Wall clock time and date at job start Tue Mar 31 2020 10:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76196 * 103.00314 * 2 1 4 4 C 1.38976 * 120.08364 * 180.02562 * 3 2 1 5 5 C 1.38084 * 119.92114 * 180.02562 * 4 3 2 6 6 C 1.38296 * 120.07872 * 0.26137 * 5 4 3 7 7 S 1.76205 * 119.92080 * 179.72327 * 6 5 4 8 8 O 1.42098 * 106.40349 * 203.53876 * 7 6 5 9 9 O 1.42098 * 106.39720 * 336.45374 * 7 6 5 10 10 N 1.65592 * 107.21941 * 89.99444 * 7 6 5 11 11 C 1.46502 * 120.00314 * 270.00047 * 10 7 6 12 12 C 1.46502 * 120.00217 * 90.00002 * 10 7 6 13 13 H 1.09003 * 109.46818 * 0.02562 * 12 10 7 14 14 C 1.53007 * 109.47062 * 119.99733 * 12 10 7 15 15 C 1.50687 * 109.47470 * 239.99858 * 12 10 7 16 16 H 1.08006 * 120.00400 * 0.02562 * 15 12 10 17 17 C 1.37879 * 120.00271 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00238 * 180.02562 * 17 15 12 19 19 Si 1.86803 * 119.99827 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.46929 * 89.99590 * 19 17 15 21 21 H 1.48494 * 109.47190 * 209.99560 * 19 17 15 22 22 H 1.48502 * 109.46931 * 329.99981 * 19 17 15 23 23 C 1.38306 * 120.16184 * 359.48370 * 6 5 4 24 24 C 1.38084 * 120.08129 * 0.51013 * 23 6 5 25 25 H 1.09008 * 109.46833 * 299.99779 * 1 2 3 26 26 H 1.08996 * 109.47174 * 59.99790 * 1 2 3 27 27 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.03871 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.95739 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.46888 * 90.00037 * 11 10 7 31 31 H 1.08999 * 109.47437 * 210.00245 * 11 10 7 32 32 H 1.09001 * 109.46638 * 330.00444 * 11 10 7 33 33 H 1.08997 * 109.47124 * 180.02562 * 14 12 10 34 34 H 1.09005 * 109.47227 * 300.00676 * 14 12 10 35 35 H 1.09004 * 109.46587 * 59.99985 * 14 12 10 36 36 H 0.97003 * 120.00279 * 180.02562 * 18 17 15 37 37 H 1.08001 * 119.96440 * 180.26098 * 23 6 5 38 38 H 1.07998 * 120.04285 * 179.71995 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5388 2.1250 -0.0005 5 6 3.8457 3.4713 0.0000 6 6 2.8330 4.4130 0.0065 7 16 3.2293 6.1299 0.0146 8 8 2.1028 6.7992 0.5643 9 8 4.5382 6.2369 0.5574 10 7 3.3370 6.6155 -1.5649 11 6 4.6208 6.5450 -2.2671 12 6 2.1485 7.1157 -2.2601 13 1 1.2952 7.0948 -1.5821 14 6 2.3957 8.5528 -2.7236 15 6 1.8620 6.2446 -3.4559 16 1 2.5012 5.4022 -3.6758 17 6 0.7834 6.5222 -4.2686 18 7 0.5332 5.7616 -5.3119 19 14 -0.3224 7.9788 -3.8879 20 1 0.1940 9.1867 -4.5804 21 1 -1.7009 7.6900 -4.3584 22 1 -0.3393 8.2177 -2.4223 23 6 1.5098 4.0106 0.0018 24 6 1.1953 2.6660 0.0011 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 4.3302 1.3901 -0.0014 29 1 4.8779 3.7891 0.0000 30 1 4.7179 5.5726 -2.7499 31 1 4.6665 7.3311 -3.0208 32 1 5.4333 6.6787 -1.5529 33 1 1.5113 8.9251 -3.2405 34 1 2.6030 9.1830 -1.8587 35 1 3.2491 8.5741 -3.4014 36 1 -0.2254 5.9572 -5.8839 37 1 0.7214 4.7488 0.0026 38 1 0.1618 2.3525 0.0020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171709355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:16 Heat of formation + Delta-G solvation = -34.992871 kcal Electronic energy + Delta-G solvation = -22639.020399 eV Core-core repulsion = 19314.425385 eV Total energy + Delta-G solvation = -3324.595013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.93023 -36.88206 -36.45102 -35.42064 -32.56311 -31.52436 -31.10316 -30.05832 -29.02453 -25.84288 -25.04170 -23.37404 -22.70381 -20.89887 -18.67287 -17.95133 -17.39484 -16.87607 -16.50622 -15.83150 -15.26288 -14.89539 -14.71797 -14.51882 -14.04462 -13.72728 -13.67476 -13.39159 -13.04974 -13.00037 -12.74873 -12.33382 -12.29925 -12.15794 -12.01608 -11.68199 -11.46588 -11.35648 -11.27669 -11.08041 -10.77006 -10.52193 -10.32450 -10.18218 -10.07231 -9.60569 -9.43991 -8.99332 -8.70223 -8.14651 -7.65073 -6.19850 -4.21366 0.68773 0.98716 1.32221 1.38838 2.17440 3.19392 3.29561 3.32387 3.34142 3.66685 4.19770 4.29194 4.58800 4.83380 4.86736 4.86877 4.92075 5.10748 5.29107 5.42381 5.51426 5.53373 5.63719 5.96259 6.03282 6.07707 6.13227 6.17351 6.22081 6.24066 6.36023 6.50802 6.52201 6.80828 6.83209 7.24767 7.29309 7.57799 8.39037 8.84466 9.40531 10.92524 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.005569 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.318863 B = 5026.654412 C = 6320.407940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.113 6.113 3 C -0.037 4.037 4 C -0.127 4.127 5 C -0.002 4.002 6 C -0.672 4.672 7 S 2.689 3.311 8 O -0.962 6.962 9 O -0.972 6.972 10 N -0.974 5.974 11 C 0.096 3.904 12 C 0.237 3.763 13 H 0.058 0.942 14 C -0.160 4.160 15 C -0.528 4.528 16 H 0.083 0.917 17 C 0.076 3.924 18 N -0.893 5.893 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.260 1.260 23 C 0.016 3.984 24 C -0.155 4.155 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.265 0.735 37 H 0.144 0.856 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.809 -7.379 9.669 12.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.131 5.869 3 C -0.150 4.150 4 C -0.151 4.151 5 C -0.023 4.023 6 C -0.760 4.760 7 S 2.780 3.220 8 O -0.952 6.952 9 O -0.962 6.962 10 N -0.813 5.813 11 C -0.050 4.050 12 C 0.133 3.867 13 H 0.076 0.924 14 C -0.219 4.219 15 C -0.567 4.567 16 H 0.101 0.899 17 C -0.127 4.127 18 N -0.530 5.530 19 Si 0.703 3.297 20 H -0.202 1.202 21 H -0.222 1.222 22 H -0.185 1.185 23 C -0.006 4.006 24 C -0.180 4.180 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.127 0.873 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.161 0.839 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.442 -8.012 10.241 13.451 hybrid contribution -1.774 1.054 -0.557 2.137 sum 1.669 -6.959 9.684 12.041 Atomic orbital electron populations 1.23733 0.94361 1.07223 1.06285 1.85406 1.06963 1.02929 1.91645 1.21987 0.97026 0.96531 0.99480 1.20775 0.94262 0.96179 1.03889 1.20791 0.98602 0.91988 0.90968 1.31194 1.00672 1.26690 1.17452 1.01899 0.73202 0.73764 0.73153 1.93544 1.52782 1.72118 1.76803 1.93510 1.38866 1.86534 1.77329 1.57108 1.16579 1.77228 1.30399 1.21377 0.83136 1.02766 0.97731 1.19142 0.82259 0.91383 0.93958 0.92435 1.22432 1.01438 0.97983 1.00021 1.21220 1.13038 1.13647 1.08746 0.89924 1.24890 0.96980 0.96203 0.94620 1.69876 1.29117 1.38576 1.15442 0.87062 0.79696 0.83102 0.79792 1.20185 1.22159 1.18487 1.20818 0.94847 0.96096 0.88804 1.21228 0.98416 0.93186 1.05125 0.89486 0.89124 0.87270 0.84860 0.83999 0.93164 0.90231 0.91484 0.93160 0.94478 0.92102 0.92455 0.83862 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.15 101.05 0.92 -0.36 16 2 S -0.11 -1.32 22.56 -107.50 -2.43 -3.75 16 3 C -0.04 -0.53 6.11 -39.03 -0.24 -0.77 16 4 C -0.13 -1.80 9.79 -39.36 -0.39 -2.18 16 5 C 0.00 -0.03 9.51 -39.62 -0.38 -0.41 16 6 C -0.67 -11.62 5.98 -39.54 -0.24 -11.85 16 7 S 2.69 50.28 5.68 -107.50 -0.61 49.67 16 8 O -0.96 -20.07 15.85 -57.17 -0.91 -20.97 16 9 O -0.97 -18.36 15.88 -57.17 -0.91 -19.27 16 10 N -0.97 -19.05 3.06 -115.85 -0.35 -19.40 16 11 C 0.10 1.60 9.90 59.85 0.59 2.20 16 12 C 0.24 5.34 2.21 -69.08 -0.15 5.19 16 13 H 0.06 1.35 5.97 -51.93 -0.31 1.04 16 14 C -0.16 -3.33 8.65 37.16 0.32 -3.00 16 15 C -0.53 -13.65 8.95 -34.45 -0.31 -13.96 16 16 H 0.08 2.31 7.89 -52.48 -0.41 1.90 16 17 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 18 N -0.89 -25.79 13.96 55.43 0.77 -25.02 16 19 Si 0.87 20.71 24.37 -169.99 -4.14 16.57 16 20 H -0.28 -6.32 6.87 56.52 0.39 -5.93 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.26 -5.97 6.53 56.52 0.37 -5.60 16 23 C 0.02 0.26 9.51 -39.61 -0.38 -0.11 16 24 C -0.16 -2.32 9.36 -39.36 -0.37 -2.69 16 25 H 0.09 0.68 7.75 -51.92 -0.40 0.28 16 26 H 0.09 0.82 7.75 -51.93 -0.40 0.42 16 27 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.14 1.88 7.61 -52.49 -0.40 1.48 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.29 6.43 -51.93 -0.33 0.96 16 32 H 0.07 0.98 7.02 -51.93 -0.36 0.62 16 33 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.18 6.66 -51.93 -0.35 0.83 16 36 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.14 2.37 7.62 -52.49 -0.40 1.97 16 38 H 0.13 1.61 5.88 -52.49 -0.31 1.31 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -31.59 331.09 -9.01 -40.60 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.72 Total: 2.58 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -0.70 Total: -25.99 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.42 Total: -44.42 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -1.81 Total: -40.25 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.14 Total: 16.57 kcal Atomic # 16 Polarization: 48.96 SS G_CDS: -3.04 Total: 45.92 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.59 -9.01 -40.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.610 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds