Wall clock time and date at job start Tue Mar 31 2020 11:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31304 * 1 3 3 Si 1.86799 * 119.99825 * 2 1 4 4 H 1.48501 * 109.46817 * 269.99679 * 3 2 1 5 5 H 1.48504 * 109.47360 * 29.99546 * 3 2 1 6 6 H 1.48493 * 109.47069 * 149.99919 * 3 2 1 7 7 C 1.38986 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00057 * 180.02562 * 7 2 1 9 9 N 1.37324 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.36500 * 126.06602 * 180.28660 * 9 7 2 11 11 C 1.35696 * 107.50514 * 180.15880 * 10 9 7 12 12 N 1.40526 * 126.08413 * 179.83971 * 11 10 9 13 13 C 1.34773 * 119.99906 * 179.71712 * 12 11 10 14 14 O 1.21637 * 119.99894 * 359.97438 * 13 12 11 15 15 C 1.47385 * 120.00490 * 179.97438 * 13 12 11 16 16 C 1.39294 * 120.25766 * 0.02562 * 15 13 12 17 17 C 1.38447 * 120.32309 * 180.02562 * 16 15 13 18 18 F 1.35103 * 119.70209 * 180.02562 * 17 16 15 19 19 C 1.38335 * 120.59896 * 359.97438 * 17 16 15 20 20 C 1.38702 * 120.15305 * 359.97438 * 19 17 16 21 21 N 1.38165 * 133.97465 * 180.02562 * 20 19 17 22 22 H 0.96997 * 126.42726 * 359.97438 * 21 20 19 23 23 C 1.35914 * 107.14532 * 179.97438 * 21 20 19 24 24 N 1.30272 * 110.02105 * 0.02562 * 23 21 20 25 25 C 1.34813 * 109.79234 * 0.02562 * 24 23 21 26 26 C 1.40668 * 107.82619 * 359.58241 * 11 10 9 27 27 N 1.30898 * 108.39248 * 0.25842 * 26 11 10 28 28 H 0.96999 * 120.00295 * 0.02562 * 1 2 3 29 29 H 1.08000 * 126.24123 * 0.03003 * 10 9 7 30 30 H 0.96993 * 119.99724 * 359.71492 * 12 11 10 31 31 H 1.07992 * 119.84054 * 359.97438 * 16 15 13 32 32 H 1.07993 * 119.92264 * 179.72715 * 19 17 16 33 33 H 1.07996 * 124.99092 * 180.02562 * 23 21 20 34 34 H 1.08002 * 125.80068 * 180.28822 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4945 2.0463 -1.4001 5 1 1.4444 2.6528 0.7000 6 1 3.5445 1.4402 0.7000 7 6 2.0080 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3214 -2.3929 0.0016 10 6 1.8751 -3.6405 0.0077 11 6 0.8579 -4.5386 0.0030 12 7 0.9890 -5.9377 0.0035 13 6 -0.1102 -6.7175 0.0042 14 8 -1.2157 -6.2103 0.0048 15 6 0.0272 -8.1850 0.0042 16 6 1.2906 -8.7716 0.0040 17 6 1.4212 -10.1499 0.0035 18 9 2.6527 -10.7056 0.0039 19 6 0.3023 -10.9633 0.0036 20 6 -0.9665 -10.4029 0.0048 21 7 -2.2458 -10.9247 0.0057 22 1 -2.4843 -11.8649 0.0052 23 6 -3.1073 -9.8735 0.0073 24 7 -2.4433 -8.7527 0.0069 25 6 -1.1193 -9.0065 0.0045 26 6 -0.3512 -3.8197 0.0034 27 7 -0.0715 -2.5410 0.0027 28 1 -0.4850 0.8400 -0.0004 29 1 2.9303 -3.8707 0.0131 30 1 1.8706 -6.3421 0.0034 31 1 2.1725 -8.1484 0.0035 32 1 0.4169 -12.0371 -0.0013 33 1 -4.1841 -9.9554 0.0086 34 1 -1.3419 -4.2498 0.0047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139342996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:25 Heat of formation + Delta-G solvation = 64.518314 kcal Electronic energy + Delta-G solvation = -24398.123753 eV Core-core repulsion = 20440.772243 eV Total energy + Delta-G solvation = -3957.351509 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.92232 -43.24213 -41.68683 -40.22811 -37.80393 -35.93061 -34.96984 -34.24260 -32.30199 -31.54768 -30.15249 -29.43739 -26.91262 -25.37400 -23.56060 -23.23072 -22.81149 -21.81251 -21.22326 -19.68665 -19.25841 -18.62748 -18.09792 -17.41330 -17.03552 -16.95559 -16.88252 -16.13726 -16.12153 -15.82849 -15.78386 -15.25239 -15.04092 -15.00150 -14.76569 -14.25240 -13.99012 -13.47263 -13.27864 -12.96308 -12.90406 -12.81131 -12.48997 -12.07081 -11.88029 -11.74985 -11.14397 -10.99719 -10.81189 -10.59534 -10.08512 -9.64331 -9.24189 -8.49750 -8.45029 -6.22243 -0.67677 0.12288 1.27482 1.41078 1.59094 1.62115 1.76330 1.84441 1.90109 2.03699 2.26409 2.43327 2.84213 2.89257 3.11276 3.12774 3.27646 3.52172 3.83607 4.00841 4.12731 4.32284 4.36928 4.45826 4.60923 4.69962 4.83918 4.90687 5.01998 5.10427 5.28108 5.31973 5.46463 5.62061 5.97526 6.32871 6.46173 6.72102 6.75749 6.93949 7.38983 7.48550 7.69304 8.54508 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.026195 B = 0.002853 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.654492 B = 9811.897197 C =10870.708036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.008 4.008 3 Si 1.021 2.979 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.243 1.243 7 C -0.353 4.353 8 H 0.143 0.857 9 N -0.167 5.167 10 C -0.079 4.079 11 C -0.044 4.044 12 N -0.611 5.611 13 C 0.535 3.465 14 O -0.548 6.548 15 C -0.073 4.073 16 C -0.113 4.113 17 C 0.103 3.897 18 F -0.128 7.128 19 C -0.099 4.099 20 C 0.057 3.943 21 N -0.576 5.576 22 H 0.449 0.551 23 C 0.287 3.713 24 N -0.538 5.538 25 C 0.061 3.939 26 C -0.059 4.059 27 N -0.309 5.309 28 H 0.276 0.724 29 H 0.191 0.809 30 H 0.417 0.583 31 H 0.165 0.835 32 H 0.179 0.821 33 H 0.267 0.733 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 -25.740 0.038 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.220 4.220 3 Si 0.840 3.160 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.166 1.166 7 C -0.484 4.484 8 H 0.160 0.840 9 N 0.064 4.936 10 C -0.229 4.229 11 C -0.150 4.150 12 N -0.257 5.257 13 C 0.323 3.677 14 O -0.426 6.426 15 C -0.078 4.078 16 C -0.134 4.134 17 C 0.082 3.918 18 F -0.107 7.107 19 C -0.121 4.121 20 C -0.055 4.055 21 N -0.190 5.190 22 H 0.294 0.706 23 C 0.001 3.999 24 N -0.257 5.257 25 C -0.060 4.060 26 C -0.234 4.234 27 N -0.141 5.141 28 H 0.086 0.914 29 H 0.208 0.792 30 H 0.255 0.745 31 H 0.182 0.818 32 H 0.196 0.804 33 H 0.282 0.718 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.612 -23.249 0.041 23.257 hybrid contribution 0.964 -1.298 -0.015 1.617 sum 1.576 -24.547 0.026 24.598 Atomic orbital electron populations 1.70417 1.08493 1.29089 1.37324 1.26924 0.96481 1.04430 0.94135 0.84567 0.78283 0.73941 0.79227 1.18878 1.20264 1.16607 1.20651 0.93019 0.80821 1.53946 0.83988 1.44862 1.03602 1.04840 1.40330 1.21989 0.98773 0.84082 1.18060 1.17322 0.93008 0.83356 1.21327 1.42324 1.09379 1.02564 1.71440 1.18409 0.84068 0.87050 0.78184 1.90727 1.26935 1.75051 1.49881 1.18807 0.92192 0.90675 1.06112 1.21242 0.96746 0.94456 1.01001 1.16807 0.80108 0.90133 1.04795 1.91548 1.39565 1.85471 1.94070 1.20112 0.87013 1.02063 1.02878 1.18373 0.87941 0.92544 1.06618 1.43141 1.02879 1.11604 1.61371 0.70646 1.26579 0.99708 0.79639 0.93974 1.70373 1.03669 1.28975 1.22651 1.18882 0.91528 0.91476 1.04104 1.24139 0.99007 0.90970 1.09300 1.78147 0.92072 1.16377 1.27528 0.91422 0.79174 0.74494 0.81784 0.80378 0.71801 0.81887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.97 11.81 21.66 0.26 -48.71 16 2 C -0.01 -0.44 5.50 84.95 0.47 0.03 16 3 Si 1.02 39.42 29.55 68.60 2.03 41.45 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 5 H -0.28 -10.63 7.11 99.48 0.71 -9.93 16 6 H -0.24 -8.46 7.11 99.48 0.71 -7.76 16 7 C -0.35 -19.15 10.25 84.01 0.86 -18.29 16 8 H 0.14 6.62 7.83 -2.91 -0.02 6.60 16 9 N -0.17 -9.61 3.74 -190.00 -0.71 -10.32 16 10 C -0.08 -3.78 11.49 83.38 0.96 -2.82 16 11 C -0.04 -2.15 6.90 37.75 0.26 -1.89 16 12 N -0.61 -23.33 5.41 -306.90 -1.66 -24.99 16 13 C 0.53 21.70 7.73 86.65 0.67 22.37 16 14 O -0.55 -27.55 13.20 -4.15 -0.05 -27.60 16 15 C -0.07 -2.25 5.90 -19.93 -0.12 -2.37 16 16 C -0.11 -2.50 9.50 22.57 0.21 -2.28 16 17 C 0.10 1.85 7.28 22.34 0.16 2.01 16 18 F -0.13 -2.20 17.25 44.97 0.78 -1.42 16 19 C -0.10 -1.44 10.03 22.40 0.22 -1.21 16 20 C 0.06 1.07 7.29 38.80 0.28 1.35 16 21 N -0.58 -6.27 6.24 -191.16 -1.19 -7.47 16 22 H 0.45 0.45 8.96 -92.71 -0.83 -0.38 16 23 C 0.29 4.58 12.97 180.05 2.34 6.92 16 24 N -0.54 -16.47 10.50 -191.68 -2.01 -18.48 16 25 C 0.06 1.81 6.82 39.92 0.27 2.08 16 26 C -0.06 -3.43 10.85 85.43 0.93 -2.50 16 27 N -0.31 -19.48 10.39 -56.46 -0.59 -20.06 16 28 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.19 7.11 8.06 -2.91 -0.02 7.09 16 30 H 0.42 11.66 6.85 -92.71 -0.63 11.02 16 31 H 0.16 2.84 6.38 -2.91 -0.02 2.82 16 32 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 33 H 0.27 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.16 9.76 5.91 -2.91 -0.02 9.74 16 Total: -1.00 -91.56 310.35 4.11 -87.45 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.24 Total: 26.77 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 7.52 Total: 3.39 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -5.91 Total: -130.03 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.05 Total: -27.60 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.78 Total: -1.42 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -91.56 4.11 -87.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139342996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.965 kcal (2) G-P(sol) polarization free energy of solvation -91.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds