Wall clock time and date at job start Tue Mar 31 2020 10:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.46722 * 2 1 4 4 C 1.46499 * 119.99910 * 269.99805 * 3 2 1 5 5 C 1.50706 * 109.47422 * 270.00269 * 4 3 2 6 6 H 1.08000 * 119.99610 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00278 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00091 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99881 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47547 * 90.00139 * 9 7 5 11 11 H 1.48506 * 109.47018 * 209.99992 * 9 7 5 12 12 H 1.48503 * 109.47204 * 329.99859 * 9 7 5 13 13 C 1.34773 * 120.00443 * 90.00277 * 3 2 1 14 14 O 1.21281 * 120.00900 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99749 * 359.97438 * 13 3 2 16 16 O 1.42900 * 109.47360 * 179.97438 * 15 13 3 17 17 C 1.35976 * 117.00064 * 180.02562 * 16 15 13 18 18 C 1.38905 * 120.06996 * 90.00499 * 17 16 15 19 19 F 1.35102 * 120.03839 * 359.69827 * 18 17 16 20 20 C 1.38315 * 119.92227 * 179.72514 * 18 17 16 21 21 C 1.38294 * 120.04655 * 359.97438 * 20 18 17 22 22 C 1.38212 * 120.13508 * 0.02562 * 21 20 18 23 23 C 1.38309 * 120.08554 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 120.03009 * 180.02562 * 23 22 21 25 25 H 1.09004 * 109.47033 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47391 * 299.99380 * 1 2 3 27 27 H 1.08998 * 109.47762 * 60.00042 * 1 2 3 28 28 H 1.08999 * 109.46926 * 240.00010 * 2 1 3 29 29 H 1.09004 * 109.47342 * 119.99809 * 2 1 3 30 30 H 1.08999 * 109.47563 * 30.00470 * 4 3 2 31 31 H 1.09003 * 109.47285 * 150.00148 * 4 3 2 32 32 H 0.97003 * 120.00014 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47146 * 60.00719 * 15 13 3 34 34 H 1.08998 * 109.47072 * 300.00600 * 15 13 3 35 35 H 1.07993 * 119.98076 * 179.97438 * 20 18 17 36 36 H 1.08003 * 119.93106 * 180.02562 * 21 20 18 37 37 H 1.08008 * 119.95857 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3896 -2.8780 8 7 5.3909 2.1826 -3.2579 9 14 3.0126 3.4351 -3.9293 10 1 3.1160 4.8554 -3.5083 11 1 3.4055 3.3119 -5.3561 12 1 1.6128 2.9691 -3.7593 13 6 2.2429 2.0166 1.1671 14 8 2.6475 3.1599 1.1672 15 6 1.9913 1.3064 2.4723 16 8 2.3015 2.1816 3.5584 17 6 2.1285 1.6916 4.8150 18 6 3.1731 1.0397 5.4577 19 9 4.3611 0.8862 4.8329 20 6 2.9956 0.5474 6.7380 21 6 1.7796 0.7044 7.3778 22 6 0.7387 1.3526 6.7403 23 6 0.9102 1.8471 5.4600 24 17 -0.3981 2.6617 4.6608 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5816 1.6877 -2.0284 31 1 2.0953 3.1410 -1.1384 32 1 5.7169 2.5731 -4.0839 33 1 2.6213 0.4187 2.5303 34 1 0.9432 1.0125 2.5298 35 1 3.8070 0.0401 7.2385 36 1 1.6431 0.3196 8.3777 37 1 -0.2099 1.4733 7.2424 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159174174.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:34 Heat of formation + Delta-G solvation = -111.084413 kcal Electronic energy + Delta-G solvation = -23940.231650 eV Core-core repulsion = 20044.080177 eV Total energy + Delta-G solvation = -3896.151472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.07860 -41.34808 -40.46494 -38.49285 -37.53886 -37.07613 -34.90737 -32.16663 -31.63309 -31.44384 -30.23542 -28.41166 -24.58406 -24.23929 -24.05741 -23.53575 -20.27706 -19.60294 -19.15622 -18.55175 -18.25885 -17.99268 -17.33429 -16.84438 -16.73423 -16.28935 -16.07098 -15.70274 -15.53024 -15.01508 -14.79351 -14.59356 -14.52972 -14.22188 -13.88105 -13.80202 -13.45065 -13.21924 -13.12854 -12.89322 -12.58956 -12.45540 -12.38680 -12.13907 -12.07317 -11.99859 -11.76882 -11.24321 -10.85826 -10.78589 -9.89468 -9.85386 -9.54389 -8.36368 -6.42195 -0.28551 -0.13709 0.93413 1.30329 1.35753 1.43461 1.55811 1.70072 2.27774 2.29102 2.67639 2.97735 3.08699 3.46741 3.72275 3.75724 3.80005 4.00900 4.10123 4.10920 4.18042 4.34314 4.55841 4.59126 4.73812 4.83879 4.87393 4.93553 4.96398 5.01932 5.12921 5.34125 5.42571 5.47647 5.55732 6.08156 6.21000 6.53809 6.59126 7.14898 7.27984 8.80752 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.003663 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.510460 B = 7642.377297 C = 8213.247839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.227 3.773 5 C -0.540 4.540 6 H 0.027 0.973 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.235 1.235 13 C 0.501 3.499 14 O -0.578 6.578 15 C 0.064 3.936 16 O -0.326 6.326 17 C 0.037 3.963 18 C 0.068 3.932 19 F -0.144 7.144 20 C -0.128 4.128 21 C -0.061 4.061 22 C -0.098 4.098 23 C -0.041 4.041 24 Cl -0.053 7.053 25 H 0.099 0.901 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.269 0.731 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.174 0.826 36 H 0.195 0.805 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.722 -9.361 23.558 29.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.105 3.895 5 C -0.579 4.579 6 H 0.046 0.954 7 C -0.187 4.187 8 N -0.584 5.584 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.197 1.197 12 H -0.158 1.158 13 C 0.289 3.711 14 O -0.457 6.457 15 C -0.013 4.013 16 O -0.243 6.243 17 C -0.008 4.008 18 C 0.048 3.952 19 F -0.123 7.123 20 C -0.146 4.146 21 C -0.079 4.079 22 C -0.117 4.117 23 C -0.069 4.069 24 Cl -0.024 7.024 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.191 0.809 36 H 0.212 0.788 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -15.406 -8.508 23.237 29.150 hybrid contribution 0.650 0.686 -1.335 1.636 sum -14.756 -7.822 21.902 27.543 Atomic orbital electron populations 1.22182 0.93510 1.04035 1.02240 1.21893 0.96012 0.80706 1.04309 1.47973 1.64035 1.15374 1.05217 1.19354 0.95081 0.93014 0.82012 1.21555 0.97058 1.32437 1.06814 0.95423 1.25861 0.96785 0.97086 0.98919 1.70051 1.17439 1.46447 1.24498 0.85714 0.80546 0.78878 0.77816 1.20388 1.19690 1.15816 1.20613 0.77870 0.86643 0.85986 1.90669 1.46805 1.20475 1.87779 1.22546 1.03251 0.92114 0.83428 1.86199 1.87610 1.39191 1.11250 1.18825 0.93235 1.01881 0.86876 1.18428 0.81220 1.01388 0.94165 1.91519 1.44022 1.93774 1.82979 1.21651 1.01408 1.00393 0.91177 1.21578 0.89596 0.95185 1.01553 1.21546 1.02513 0.96748 0.90863 1.21408 0.88239 1.01015 0.96224 1.98404 1.46191 1.77524 1.80305 0.88193 0.92363 0.92934 0.89979 0.89029 0.92503 0.96465 0.92179 0.88644 0.86959 0.80873 0.78825 0.80623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 10.24 71.98 0.74 -2.83 16 2 C 0.09 2.75 5.93 86.38 0.51 3.26 16 3 N -0.59 -25.20 2.46 -826.15 -2.03 -27.22 16 4 C 0.23 11.44 4.23 85.63 0.36 11.80 16 5 C -0.54 -32.82 9.94 25.60 0.25 -32.56 16 6 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 7 C 0.01 0.70 5.47 84.65 0.46 1.17 16 8 N -0.94 -61.08 13.96 21.45 0.30 -60.78 16 9 Si 0.95 45.44 27.47 68.60 1.88 47.32 16 10 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 13 C 0.50 22.45 7.75 87.66 0.68 23.13 16 14 O -0.58 -32.47 16.08 16.00 0.26 -32.22 16 15 C 0.06 2.11 5.09 71.24 0.36 2.47 16 16 O -0.33 -11.93 8.91 -74.24 -0.66 -12.59 16 17 C 0.04 1.03 5.72 22.55 0.13 1.15 16 18 C 0.07 1.64 7.31 22.45 0.16 1.81 16 19 F -0.14 -4.42 17.11 44.97 0.77 -3.65 16 20 C -0.13 -1.72 10.02 22.30 0.22 -1.49 16 21 C -0.06 -0.48 10.04 22.28 0.22 -0.25 16 22 C -0.10 -1.13 9.82 22.28 0.22 -0.91 16 23 C -0.04 -0.87 6.33 22.40 0.14 -0.73 16 24 Cl -0.05 -1.22 28.50 -2.72 -0.08 -1.29 16 25 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.06 1.22 7.22 -2.39 -0.02 1.20 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 28 H 0.08 2.56 8.07 -2.39 -0.02 2.54 16 29 H 0.09 2.23 6.44 -2.39 -0.02 2.21 16 30 H 0.06 2.58 7.13 -2.39 -0.02 2.56 16 31 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 32 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 33 H 0.10 2.82 7.40 -2.38 -0.02 2.80 16 34 H 0.11 2.92 7.18 -2.39 -0.02 2.90 16 35 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 36 H 0.19 -0.25 8.06 -2.91 -0.02 -0.28 16 37 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -87.12 340.26 5.96 -81.17 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.04 Total: 3.24 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 4.47 Total: 6.02 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -1.73 Total: -88.00 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -0.40 Total: -44.80 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.77 Total: -3.65 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.32 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.29 kcal Total: -87.12 5.96 -81.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159174174.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.918 kcal (2) G-P(sol) polarization free energy of solvation -87.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds