Wall clock time and date at job start Tue Mar 31 2020 11:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99887 * 2 1 4 4 H 1.48496 * 109.46863 * 269.99972 * 3 2 1 5 5 H 1.48500 * 109.47027 * 29.99864 * 3 2 1 6 6 H 1.48499 * 109.47163 * 149.99929 * 3 2 1 7 7 C 1.37875 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99794 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47145 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47225 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00255 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99826 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00035 * 179.97438 * 13 12 11 16 16 S 1.81400 * 109.46935 * 180.02562 * 15 13 12 17 17 C 1.76204 * 102.99919 * 180.02562 * 16 15 13 18 18 C 1.38960 * 120.04139 * 0.02562 * 17 16 15 19 19 C 1.38113 * 119.98359 * 179.97438 * 18 17 16 20 20 C 1.38434 * 120.08051 * 359.97438 * 19 18 17 21 21 F 1.35103 * 119.95471 * 180.27750 * 20 19 18 22 22 C 1.38675 * 120.09103 * 0.02562 * 20 19 18 23 23 F 1.35102 * 119.99214 * 180.02562 * 22 20 19 24 24 C 1.38298 * 120.00874 * 359.97438 * 22 20 19 25 25 H 0.97002 * 119.99830 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46966 * 59.99568 * 9 7 2 27 27 H 1.08995 * 109.46977 * 300.00285 * 9 7 2 28 28 H 1.09005 * 109.47234 * 60.00014 * 10 9 7 29 29 H 1.09003 * 109.47423 * 299.99926 * 10 9 7 30 30 H 1.08990 * 109.47436 * 60.00197 * 11 10 9 31 31 H 1.09002 * 109.47143 * 299.99792 * 11 10 9 32 32 H 0.97002 * 119.99986 * 359.97438 * 12 11 10 33 33 H 1.08990 * 109.47002 * 59.99971 * 15 13 12 34 34 H 1.09002 * 109.46863 * 300.00004 * 15 13 12 35 35 H 1.07993 * 120.00975 * 359.97438 * 18 17 16 36 36 H 1.08005 * 119.95874 * 180.02562 * 19 18 17 37 37 H 1.08002 * 120.03819 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 -0.0001 12 7 2.4323 -6.1006 0.0005 13 6 1.9831 -7.3713 0.0006 14 8 0.7907 -7.5929 -0.0003 15 6 2.9624 -8.5167 0.0007 16 16 2.0554 -10.0877 0.0001 17 6 3.3441 -11.2893 0.0010 18 6 4.6733 -10.8840 0.0024 19 6 5.6824 -11.8269 0.0037 20 6 5.3716 -13.1759 0.0040 21 9 6.3608 -14.0961 0.0109 22 6 4.0462 -13.5840 0.0025 23 9 3.7451 -14.9011 0.0034 24 6 3.0328 -12.6430 0.0013 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5566 0.8902 28 1 2.8720 -3.6043 0.8906 29 1 2.8720 -3.6043 -0.8895 30 1 0.8540 -5.0446 -0.8902 31 1 0.8534 -5.0451 0.8897 32 1 3.3860 -5.9233 0.0008 33 1 3.5891 -8.4588 0.8905 34 1 3.5891 -8.4590 -0.8894 35 1 4.9172 -9.8320 0.0026 36 1 6.7154 -11.5115 0.0052 37 1 2.0004 -12.9603 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171505159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:54 Heat of formation + Delta-G solvation = -134.485973 kcal Electronic energy + Delta-G solvation = -21591.456503 eV Core-core repulsion = 17708.706758 eV Total energy + Delta-G solvation = -3882.749744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.55891 -49.63623 -40.73082 -39.80589 -36.99500 -35.21361 -33.28679 -32.20252 -31.88414 -30.78031 -28.25347 -25.03278 -24.42512 -23.97505 -22.32062 -21.58593 -19.62963 -18.65621 -18.54157 -18.24792 -18.06397 -17.40662 -17.40386 -16.99506 -16.56999 -16.30854 -16.06082 -15.83321 -15.70503 -15.25965 -15.07947 -14.67931 -14.30502 -14.25526 -14.20254 -13.76436 -13.57161 -13.25935 -13.20368 -12.74021 -12.53763 -12.52363 -12.36444 -11.65623 -11.61351 -11.27628 -11.24255 -11.00553 -10.72011 -10.54398 -10.15980 -10.10656 -8.51731 -8.18608 -6.29900 -0.31555 -0.10733 0.11376 1.22438 1.43035 1.43912 1.49630 1.54768 2.15078 2.17305 2.43256 2.75060 3.15479 3.23943 3.49224 3.63059 3.82019 3.96900 3.99957 4.17796 4.22103 4.24132 4.38034 4.56977 4.66854 4.78206 4.85530 4.93086 4.96287 4.99577 5.19404 5.39683 5.53946 5.58342 5.72649 5.85901 6.22930 6.47495 6.88299 7.16019 7.39912 8.93280 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.038575 B = 0.001758 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.677478 B =15921.092731 C =16615.718576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.130 3.870 12 N -0.704 5.704 13 C 0.523 3.477 14 O -0.576 6.576 15 C -0.142 4.142 16 S -0.054 6.054 17 C -0.081 4.081 18 C -0.110 4.110 19 C -0.091 4.091 20 C 0.042 3.958 21 F -0.138 7.138 22 C 0.072 3.928 23 F -0.138 7.138 24 C -0.116 4.116 25 H 0.262 0.738 26 H -0.009 1.009 27 H -0.009 1.009 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.421 0.579 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.180 0.820 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.147 -25.261 0.008 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.017 4.017 10 C -0.139 4.139 11 C 0.006 3.994 12 N -0.357 5.357 13 C 0.308 3.692 14 O -0.455 6.455 15 C -0.292 4.292 16 S 0.191 5.809 17 C -0.195 4.195 18 C -0.134 4.134 19 C -0.111 4.111 20 C 0.019 3.981 21 F -0.117 7.117 22 C 0.050 3.950 23 F -0.116 7.116 24 C -0.141 4.141 25 H 0.071 0.929 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.259 0.741 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.192 0.808 36 H 0.197 0.803 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 12.918 -25.392 0.012 28.489 hybrid contribution 1.480 0.610 -0.011 1.601 sum 14.397 -24.782 0.001 28.660 Atomic orbital electron populations 1.70112 1.07941 1.27730 1.51760 1.26028 0.95735 1.03575 0.94905 0.85430 0.78727 0.78374 0.78396 1.19917 1.21265 1.18303 1.21695 0.93808 0.91971 1.50264 0.91360 1.18965 0.94557 0.93115 0.95049 1.21592 0.98374 0.91564 1.02386 1.21255 0.91953 0.85406 1.00834 1.45801 1.11549 1.04398 1.73963 1.20168 0.88814 0.84306 0.75875 1.90772 1.18742 1.84947 1.51083 1.23912 1.01549 0.92148 1.11617 1.86844 1.07212 0.95756 1.91100 1.21956 0.98129 0.96490 1.02928 1.21531 0.89486 1.02001 1.00383 1.21327 1.02903 0.88594 0.98256 1.17942 0.83132 0.88297 1.08766 1.91513 1.60079 1.65866 1.94259 1.17671 0.92510 0.78366 1.06428 1.91515 1.93904 1.32107 1.94104 1.20635 0.99743 0.90569 1.03177 0.92891 0.99038 0.99015 0.91085 0.91079 0.93139 0.93149 0.74110 0.82524 0.82525 0.80817 0.80272 0.82887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.06 13.29 21.45 0.28 -55.78 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.54 -28.98 9.11 25.60 0.23 -28.75 16 8 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.04 4.97 29.85 0.15 1.18 16 10 C -0.10 -3.51 5.27 30.59 0.16 -3.35 16 11 C 0.13 4.05 5.67 86.38 0.49 4.54 16 12 N -0.70 -14.92 5.56 -463.06 -2.57 -17.49 16 13 C 0.52 11.73 7.85 87.66 0.69 12.42 16 14 O -0.58 -19.25 15.86 -3.04 -0.05 -19.30 16 15 C -0.14 -1.60 4.82 71.24 0.34 -1.26 16 16 S -0.05 -0.94 21.06 -56.49 -1.19 -2.13 16 17 C -0.08 -1.08 6.11 22.60 0.14 -0.94 16 18 C -0.11 -0.88 9.36 22.41 0.21 -0.67 16 19 C -0.09 -0.79 10.01 22.29 0.22 -0.57 16 20 C 0.04 0.62 7.30 22.42 0.16 0.79 16 21 F -0.14 -2.45 17.18 44.97 0.77 -1.67 16 22 C 0.07 1.23 7.30 22.39 0.16 1.39 16 23 F -0.14 -2.76 17.18 44.97 0.77 -1.99 16 24 C -0.12 -1.78 9.77 22.44 0.22 -1.56 16 25 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 26 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.42 5.46 8.47 -92.71 -0.79 4.68 16 33 H 0.16 0.71 7.74 -2.40 -0.02 0.69 16 34 H 0.16 0.71 7.75 -2.39 -0.02 0.69 16 35 H 0.17 0.21 5.87 -2.91 -0.02 0.19 16 36 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 37 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -73.91 344.84 4.01 -69.90 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: 0.32 Total: 0.41 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 3.64 Total: -16.60 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -2.29 Total: -73.27 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 1.54 Total: -3.66 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -1.19 Total: -2.13 kcal Total: -73.91 4.01 -69.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.588 kcal (2) G-P(sol) polarization free energy of solvation -73.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds