Wall clock time and date at job start Tue Mar 31 2020 11:29:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86804 * 120.00196 * 2 1
4 4 H 1.48500 * 109.47015 * 269.99850 * 3 2 1
5 5 H 1.48497 * 109.47108 * 29.99665 * 3 2 1
6 6 H 1.48496 * 109.47130 * 150.00236 * 3 2 1
7 7 C 1.37880 * 120.00014 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99735 * 359.97438 * 7 2 1
9 9 C 1.50697 * 119.99943 * 180.02562 * 7 2 1
10 10 C 1.53009 * 109.46948 * 179.97438 * 9 7 2
11 11 S 1.81397 * 109.47235 * 179.97438 * 10 9 7
12 12 O 1.42105 * 110.54275 * 68.37271 * 11 10 9
13 13 O 1.42101 * 110.54298 * 291.62373 * 11 10 9
14 14 N 1.65599 * 104.44825 * 179.97438 * 11 10 9
15 15 C 1.47149 * 120.98309 * 269.71349 * 14 11 10
16 16 C 1.53710 * 108.15947 * 129.43292 * 15 14 11
17 17 O 1.42967 * 109.14632 * 52.54035 * 16 15 14
18 18 C 1.42957 * 114.16780 * 297.28924 * 17 16 15
19 19 H 1.09007 * 109.51280 * 302.65504 * 18 17 16
20 20 C 1.50696 * 109.51174 * 182.50381 * 18 17 16
21 21 C 1.34525 * 125.78683 * 144.96897 * 20 18 17
22 22 C 1.41386 * 106.83474 * 179.88646 * 21 20 18
23 23 C 1.34511 * 106.84412 * 0.37261 * 22 21 20
24 24 O 1.34295 * 125.79122 * 325.27623 * 20 18 17
25 25 C 1.47149 * 120.98110 * 90.00425 * 14 11 10
26 26 H 0.97002 * 119.99563 * 359.97438 * 1 2 3
27 27 H 1.08995 * 109.47322 * 59.99852 * 9 7 2
28 28 H 1.09000 * 109.47116 * 299.99484 * 9 7 2
29 29 H 1.09004 * 109.47149 * 59.99839 * 10 9 7
30 30 H 1.09000 * 109.46805 * 299.99691 * 10 9 7
31 31 H 1.08995 * 109.68705 * 249.21168 * 15 14 11
32 32 H 1.08997 * 109.68056 * 9.77254 * 15 14 11
33 33 H 1.09000 * 109.66291 * 292.57906 * 16 15 14
34 34 H 1.09005 * 109.48745 * 172.40010 * 16 15 14
35 35 H 1.07992 * 126.57963 * 0.02894 * 21 20 18
36 36 H 1.08000 * 126.57540 * 180.16689 * 22 21 20
37 37 H 1.07997 * 125.78581 * 179.79060 * 23 22 21
38 38 H 1.09003 * 109.68295 * 350.23098 * 25 14 11
39 39 H 1.08992 * 109.68643 * 110.78588 * 25 14 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1293 -0.0005
9 6 3.5115 -1.1941 0.0000
10 6 4.0215 -2.6366 -0.0001
11 16 5.8355 -2.6367 -0.0001
12 8 6.3342 -2.1464 1.2369
13 8 6.3341 -2.1463 -1.2371
14 7 6.2486 -4.2403 0.0004
15 6 6.4437 -4.9719 1.2622
16 6 5.6109 -6.2624 1.2015
17 8 5.9307 -6.9708 0.0016
18 6 5.6104 -6.2634 -1.1987
19 1 4.5489 -6.0154 -1.2030
20 6 5.9316 -7.1257 -2.3921
21 6 5.2397 -7.1625 -3.5452
22 6 5.8881 -8.0996 -4.3821
23 6 6.9324 -8.5856 -3.6874
24 8 6.9538 -7.9921 -2.4827
25 6 6.4376 -4.9743 -1.2609
26 1 -0.4849 0.8401 0.0004
27 1 3.8745 -0.6808 0.8904
28 1 3.8752 -0.6797 -0.8895
29 1 3.6584 -3.1503 -0.8903
30 1 3.6578 -3.1506 0.8897
31 1 7.4985 -5.2177 1.3848
32 1 6.1099 -4.3573 2.0982
33 1 4.5495 -6.0145 1.2060
34 1 5.8428 -6.8858 2.0651
35 1 4.3595 -6.5851 -3.7862
36 1 5.5982 -8.3752 -5.3853
37 1 7.6346 -9.3269 -4.0388
38 1 6.0998 -4.3613 -2.0965
39 1 7.4917 -5.2204 -1.3880
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000150860095.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:29:52
Heat of formation + Delta-G solvation = -91.147418 kcal
Electronic energy + Delta-G solvation = -24704.397251 eV
Core-core repulsion = 20934.614323 eV
Total energy + Delta-G solvation = -3769.782928 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.102 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-42.76185 -39.50411 -36.91496 -35.72491 -34.98079 -34.01532 -33.41064 -32.50386
-31.54634 -29.28627 -26.88591 -26.03473 -24.57709 -22.31220 -21.80524 -21.10246
-20.50559 -18.91705 -18.09226 -17.54274 -17.03026 -16.81636 -16.20736 -15.95285
-15.73518 -15.42780 -15.24717 -14.80041 -14.35196 -14.14702 -13.85722 -13.65905
-12.99698 -12.89578 -12.86579 -12.63075 -12.22951 -12.08396 -11.97232 -11.88965
-11.83383 -11.57728 -11.31762 -11.28242 -10.87227 -10.67984 -10.49138 -10.17419
-10.11002 -9.73408 -9.46291 -9.05410 -8.70995 -8.61047 -6.21273 -4.23077
0.46841 1.47704 2.38476 2.63430 2.84671 3.23063 3.30738 3.34385
3.34534 4.06694 4.23657 4.31525 4.40650 4.49685 4.56055 4.75581
4.84952 4.94349 4.96315 5.06640 5.08526 5.10701 5.31022 5.40070
5.43987 5.55277 5.59247 5.67585 5.71548 5.80077 5.88955 6.18783
6.24672 6.31837 6.73412 6.73865 6.86736 6.99109 7.49027 8.31039
8.79235 9.38173 10.90974
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.017593 B = 0.003757 C = 0.003467
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1591.117919 B = 7450.388979 C = 8074.787666
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.073 3.927
3 Si 0.869 3.131
4 H -0.271 1.271
5 H -0.281 1.281
6 H -0.262 1.262
7 C -0.521 4.521
8 H 0.078 0.922
9 C -0.007 4.007
10 C -0.582 4.582
11 S 2.585 3.415
12 O -0.959 6.959
13 O -0.959 6.959
14 N -1.008 6.008
15 C 0.086 3.914
16 C 0.046 3.954
17 O -0.368 6.368
18 C 0.159 3.841
19 H 0.098 0.902
20 C -0.005 4.005
21 C -0.195 4.195
22 C -0.214 4.214
23 C -0.039 4.039
24 O -0.161 6.161
25 C 0.099 3.901
26 H 0.267 0.733
27 H 0.033 0.967
28 H 0.028 0.972
29 H 0.125 0.875
30 H 0.126 0.874
31 H 0.080 0.920
32 H 0.104 0.896
33 H 0.064 0.936
34 H 0.111 0.889
35 H 0.154 0.846
36 H 0.150 0.850
37 H 0.203 0.797
38 H 0.106 0.894
39 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.917 -17.048 -3.316 21.644
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.130 4.130
3 Si 0.695 3.305
4 H -0.196 1.196
5 H -0.207 1.207
6 H -0.186 1.186
7 C -0.560 4.560
8 H 0.096 0.904
9 C -0.046 4.046
10 C -0.715 4.715
11 S 2.684 3.316
12 O -0.949 6.949
13 O -0.949 6.949
14 N -0.845 5.845
15 C -0.039 4.039
16 C -0.032 4.032
17 O -0.286 6.286
18 C 0.099 3.901
19 H 0.116 0.884
20 C -0.056 4.056
21 C -0.214 4.214
22 C -0.233 4.233
23 C -0.107 4.107
24 O -0.056 6.056
25 C -0.027 4.027
26 H 0.077 0.923
27 H 0.051 0.949
28 H 0.047 0.953
29 H 0.143 0.857
30 H 0.144 0.856
31 H 0.098 0.902
32 H 0.122 0.878
33 H 0.082 0.918
34 H 0.129 0.871
35 H 0.171 0.829
36 H 0.168 0.832
37 H 0.220 0.780
38 H 0.124 0.876
39 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 13.721 -16.437 -3.064 21.630
hybrid contribution -0.522 0.688 -0.281 0.908
sum 13.199 -15.749 -3.344 20.819
Atomic orbital electron populations
1.69877 1.06210 1.27319 1.49796 1.24981 0.94820 0.99169 0.94071
0.86932 0.80693 0.83701 0.79173 1.19629 1.20699 1.18636 1.20822
0.87703 0.94922 1.52518 0.90400 1.19417 0.99984 0.87283 0.97912
1.30362 1.20972 1.09318 1.10881 1.05931 0.79261 0.72073 0.74300
1.93552 1.78861 1.77300 1.45193 1.93553 1.78838 1.77350 1.45205
1.58124 1.85477 1.29828 1.11020 1.22192 1.01775 0.94082 0.85901
1.23177 0.99019 0.93503 0.87517 1.88022 1.85161 1.42502 1.12949
1.20850 0.99294 0.88744 0.81164 0.88439 1.21858 0.90394 0.96312
0.97004 1.21629 1.02983 1.03102 0.93717 1.21834 0.98235 1.01297
1.01936 1.24115 1.01801 1.01108 0.83687 1.84078 1.43412 1.44282
1.33874 1.22022 1.01600 0.92697 0.86384 0.92320 0.94908 0.95346
0.85670 0.85567 0.90171 0.87783 0.91765 0.87148 0.82858 0.83204
0.78040 0.87574 0.89929
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16
2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16
3 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16
4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16
7 C -0.52 -14.17 9.66 -34.44 -0.33 -14.50 16
8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16
9 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16
10 C -0.58 -10.11 6.12 37.16 0.23 -9.88 16
11 S 2.59 42.77 5.42 -107.50 -0.58 42.18 16
12 O -0.96 -18.12 16.80 -57.54 -0.97 -19.09 16
13 O -0.96 -18.26 16.82 -57.54 -0.97 -19.23 16
14 N -1.01 -12.95 3.27 -112.83 -0.37 -13.32 16
15 C 0.09 0.91 6.53 -3.32 -0.02 0.89 16
16 C 0.05 0.42 7.00 37.53 0.26 0.69 16
17 O -0.37 -4.29 10.35 -40.05 -0.41 -4.70 16
18 C 0.16 1.78 3.24 -27.73 -0.09 1.69 16
19 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16
20 C 0.00 -0.05 6.22 -35.62 -0.22 -0.27 16
21 C -0.19 -2.03 10.81 -39.70 -0.43 -2.46 16
22 C -0.21 -1.95 10.91 -39.70 -0.43 -2.39 16
23 C -0.04 -0.34 12.09 29.41 0.36 0.01 16
24 O -0.16 -1.90 10.63 0.90 0.01 -1.89 16
25 C 0.10 1.18 5.77 -3.54 -0.02 1.16 16
26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16
27 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16
28 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16
29 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16
30 H 0.13 1.95 8.14 -51.92 -0.42 1.53 16
31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
32 H 0.10 1.05 7.22 -51.93 -0.37 0.67 16
33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16
35 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16
36 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16
37 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16
38 H 0.11 1.23 7.23 -51.93 -0.38 0.85 16
39 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16
LS Contribution 339.99 15.07 5.12 5.12
Total: -1.00 -35.39 339.99 -8.31 -43.69
By element:
Atomic # 1 Polarization: 5.31 SS G_CDS: -5.33 Total: -0.03 kcal
Atomic # 6 Polarization: -22.47 SS G_CDS: -0.91 Total: -23.39 kcal
Atomic # 7 Polarization: -39.53 SS G_CDS: 0.41 Total: -39.13 kcal
Atomic # 8 Polarization: -42.57 SS G_CDS: -2.34 Total: -44.91 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal
Atomic # 16 Polarization: 42.77 SS G_CDS: -0.58 Total: 42.18 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -35.39 -8.31 -43.69 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000150860095.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.456 kcal
(2) G-P(sol) polarization free energy of solvation -35.386 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.841 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.147 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds