Wall clock time and date at job start Tue Mar 31 2020 11:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47015 * 269.99850 * 3 2 1 5 5 H 1.48497 * 109.47108 * 29.99665 * 3 2 1 6 6 H 1.48496 * 109.47130 * 150.00236 * 3 2 1 7 7 C 1.37880 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99735 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99943 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46948 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47235 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54275 * 68.37271 * 11 10 9 13 13 O 1.42101 * 110.54298 * 291.62373 * 11 10 9 14 14 N 1.65599 * 104.44825 * 179.97438 * 11 10 9 15 15 C 1.47149 * 120.98309 * 269.71349 * 14 11 10 16 16 C 1.53710 * 108.15947 * 129.43292 * 15 14 11 17 17 O 1.42967 * 109.14632 * 52.54035 * 16 15 14 18 18 C 1.42957 * 114.16780 * 297.28924 * 17 16 15 19 19 H 1.09007 * 109.51280 * 302.65504 * 18 17 16 20 20 C 1.50696 * 109.51174 * 182.50381 * 18 17 16 21 21 C 1.34525 * 125.78683 * 144.96897 * 20 18 17 22 22 C 1.41386 * 106.83474 * 179.88646 * 21 20 18 23 23 C 1.34511 * 106.84412 * 0.37261 * 22 21 20 24 24 O 1.34295 * 125.79122 * 325.27623 * 20 18 17 25 25 C 1.47149 * 120.98110 * 90.00425 * 14 11 10 26 26 H 0.97002 * 119.99563 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47322 * 59.99852 * 9 7 2 28 28 H 1.09000 * 109.47116 * 299.99484 * 9 7 2 29 29 H 1.09004 * 109.47149 * 59.99839 * 10 9 7 30 30 H 1.09000 * 109.46805 * 299.99691 * 10 9 7 31 31 H 1.08995 * 109.68705 * 249.21168 * 15 14 11 32 32 H 1.08997 * 109.68056 * 9.77254 * 15 14 11 33 33 H 1.09000 * 109.66291 * 292.57906 * 16 15 14 34 34 H 1.09005 * 109.48745 * 172.40010 * 16 15 14 35 35 H 1.07992 * 126.57963 * 0.02894 * 21 20 18 36 36 H 1.08000 * 126.57540 * 180.16689 * 22 21 20 37 37 H 1.07997 * 125.78581 * 179.79060 * 23 22 21 38 38 H 1.09003 * 109.68295 * 350.23098 * 25 14 11 39 39 H 1.08992 * 109.68643 * 110.78588 * 25 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 16 5.8355 -2.6367 -0.0001 12 8 6.3342 -2.1464 1.2369 13 8 6.3341 -2.1463 -1.2371 14 7 6.2486 -4.2403 0.0004 15 6 6.4437 -4.9719 1.2622 16 6 5.6109 -6.2624 1.2015 17 8 5.9307 -6.9708 0.0016 18 6 5.6104 -6.2634 -1.1987 19 1 4.5489 -6.0154 -1.2030 20 6 5.9316 -7.1257 -2.3921 21 6 5.2397 -7.1625 -3.5452 22 6 5.8881 -8.0996 -4.3821 23 6 6.9324 -8.5856 -3.6874 24 8 6.9538 -7.9921 -2.4827 25 6 6.4376 -4.9743 -1.2609 26 1 -0.4849 0.8401 0.0004 27 1 3.8745 -0.6808 0.8904 28 1 3.8752 -0.6797 -0.8895 29 1 3.6584 -3.1503 -0.8903 30 1 3.6578 -3.1506 0.8897 31 1 7.4985 -5.2177 1.3848 32 1 6.1099 -4.3573 2.0982 33 1 4.5495 -6.0145 1.2060 34 1 5.8428 -6.8858 2.0651 35 1 4.3595 -6.5851 -3.7862 36 1 5.5982 -8.3752 -5.3853 37 1 7.6346 -9.3269 -4.0388 38 1 6.0998 -4.3613 -2.0965 39 1 7.4917 -5.2204 -1.3880 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150860095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:52 Heat of formation + Delta-G solvation = -91.147418 kcal Electronic energy + Delta-G solvation = -24704.397251 eV Core-core repulsion = 20934.614323 eV Total energy + Delta-G solvation = -3769.782928 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.76185 -39.50411 -36.91496 -35.72491 -34.98079 -34.01532 -33.41064 -32.50386 -31.54634 -29.28627 -26.88591 -26.03473 -24.57709 -22.31220 -21.80524 -21.10246 -20.50559 -18.91705 -18.09226 -17.54274 -17.03026 -16.81636 -16.20736 -15.95285 -15.73518 -15.42780 -15.24717 -14.80041 -14.35196 -14.14702 -13.85722 -13.65905 -12.99698 -12.89578 -12.86579 -12.63075 -12.22951 -12.08396 -11.97232 -11.88965 -11.83383 -11.57728 -11.31762 -11.28242 -10.87227 -10.67984 -10.49138 -10.17419 -10.11002 -9.73408 -9.46291 -9.05410 -8.70995 -8.61047 -6.21273 -4.23077 0.46841 1.47704 2.38476 2.63430 2.84671 3.23063 3.30738 3.34385 3.34534 4.06694 4.23657 4.31525 4.40650 4.49685 4.56055 4.75581 4.84952 4.94349 4.96315 5.06640 5.08526 5.10701 5.31022 5.40070 5.43987 5.55277 5.59247 5.67585 5.71548 5.80077 5.88955 6.18783 6.24672 6.31837 6.73412 6.73865 6.86736 6.99109 7.49027 8.31039 8.79235 9.38173 10.90974 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.003757 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.117919 B = 7450.388979 C = 8074.787666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.521 4.521 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.582 4.582 11 S 2.585 3.415 12 O -0.959 6.959 13 O -0.959 6.959 14 N -1.008 6.008 15 C 0.086 3.914 16 C 0.046 3.954 17 O -0.368 6.368 18 C 0.159 3.841 19 H 0.098 0.902 20 C -0.005 4.005 21 C -0.195 4.195 22 C -0.214 4.214 23 C -0.039 4.039 24 O -0.161 6.161 25 C 0.099 3.901 26 H 0.267 0.733 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.203 0.797 38 H 0.106 0.894 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.917 -17.048 -3.316 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.096 0.904 9 C -0.046 4.046 10 C -0.715 4.715 11 S 2.684 3.316 12 O -0.949 6.949 13 O -0.949 6.949 14 N -0.845 5.845 15 C -0.039 4.039 16 C -0.032 4.032 17 O -0.286 6.286 18 C 0.099 3.901 19 H 0.116 0.884 20 C -0.056 4.056 21 C -0.214 4.214 22 C -0.233 4.233 23 C -0.107 4.107 24 O -0.056 6.056 25 C -0.027 4.027 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.220 0.780 38 H 0.124 0.876 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.721 -16.437 -3.064 21.630 hybrid contribution -0.522 0.688 -0.281 0.908 sum 13.199 -15.749 -3.344 20.819 Atomic orbital electron populations 1.69877 1.06210 1.27319 1.49796 1.24981 0.94820 0.99169 0.94071 0.86932 0.80693 0.83701 0.79173 1.19629 1.20699 1.18636 1.20822 0.87703 0.94922 1.52518 0.90400 1.19417 0.99984 0.87283 0.97912 1.30362 1.20972 1.09318 1.10881 1.05931 0.79261 0.72073 0.74300 1.93552 1.78861 1.77300 1.45193 1.93553 1.78838 1.77350 1.45205 1.58124 1.85477 1.29828 1.11020 1.22192 1.01775 0.94082 0.85901 1.23177 0.99019 0.93503 0.87517 1.88022 1.85161 1.42502 1.12949 1.20850 0.99294 0.88744 0.81164 0.88439 1.21858 0.90394 0.96312 0.97004 1.21629 1.02983 1.03102 0.93717 1.21834 0.98235 1.01297 1.01936 1.24115 1.01801 1.01108 0.83687 1.84078 1.43412 1.44282 1.33874 1.22022 1.01600 0.92697 0.86384 0.92320 0.94908 0.95346 0.85670 0.85567 0.90171 0.87783 0.91765 0.87148 0.82858 0.83204 0.78040 0.87574 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -14.17 9.66 -34.44 -0.33 -14.50 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 10 C -0.58 -10.11 6.12 37.16 0.23 -9.88 16 11 S 2.59 42.77 5.42 -107.50 -0.58 42.18 16 12 O -0.96 -18.12 16.80 -57.54 -0.97 -19.09 16 13 O -0.96 -18.26 16.82 -57.54 -0.97 -19.23 16 14 N -1.01 -12.95 3.27 -112.83 -0.37 -13.32 16 15 C 0.09 0.91 6.53 -3.32 -0.02 0.89 16 16 C 0.05 0.42 7.00 37.53 0.26 0.69 16 17 O -0.37 -4.29 10.35 -40.05 -0.41 -4.70 16 18 C 0.16 1.78 3.24 -27.73 -0.09 1.69 16 19 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 20 C 0.00 -0.05 6.22 -35.62 -0.22 -0.27 16 21 C -0.19 -2.03 10.81 -39.70 -0.43 -2.46 16 22 C -0.21 -1.95 10.91 -39.70 -0.43 -2.39 16 23 C -0.04 -0.34 12.09 29.41 0.36 0.01 16 24 O -0.16 -1.90 10.63 0.90 0.01 -1.89 16 25 C 0.10 1.18 5.77 -3.54 -0.02 1.16 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 28 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 29 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 30 H 0.13 1.95 8.14 -51.92 -0.42 1.53 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 1.05 7.22 -51.93 -0.37 0.67 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.11 1.23 7.23 -51.93 -0.38 0.85 16 39 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -35.39 339.99 -8.31 -43.69 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.33 Total: -0.03 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -0.91 Total: -23.39 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.41 Total: -39.13 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -2.34 Total: -44.91 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 42.77 SS G_CDS: -0.58 Total: 42.18 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.39 -8.31 -43.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150860095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.456 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds