Wall clock time and date at job start Tue Mar 31 2020 10:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76196 * 103.00314 * 2 1 4 4 C 1.38976 * 120.08364 * 180.02562 * 3 2 1 5 5 C 1.38084 * 119.92114 * 180.02562 * 4 3 2 6 6 C 1.38296 * 120.07872 * 0.26137 * 5 4 3 7 7 S 1.76205 * 119.92080 * 179.72327 * 6 5 4 8 8 O 1.42098 * 106.40349 * 203.53876 * 7 6 5 9 9 O 1.42098 * 106.39720 * 336.45374 * 7 6 5 10 10 N 1.65592 * 107.21941 * 89.99444 * 7 6 5 11 11 C 1.46502 * 120.00314 * 270.00047 * 10 7 6 12 12 C 1.46502 * 120.00217 * 90.00002 * 10 7 6 13 13 H 1.09003 * 109.46818 * 0.02562 * 12 10 7 14 14 C 1.53007 * 109.47062 * 119.99733 * 12 10 7 15 15 C 1.50687 * 109.47470 * 239.99858 * 12 10 7 16 16 H 1.08006 * 120.00400 * 0.02562 * 15 12 10 17 17 C 1.37879 * 120.00271 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00238 * 180.02562 * 17 15 12 19 19 Si 1.86803 * 119.99827 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.46929 * 89.99590 * 19 17 15 21 21 H 1.48494 * 109.47190 * 209.99560 * 19 17 15 22 22 H 1.48502 * 109.46931 * 329.99981 * 19 17 15 23 23 C 1.38306 * 120.16184 * 359.48370 * 6 5 4 24 24 C 1.38084 * 120.08129 * 0.51013 * 23 6 5 25 25 H 1.09008 * 109.46833 * 299.99779 * 1 2 3 26 26 H 1.08996 * 109.47174 * 59.99790 * 1 2 3 27 27 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.03871 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.95739 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.46888 * 90.00037 * 11 10 7 31 31 H 1.08999 * 109.47437 * 210.00245 * 11 10 7 32 32 H 1.09001 * 109.46638 * 330.00444 * 11 10 7 33 33 H 1.08997 * 109.47124 * 180.02562 * 14 12 10 34 34 H 1.09005 * 109.47227 * 300.00676 * 14 12 10 35 35 H 1.09004 * 109.46587 * 59.99985 * 14 12 10 36 36 H 0.97003 * 120.00279 * 180.02562 * 18 17 15 37 37 H 1.08001 * 119.96440 * 180.26098 * 23 6 5 38 38 H 1.07998 * 120.04285 * 179.71995 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5388 2.1250 -0.0005 5 6 3.8457 3.4713 0.0000 6 6 2.8330 4.4130 0.0065 7 16 3.2293 6.1299 0.0146 8 8 2.1028 6.7992 0.5643 9 8 4.5382 6.2369 0.5574 10 7 3.3370 6.6155 -1.5649 11 6 4.6208 6.5450 -2.2671 12 6 2.1485 7.1157 -2.2601 13 1 1.2952 7.0948 -1.5821 14 6 2.3957 8.5528 -2.7236 15 6 1.8620 6.2446 -3.4559 16 1 2.5012 5.4022 -3.6758 17 6 0.7834 6.5222 -4.2686 18 7 0.5332 5.7616 -5.3119 19 14 -0.3224 7.9788 -3.8879 20 1 0.1940 9.1867 -4.5804 21 1 -1.7009 7.6900 -4.3584 22 1 -0.3393 8.2177 -2.4223 23 6 1.5098 4.0106 0.0018 24 6 1.1953 2.6660 0.0011 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 4.3302 1.3901 -0.0014 29 1 4.8779 3.7891 0.0000 30 1 4.7179 5.5726 -2.7499 31 1 4.6665 7.3311 -3.0208 32 1 5.4333 6.6787 -1.5529 33 1 1.5113 8.9251 -3.2405 34 1 2.6030 9.1830 -1.8587 35 1 3.2491 8.5741 -3.4014 36 1 -0.2254 5.9572 -5.8839 37 1 0.7214 4.7488 0.0026 38 1 0.1618 2.3525 0.0020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171709355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:15 Heat of formation + Delta-G solvation = -55.950874 kcal Electronic energy + Delta-G solvation = -22639.929206 eV Core-core repulsion = 19314.425385 eV Total energy + Delta-G solvation = -3325.503820 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.09283 -38.42493 -38.08467 -36.95177 -34.52256 -32.66128 -32.26961 -31.78716 -29.78492 -27.36956 -26.91669 -24.58958 -23.86493 -22.64253 -20.06553 -19.21946 -18.97389 -18.35819 -18.19314 -17.33983 -16.77796 -16.07534 -15.96588 -15.78532 -15.33554 -15.05369 -14.87428 -14.72208 -14.53324 -14.19169 -14.02673 -13.97267 -13.81581 -13.52125 -13.28816 -13.18387 -13.06624 -12.96843 -12.76506 -12.50651 -12.18528 -12.00848 -11.97611 -11.46569 -11.40239 -11.29013 -11.17943 -10.74417 -10.17491 -9.74713 -8.61975 -8.28361 -6.32365 -0.64782 -0.34170 0.20898 0.38420 1.29112 1.31830 1.39943 1.47669 1.92691 2.32091 2.36198 2.75904 3.06304 3.24818 3.66862 3.77189 4.02583 4.14784 4.19321 4.21116 4.30762 4.46487 4.48903 4.66999 4.71395 4.79064 4.80586 4.82196 4.86230 4.90839 4.99048 5.00908 5.12409 5.18051 5.48321 5.57522 5.66273 5.83570 6.34583 6.73088 7.32685 8.87237 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.005569 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.318863 B = 5026.654412 C = 6320.407940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.107 6.107 3 C -0.045 4.045 4 C -0.131 4.131 5 C -0.009 4.009 6 C -0.689 4.689 7 S 2.701 3.299 8 O -0.988 6.988 9 O -0.975 6.975 10 N -0.981 5.981 11 C 0.089 3.911 12 C 0.238 3.762 13 H 0.049 0.951 14 C -0.161 4.161 15 C -0.516 4.516 16 H 0.051 0.949 17 C 0.026 3.974 18 N -0.939 5.939 19 Si 0.924 3.076 20 H -0.260 1.260 21 H -0.298 1.298 22 H -0.249 1.249 23 C -0.009 4.009 24 C -0.163 4.163 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.135 0.865 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.266 0.734 37 H 0.137 0.863 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -7.827 10.595 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.137 5.863 3 C -0.158 4.158 4 C -0.155 4.155 5 C -0.031 4.031 6 C -0.780 4.780 7 S 2.794 3.206 8 O -0.978 6.978 9 O -0.966 6.966 10 N -0.819 5.819 11 C -0.056 4.056 12 C 0.132 3.868 13 H 0.066 0.934 14 C -0.220 4.220 15 C -0.555 4.555 16 H 0.069 0.931 17 C -0.173 4.173 18 N -0.578 5.578 19 Si 0.751 3.249 20 H -0.186 1.186 21 H -0.225 1.225 22 H -0.173 1.173 23 C -0.030 4.030 24 C -0.187 4.187 25 H 0.117 0.883 26 H 0.106 0.894 27 H 0.153 0.847 28 H 0.178 0.822 29 H 0.177 0.823 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.154 0.846 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.660 -8.433 11.180 14.475 hybrid contribution -1.798 0.971 -0.804 2.196 sum 1.862 -7.463 10.376 12.916 Atomic orbital electron populations 1.23902 0.91851 1.09056 1.06733 1.85406 1.09751 1.00268 1.90861 1.22358 0.97111 0.98322 0.98039 1.21151 0.95134 0.96273 1.02928 1.21087 0.99036 0.92375 0.90566 1.30927 1.01466 1.25798 1.19839 1.01360 0.72607 0.74040 0.72569 1.93501 1.53673 1.73386 1.77288 1.93493 1.38882 1.86970 1.77243 1.57077 1.16534 1.77745 1.30545 1.21570 0.82620 1.02938 0.98432 1.18938 0.83348 0.92033 0.92476 0.93365 1.22397 1.01635 0.96808 1.01176 1.21364 1.11933 1.12861 1.09382 0.93072 1.25578 0.98496 0.98667 0.94520 1.70003 1.30170 1.40713 1.16960 0.86241 0.77731 0.80659 0.80298 1.18592 1.22521 1.17349 1.20948 0.94768 0.97169 0.90163 1.21493 0.99900 0.92541 1.04808 0.88327 0.89399 0.84723 0.82235 0.82260 0.93292 0.89808 0.89138 0.93805 0.92177 0.91009 0.92489 0.84553 0.82996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.15 113.37 1.04 -1.14 16 2 S -0.11 -2.27 22.56 -56.49 -1.27 -3.54 16 3 C -0.04 -1.22 6.11 22.62 0.14 -1.08 16 4 C -0.13 -3.51 9.79 22.41 0.22 -3.29 16 5 C -0.01 -0.28 9.51 22.25 0.21 -0.07 16 6 C -0.69 -23.81 5.98 22.30 0.13 -23.67 16 7 S 2.70 100.16 5.68 -56.49 -0.32 99.84 16 8 O -0.99 -41.32 15.85 -128.00 -2.03 -43.34 16 9 O -0.98 -35.85 15.88 -128.00 -2.03 -37.88 16 10 N -0.98 -37.85 3.06 -520.44 -1.59 -39.44 16 11 C 0.09 2.91 9.90 127.77 1.27 4.18 16 12 C 0.24 10.59 2.21 44.24 0.10 10.69 16 13 H 0.05 2.26 5.97 -2.39 -0.01 2.24 16 14 C -0.16 -6.43 8.65 71.98 0.62 -5.81 16 15 C -0.52 -27.03 8.95 25.60 0.23 -26.80 16 16 H 0.05 2.95 7.89 -2.91 -0.02 2.93 16 17 C 0.03 1.43 5.45 84.66 0.46 1.89 16 18 N -0.94 -55.29 13.96 21.45 0.30 -54.99 16 19 Si 0.92 42.33 24.37 68.60 1.67 44.00 16 20 H -0.26 -11.23 6.87 99.48 0.68 -10.55 16 21 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.25 -10.90 6.53 99.48 0.65 -10.25 16 23 C -0.01 -0.31 9.51 22.25 0.21 -0.10 16 24 C -0.16 -4.76 9.36 22.41 0.21 -4.55 16 25 H 0.10 1.28 7.75 -2.39 -0.02 1.26 16 26 H 0.09 1.40 7.75 -2.39 -0.02 1.39 16 27 H 0.13 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.16 4.01 7.61 -2.91 -0.02 3.99 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 2.63 6.43 -2.39 -0.02 2.61 16 32 H 0.09 2.50 7.02 -2.39 -0.02 2.49 16 33 H 0.04 1.80 3.27 -2.39 -0.01 1.79 16 34 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.07 2.66 6.66 -2.38 -0.02 2.64 16 36 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 37 H 0.14 4.69 7.62 -2.91 -0.02 4.66 16 38 H 0.15 3.58 5.88 -2.91 -0.02 3.57 16 Total: -1.00 -67.61 331.09 0.55 -67.05 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 1.00 Total: 18.07 kcal Atomic # 6 Polarization: -54.59 SS G_CDS: 4.84 Total: -49.75 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -1.29 Total: -94.44 kcal Atomic # 8 Polarization: -77.17 SS G_CDS: -4.06 Total: -81.23 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.67 Total: 44.00 kcal Atomic # 16 Polarization: 97.89 SS G_CDS: -1.60 Total: 96.29 kcal Total: -67.61 0.55 -67.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.103 kcal (2) G-P(sol) polarization free energy of solvation -67.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds