Wall clock time and date at job start Tue Mar 31 2020 11:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99887 * 2 1 4 4 H 1.48496 * 109.46863 * 269.99972 * 3 2 1 5 5 H 1.48500 * 109.47027 * 29.99864 * 3 2 1 6 6 H 1.48499 * 109.47163 * 149.99929 * 3 2 1 7 7 C 1.37875 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99794 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47145 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47225 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00255 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99826 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00035 * 179.97438 * 13 12 11 16 16 S 1.81400 * 109.46935 * 180.02562 * 15 13 12 17 17 C 1.76204 * 102.99919 * 180.02562 * 16 15 13 18 18 C 1.38960 * 120.04139 * 0.02562 * 17 16 15 19 19 C 1.38113 * 119.98359 * 179.97438 * 18 17 16 20 20 C 1.38434 * 120.08051 * 359.97438 * 19 18 17 21 21 F 1.35103 * 119.95471 * 180.27750 * 20 19 18 22 22 C 1.38675 * 120.09103 * 0.02562 * 20 19 18 23 23 F 1.35102 * 119.99214 * 180.02562 * 22 20 19 24 24 C 1.38298 * 120.00874 * 359.97438 * 22 20 19 25 25 H 0.97002 * 119.99830 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46966 * 59.99568 * 9 7 2 27 27 H 1.08995 * 109.46977 * 300.00285 * 9 7 2 28 28 H 1.09005 * 109.47234 * 60.00014 * 10 9 7 29 29 H 1.09003 * 109.47423 * 299.99926 * 10 9 7 30 30 H 1.08990 * 109.47436 * 60.00197 * 11 10 9 31 31 H 1.09002 * 109.47143 * 299.99792 * 11 10 9 32 32 H 0.97002 * 119.99986 * 359.97438 * 12 11 10 33 33 H 1.08990 * 109.47002 * 59.99971 * 15 13 12 34 34 H 1.09002 * 109.46863 * 300.00004 * 15 13 12 35 35 H 1.07993 * 120.00975 * 359.97438 * 18 17 16 36 36 H 1.08005 * 119.95874 * 180.02562 * 19 18 17 37 37 H 1.08002 * 120.03819 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 -0.0001 12 7 2.4323 -6.1006 0.0005 13 6 1.9831 -7.3713 0.0006 14 8 0.7907 -7.5929 -0.0003 15 6 2.9624 -8.5167 0.0007 16 16 2.0554 -10.0877 0.0001 17 6 3.3441 -11.2893 0.0010 18 6 4.6733 -10.8840 0.0024 19 6 5.6824 -11.8269 0.0037 20 6 5.3716 -13.1759 0.0040 21 9 6.3608 -14.0961 0.0109 22 6 4.0462 -13.5840 0.0025 23 9 3.7451 -14.9011 0.0034 24 6 3.0328 -12.6430 0.0013 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5566 0.8902 28 1 2.8720 -3.6043 0.8906 29 1 2.8720 -3.6043 -0.8895 30 1 0.8540 -5.0446 -0.8902 31 1 0.8534 -5.0451 0.8897 32 1 3.3860 -5.9233 0.0008 33 1 3.5891 -8.4588 0.8905 34 1 3.5891 -8.4590 -0.8894 35 1 4.9172 -9.8320 0.0026 36 1 6.7154 -11.5115 0.0052 37 1 2.0004 -12.9603 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171505159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:55 Heat of formation + Delta-G solvation = -114.820338 kcal Electronic energy + Delta-G solvation = -21590.603737 eV Core-core repulsion = 17708.706758 eV Total energy + Delta-G solvation = -3881.896978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.89962 -48.97091 -39.68395 -39.26305 -35.60991 -33.46912 -31.93645 -31.54059 -31.11471 -29.87919 -26.59302 -24.02691 -23.42804 -23.11679 -20.98019 -20.30733 -18.95237 -18.02355 -17.63943 -17.22507 -16.75587 -16.74766 -16.34509 -16.01997 -15.38398 -15.38102 -15.07755 -14.67872 -14.59857 -14.53787 -14.42685 -13.72682 -13.59486 -13.34753 -12.80369 -12.66291 -12.35411 -11.97770 -11.89968 -11.80502 -10.96151 -10.84230 -10.68735 -10.65505 -10.19827 -10.14217 -9.96745 -9.55066 -9.50777 -9.19526 -9.01589 -8.43091 -7.85594 -6.07535 -4.11116 0.25581 0.41907 0.76780 1.82514 2.42522 2.70697 3.09908 3.26617 3.31037 3.33444 3.35742 3.83999 3.98342 4.28156 4.38572 4.44815 4.48554 4.51003 4.73436 4.87685 5.22394 5.25320 5.28332 5.32945 5.45167 5.56112 5.64540 6.03173 6.13773 6.25837 6.47542 6.67187 6.89087 7.40086 7.56151 7.67715 7.90323 8.06086 8.31037 8.95384 9.53476 11.03614 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.038575 B = 0.001758 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.677478 B =15921.092731 C =16615.718576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.717 5.717 13 C 0.526 3.474 14 O -0.524 6.524 15 C -0.159 4.159 16 S 0.001 5.999 17 C -0.085 4.085 18 C -0.121 4.121 19 C -0.101 4.101 20 C 0.055 3.945 21 F -0.129 7.129 22 C 0.091 3.909 23 F -0.125 7.125 24 C -0.110 4.110 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.401 0.599 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.743 -25.788 0.006 28.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.369 5.369 13 C 0.309 3.691 14 O -0.400 6.400 15 C -0.311 4.311 16 S 0.247 5.753 17 C -0.198 4.198 18 C -0.146 4.146 19 C -0.121 4.121 20 C 0.032 3.968 21 F -0.107 7.107 22 C 0.069 3.931 23 F -0.103 7.103 24 C -0.135 4.135 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.235 0.765 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.159 0.841 36 H 0.168 0.832 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.452 -25.898 0.010 27.569 hybrid contribution 2.564 0.805 -0.010 2.687 sum 12.016 -25.092 0.001 27.821 Atomic orbital electron populations 1.69962 1.06058 1.26767 1.50356 1.25035 0.94873 0.99345 0.95213 0.86575 0.79783 0.83397 0.78116 1.20643 1.21167 1.19903 1.21182 0.92973 0.90901 1.51189 0.92639 1.19033 0.93836 0.90815 0.97742 1.21902 0.99826 0.93186 1.00969 1.21744 0.91758 0.84748 1.02372 1.46106 1.11156 1.05354 1.74242 1.19441 0.88683 0.83526 0.77498 1.90779 1.16081 1.84169 1.49006 1.23960 1.02997 0.95970 1.08147 1.86508 1.04909 0.93481 1.90445 1.22067 0.97972 0.97478 1.02324 1.21142 0.90664 1.00382 1.02373 1.21001 1.01348 0.89873 0.99897 1.17638 0.83622 0.87403 1.08170 1.91540 1.59813 1.65266 1.94097 1.17485 0.91849 0.78730 1.05037 1.91555 1.93747 1.31197 1.93822 1.20569 0.99675 0.90205 1.03099 0.92867 0.96225 0.96204 0.92622 0.92632 0.91409 0.91417 0.76542 0.86139 0.86139 0.84091 0.83225 0.82983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.12 -2.18 5.27 -26.73 -0.14 -2.32 16 11 C 0.12 1.84 5.67 -4.04 -0.02 1.82 16 12 N -0.72 -8.51 5.56 -60.29 -0.33 -8.85 16 13 C 0.53 6.45 7.85 -10.99 -0.09 6.36 16 14 O -0.52 -8.79 15.86 5.56 0.09 -8.70 16 15 C -0.16 -1.21 4.82 36.01 0.17 -1.04 16 16 S 0.00 0.01 21.06 -107.50 -2.26 -2.26 16 17 C -0.08 -0.65 6.11 -39.07 -0.24 -0.89 16 18 C -0.12 -0.73 9.36 -39.36 -0.37 -1.10 16 19 C -0.10 -0.62 10.01 -39.56 -0.40 -1.01 16 20 C 0.05 0.45 7.30 -39.35 -0.29 0.16 16 21 F -0.13 -1.20 17.18 2.25 0.04 -1.16 16 22 C 0.09 0.79 7.30 -39.40 -0.29 0.50 16 23 F -0.12 -1.21 17.18 2.25 0.04 -1.17 16 24 C -0.11 -0.87 9.77 -39.31 -0.38 -1.26 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.40 3.45 8.47 -40.82 -0.35 3.10 16 33 H 0.12 0.61 7.74 -51.93 -0.40 0.21 16 34 H 0.12 0.61 7.75 -51.92 -0.40 0.21 16 35 H 0.14 0.52 5.87 -52.49 -0.31 0.21 16 36 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -32.43 344.84 -8.49 -40.92 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -4.38 Total: -3.12 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.59 Total: -11.34 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.40 Total: -34.33 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.08 Total: -2.33 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.26 Total: -2.26 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.43 -8.49 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.903 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds