Wall clock time and date at job start Tue Mar 31 2020 11:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47015 * 269.99850 * 3 2 1 5 5 H 1.48497 * 109.47108 * 29.99665 * 3 2 1 6 6 H 1.48496 * 109.47130 * 150.00236 * 3 2 1 7 7 C 1.37880 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99735 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99943 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46948 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47235 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54275 * 68.37271 * 11 10 9 13 13 O 1.42101 * 110.54298 * 291.62373 * 11 10 9 14 14 N 1.65599 * 104.44825 * 179.97438 * 11 10 9 15 15 C 1.47149 * 120.98309 * 269.71349 * 14 11 10 16 16 C 1.53710 * 108.15947 * 129.43292 * 15 14 11 17 17 O 1.42967 * 109.14632 * 52.54035 * 16 15 14 18 18 C 1.42957 * 114.16780 * 297.28924 * 17 16 15 19 19 H 1.09007 * 109.51280 * 302.65504 * 18 17 16 20 20 C 1.50696 * 109.51174 * 182.50381 * 18 17 16 21 21 C 1.34525 * 125.78683 * 144.96897 * 20 18 17 22 22 C 1.41386 * 106.83474 * 179.88646 * 21 20 18 23 23 C 1.34511 * 106.84412 * 0.37261 * 22 21 20 24 24 O 1.34295 * 125.79122 * 325.27623 * 20 18 17 25 25 C 1.47149 * 120.98110 * 90.00425 * 14 11 10 26 26 H 0.97002 * 119.99563 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47322 * 59.99852 * 9 7 2 28 28 H 1.09000 * 109.47116 * 299.99484 * 9 7 2 29 29 H 1.09004 * 109.47149 * 59.99839 * 10 9 7 30 30 H 1.09000 * 109.46805 * 299.99691 * 10 9 7 31 31 H 1.08995 * 109.68705 * 249.21168 * 15 14 11 32 32 H 1.08997 * 109.68056 * 9.77254 * 15 14 11 33 33 H 1.09000 * 109.66291 * 292.57906 * 16 15 14 34 34 H 1.09005 * 109.48745 * 172.40010 * 16 15 14 35 35 H 1.07992 * 126.57963 * 0.02894 * 21 20 18 36 36 H 1.08000 * 126.57540 * 180.16689 * 22 21 20 37 37 H 1.07997 * 125.78581 * 179.79060 * 23 22 21 38 38 H 1.09003 * 109.68295 * 350.23098 * 25 14 11 39 39 H 1.08992 * 109.68643 * 110.78588 * 25 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 16 5.8355 -2.6367 -0.0001 12 8 6.3342 -2.1464 1.2369 13 8 6.3341 -2.1463 -1.2371 14 7 6.2486 -4.2403 0.0004 15 6 6.4437 -4.9719 1.2622 16 6 5.6109 -6.2624 1.2015 17 8 5.9307 -6.9708 0.0016 18 6 5.6104 -6.2634 -1.1987 19 1 4.5489 -6.0154 -1.2030 20 6 5.9316 -7.1257 -2.3921 21 6 5.2397 -7.1625 -3.5452 22 6 5.8881 -8.0996 -4.3821 23 6 6.9324 -8.5856 -3.6874 24 8 6.9538 -7.9921 -2.4827 25 6 6.4376 -4.9743 -1.2609 26 1 -0.4849 0.8401 0.0004 27 1 3.8745 -0.6808 0.8904 28 1 3.8752 -0.6797 -0.8895 29 1 3.6584 -3.1503 -0.8903 30 1 3.6578 -3.1506 0.8897 31 1 7.4985 -5.2177 1.3848 32 1 6.1099 -4.3573 2.0982 33 1 4.5495 -6.0145 1.2060 34 1 5.8428 -6.8858 2.0651 35 1 4.3595 -6.5851 -3.7862 36 1 5.5982 -8.3752 -5.3853 37 1 7.6346 -9.3269 -4.0388 38 1 6.0998 -4.3613 -2.0965 39 1 7.4917 -5.2204 -1.3880 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150860095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:52 Heat of formation + Delta-G solvation = -117.293681 kcal Electronic energy + Delta-G solvation = -24705.531038 eV Core-core repulsion = 20934.614323 eV Total energy + Delta-G solvation = -3770.916715 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.50618 -40.35670 -38.32934 -37.13534 -35.98575 -35.86837 -34.18702 -33.48386 -33.27011 -30.06488 -27.98106 -27.68449 -25.40103 -23.48992 -22.76202 -22.39532 -21.30004 -20.09239 -19.48395 -18.80411 -18.31913 -17.76536 -17.18528 -17.11831 -16.89560 -16.45748 -16.19112 -16.05872 -15.91034 -15.25826 -15.16545 -14.81897 -14.51959 -13.82209 -13.72580 -13.69372 -13.46984 -13.33567 -13.30573 -13.08977 -13.03841 -12.98331 -12.88025 -12.62978 -12.26056 -12.02369 -11.79323 -11.66098 -11.58967 -11.06499 -10.85067 -10.84373 -10.03514 -9.38854 -8.36445 -6.42107 -0.86145 0.72075 1.32072 1.34444 1.43723 1.50159 1.69869 2.08865 2.29418 2.58209 2.73410 2.97715 3.04032 3.44654 3.64902 3.75126 3.89057 4.01421 4.02203 4.12109 4.16412 4.20503 4.31014 4.35263 4.54968 4.63076 4.67589 4.86533 4.90876 4.93524 5.02738 5.05094 5.09202 5.16362 5.35377 5.46921 5.58162 5.97272 6.16495 6.24722 6.64177 7.22451 8.78904 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.003757 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.117919 B = 7450.388979 C = 8074.787666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.015 3.985 3 Si 0.923 3.077 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.525 4.525 8 H 0.052 0.948 9 C -0.017 4.017 10 C -0.585 4.585 11 S 2.613 3.387 12 O -0.981 6.981 13 O -0.985 6.985 14 N -1.000 6.000 15 C 0.078 3.922 16 C 0.044 3.956 17 O -0.382 6.382 18 C 0.161 3.839 19 H 0.107 0.893 20 C -0.030 4.030 21 C -0.202 4.202 22 C -0.227 4.227 23 C -0.036 4.036 24 O -0.182 6.182 25 C 0.097 3.903 26 H 0.270 0.730 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.162 0.838 36 H 0.171 0.829 37 H 0.239 0.761 38 H 0.107 0.893 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.372 -17.996 -3.516 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.184 4.184 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.173 1.173 7 C -0.564 4.564 8 H 0.070 0.930 9 C -0.056 4.056 10 C -0.717 4.717 11 S 2.711 3.289 12 O -0.972 6.972 13 O -0.975 6.975 14 N -0.839 5.839 15 C -0.047 4.047 16 C -0.033 4.033 17 O -0.300 6.300 18 C 0.102 3.898 19 H 0.125 0.875 20 C -0.080 4.080 21 C -0.221 4.221 22 C -0.246 4.246 23 C -0.103 4.103 24 O -0.078 6.078 25 C -0.029 4.029 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.160 0.840 30 H 0.162 0.838 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.180 0.820 36 H 0.189 0.811 37 H 0.255 0.745 38 H 0.125 0.875 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.173 -17.383 -3.260 23.303 hybrid contribution -0.960 0.818 -0.246 1.285 sum 14.213 -16.565 -3.506 22.106 Atomic orbital electron populations 1.70002 1.07863 1.28362 1.51652 1.25845 0.95592 1.02921 0.94033 0.86061 0.79963 0.79594 0.79846 1.18613 1.20013 1.17278 1.21151 0.90118 0.93893 1.51279 0.93017 1.19379 0.97290 0.91055 0.97901 1.30338 1.22431 1.06205 1.12755 1.04891 0.78239 0.72673 0.73094 1.93517 1.78986 1.78542 1.46135 1.93515 1.79004 1.78679 1.46308 1.57785 1.84852 1.28754 1.12469 1.22480 1.02807 0.94540 0.84846 1.23368 0.99204 0.93119 0.87612 1.88013 1.85351 1.43102 1.13575 1.20838 0.99532 0.88190 0.81259 0.87509 1.21976 0.91177 0.97328 0.97564 1.21939 1.03197 1.03257 0.93740 1.22182 0.98348 1.01143 1.02908 1.24902 1.02085 1.00789 0.82551 1.84061 1.43737 1.44739 1.35256 1.22142 1.01954 0.93031 0.85774 0.92136 0.94904 0.95124 0.84027 0.83777 0.89292 0.87139 0.91018 0.84551 0.81990 0.81109 0.74520 0.87512 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.77 13.96 21.45 0.30 -56.47 16 2 C 0.01 0.84 5.47 84.66 0.46 1.30 16 3 Si 0.92 43.03 27.47 68.60 1.88 44.91 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 7 C -0.53 -28.80 9.66 25.60 0.25 -28.55 16 8 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 9 C -0.02 -0.77 4.05 29.85 0.12 -0.65 16 10 C -0.59 -19.62 6.12 71.99 0.44 -19.18 16 11 S 2.61 82.95 5.42 -56.49 -0.31 82.65 16 12 O -0.98 -35.75 16.80 -127.65 -2.14 -37.89 16 13 O -0.98 -36.47 16.82 -127.65 -2.15 -38.62 16 14 N -1.00 -24.10 3.27 -510.89 -1.67 -25.77 16 15 C 0.08 1.49 6.53 86.49 0.56 2.06 16 16 C 0.04 0.72 7.00 72.22 0.51 1.23 16 17 O -0.38 -8.25 10.35 -144.37 -1.49 -9.75 16 18 C 0.16 3.40 3.24 29.95 0.10 3.50 16 19 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 20 C -0.03 -0.66 6.22 24.83 0.15 -0.50 16 21 C -0.20 -3.99 10.81 22.19 0.24 -3.75 16 22 C -0.23 -3.73 10.91 22.19 0.24 -3.49 16 23 C -0.04 -0.56 12.09 66.97 0.81 0.25 16 24 O -0.18 -4.05 10.63 2.15 0.02 -4.03 16 25 C 0.10 2.18 5.77 86.35 0.50 2.68 16 26 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 27 H 0.03 1.47 7.20 -2.39 -0.02 1.46 16 28 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 29 H 0.14 4.22 8.14 -2.39 -0.02 4.20 16 30 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.11 1.99 7.22 -2.39 -0.02 1.97 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.14 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.24 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.11 2.38 7.23 -2.39 -0.02 2.36 16 39 H 0.08 1.87 8.13 -2.39 -0.02 1.85 16 Total: -1.00 -75.94 339.99 -0.18 -76.11 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.99 Total: 13.96 kcal Atomic # 6 Polarization: -49.49 SS G_CDS: 4.38 Total: -45.11 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -1.37 Total: -82.24 kcal Atomic # 8 Polarization: -84.52 SS G_CDS: -5.76 Total: -90.28 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.91 kcal Atomic # 16 Polarization: 82.95 SS G_CDS: -0.31 Total: 82.65 kcal Total: -75.94 -0.18 -76.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150860095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.182 kcal (2) G-P(sol) polarization free energy of solvation -75.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds