Wall clock time and date at job start Tue Mar 31 2020 10:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76207 * 103.00137 * 2 1 4 4 C 1.38972 * 120.08034 * 179.97438 * 3 2 1 5 5 C 1.38082 * 119.91615 * 180.02562 * 4 3 2 6 6 C 1.38302 * 120.08192 * 0.02562 * 5 4 3 7 7 S 1.76201 * 119.91926 * 179.97438 * 6 5 4 8 8 O 1.42101 * 106.39915 * 336.45750 * 7 6 5 9 9 O 1.42093 * 106.40141 * 203.54058 * 7 6 5 10 10 N 1.65593 * 107.21631 * 89.99794 * 7 6 5 11 11 C 1.46498 * 120.00388 * 269.99756 * 10 7 6 12 12 C 1.46505 * 119.99939 * 90.00236 * 10 7 6 13 13 H 1.09002 * 109.47068 * 359.97438 * 12 10 7 14 14 C 1.52997 * 109.47212 * 239.99810 * 12 10 7 15 15 C 1.50699 * 109.47262 * 119.99723 * 12 10 7 16 16 H 1.08000 * 119.99792 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 10 18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47438 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47045 * 120.00577 * 19 17 15 22 22 H 1.48501 * 109.46950 * 240.00369 * 19 17 15 23 23 C 1.38300 * 120.15980 * 0.27151 * 6 5 4 24 24 C 1.38083 * 120.08359 * 359.44946 * 23 6 5 25 25 H 1.08994 * 109.47296 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47253 * 300.00178 * 1 2 3 27 27 H 1.09003 * 109.47432 * 59.99705 * 1 2 3 28 28 H 1.08000 * 120.04219 * 0.02562 * 4 3 2 29 29 H 1.08000 * 119.95934 * 179.97438 * 5 4 3 30 30 H 1.08992 * 109.47421 * 270.00337 * 11 10 7 31 31 H 1.09007 * 109.46720 * 30.00347 * 11 10 7 32 32 H 1.09003 * 109.47218 * 150.00128 * 11 10 7 33 33 H 1.08996 * 109.47853 * 179.97438 * 14 12 10 34 34 H 1.09002 * 109.47153 * 300.00008 * 14 12 10 35 35 H 1.08998 * 109.47533 * 59.99637 * 14 12 10 36 36 H 0.96999 * 120.00073 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.96009 * 179.72946 * 23 6 5 38 38 H 1.08003 * 120.04527 * 180.27318 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5388 2.1250 0.0005 5 6 3.8456 3.4714 0.0011 6 6 2.8328 4.4131 0.0016 7 16 3.2292 6.1300 0.0030 8 8 4.5370 6.2394 0.5478 9 8 2.1017 6.8016 0.5477 10 7 3.3397 6.6087 -1.5784 11 6 4.6248 6.5352 -2.2779 12 6 2.1524 7.1060 -2.2779 13 1 1.2978 7.0872 -1.6016 14 6 1.8638 6.2162 -3.4886 15 6 2.3968 8.5193 -2.7402 16 1 3.3421 8.9991 -2.5339 17 6 1.4139 9.1996 -3.4273 18 7 0.2629 8.6152 -3.6789 19 14 1.7171 10.9513 -4.0009 20 1 3.0813 11.3757 -3.5959 21 1 1.5977 11.0156 -5.4796 22 1 0.7134 11.8550 -3.3835 23 6 1.5097 4.0106 0.0073 24 6 1.1952 2.6661 0.0009 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 4.3302 1.3902 0.0005 29 1 4.8777 3.7893 0.0019 30 1 5.1643 7.4731 -2.1465 31 1 5.2153 5.7158 -1.8678 32 1 4.4510 6.3618 -3.3399 33 1 0.9802 6.5857 -4.0089 34 1 2.7183 6.2346 -4.1650 35 1 1.6871 5.1939 -3.1544 36 1 -0.4287 9.0939 -4.1621 37 1 0.7214 4.7488 0.0121 38 1 0.1617 2.3525 0.0009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171709360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:18 Heat of formation + Delta-G solvation = -42.968338 kcal Electronic energy + Delta-G solvation = -22404.161584 eV Core-core repulsion = 19079.220729 eV Total energy + Delta-G solvation = -3324.940855 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.05758 -36.71843 -36.19427 -35.25384 -32.60253 -31.63312 -31.22068 -29.16556 -29.09751 -25.61724 -25.16075 -23.46194 -22.81141 -20.73136 -18.65714 -18.01368 -17.23186 -16.80321 -16.30219 -15.71707 -15.14190 -14.94704 -14.79957 -14.38457 -14.17394 -13.77986 -13.56087 -13.29377 -13.14093 -13.00630 -12.80624 -12.38221 -12.01027 -11.77801 -11.55009 -11.43383 -11.36781 -11.23367 -10.99324 -10.84456 -10.77600 -10.54534 -10.34315 -10.26492 -10.19181 -9.97934 -9.26353 -9.13746 -8.47403 -8.00263 -7.77212 -6.08952 -4.15261 0.60974 1.01287 1.19973 1.24307 2.04717 3.26310 3.27550 3.35866 3.40340 3.75546 4.31873 4.40150 4.53416 4.71666 4.73252 4.74878 4.92029 5.19411 5.22870 5.30598 5.44122 5.50678 5.57906 5.85249 5.90879 6.01258 6.12360 6.13929 6.34681 6.60856 6.70072 6.75335 6.78757 6.99244 7.41106 7.61216 7.76521 8.01798 8.25201 8.87364 9.50643 10.96861 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.004033 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.863645 B = 6941.235514 C = 7635.483836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.113 6.113 3 C -0.040 4.040 4 C -0.126 4.126 5 C -0.004 4.004 6 C -0.676 4.676 7 S 2.683 3.317 8 O -0.973 6.973 9 O -0.952 6.952 10 N -0.979 5.979 11 C 0.107 3.893 12 C 0.266 3.734 13 H 0.061 0.939 14 C -0.150 4.150 15 C -0.518 4.518 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.006 3.994 24 C -0.157 4.157 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.134 0.866 29 H 0.143 0.857 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.035 0.965 35 H 0.010 0.990 36 H 0.263 0.737 37 H 0.146 0.854 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.220 -15.983 4.761 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.130 5.870 3 C -0.154 4.154 4 C -0.151 4.151 5 C -0.025 4.025 6 C -0.763 4.763 7 S 2.772 3.228 8 O -0.964 6.964 9 O -0.942 6.942 10 N -0.820 5.820 11 C -0.039 4.039 12 C 0.163 3.837 13 H 0.078 0.922 14 C -0.209 4.209 15 C -0.558 4.558 16 H 0.083 0.917 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.015 4.015 24 C -0.182 4.182 25 H 0.128 0.872 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.152 0.848 29 H 0.161 0.839 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.054 0.946 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.164 0.836 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.790 -16.556 5.406 17.638 hybrid contribution -0.980 1.251 -0.763 1.763 sum 1.810 -15.305 4.643 16.096 Atomic orbital electron populations 1.23734 0.94338 1.07279 1.06235 1.85467 1.06943 1.02849 1.91695 1.22001 0.97020 0.96554 0.99784 1.20814 0.94283 0.96229 1.03727 1.20852 0.98780 0.91917 0.90957 1.31533 1.00548 1.27576 1.16631 1.02241 0.73434 0.73480 0.73603 1.93510 1.39092 1.86277 1.77486 1.93571 1.52548 1.71277 1.76827 1.57421 1.17084 1.76798 1.30673 1.21206 0.83651 1.00393 0.98618 1.18807 0.81087 0.93019 0.90747 0.92154 1.22138 1.02943 0.95736 1.00116 1.21363 1.01211 0.97397 1.35791 0.91741 1.24903 0.94923 0.98317 0.95720 1.69864 1.05013 1.37087 1.40990 0.86434 0.78448 0.84319 0.78180 1.19672 1.21019 1.20885 1.20904 0.95028 0.96084 0.89445 1.21260 0.98416 0.93189 1.05290 0.87217 0.89405 0.89270 0.84817 0.83905 0.92892 0.93133 0.90794 0.88775 0.94631 0.97091 0.92750 0.83644 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.15 101.05 0.92 -0.12 16 2 S -0.11 -1.15 22.56 -107.50 -2.43 -3.57 16 3 C -0.04 -0.51 6.11 -39.03 -0.24 -0.75 16 4 C -0.13 -1.61 9.79 -39.37 -0.39 -2.00 16 5 C 0.00 -0.06 9.51 -39.61 -0.38 -0.43 16 6 C -0.68 -11.10 5.98 -39.53 -0.24 -11.33 16 7 S 2.68 52.39 5.64 -107.50 -0.61 51.78 16 8 O -0.97 -19.62 16.35 -57.17 -0.93 -20.55 16 9 O -0.95 -21.55 15.83 -57.17 -0.91 -22.46 16 10 N -0.98 -20.02 3.06 -115.85 -0.35 -20.38 16 11 C 0.11 1.87 9.53 59.85 0.57 2.44 16 12 C 0.27 6.37 2.62 -69.08 -0.18 6.19 16 13 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 14 C -0.15 -3.34 8.95 37.16 0.33 -3.01 16 15 C -0.52 -13.70 8.37 -34.44 -0.29 -13.99 16 16 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -24.33 11.32 55.43 0.63 -23.71 16 19 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.01 0.10 9.51 -39.62 -0.38 -0.28 16 24 C -0.16 -2.07 9.36 -39.36 -0.37 -2.44 16 25 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.58 7.75 -51.92 -0.40 0.18 16 27 H 0.09 0.62 7.75 -51.92 -0.40 0.22 16 28 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.14 1.79 7.61 -52.49 -0.40 1.39 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.72 7.79 -51.92 -0.40 0.32 16 32 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 33 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 34 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.15 2.25 7.60 -52.49 -0.40 1.85 16 38 H 0.13 1.38 5.88 -52.48 -0.31 1.07 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -31.36 338.71 -10.13 -41.50 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.90 Total: 0.57 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -0.72 Total: -24.12 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.27 Total: -44.08 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -1.84 Total: -43.01 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 51.25 SS G_CDS: -3.03 Total: 48.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.36 -10.13 -41.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.473 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds