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.113 kcal (2) G-P(sol) polarization free energy of solvation -37.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds