Wall clock time and date at job start Tue Mar 31 2020 10:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76207 * 103.00137 * 2 1 4 4 C 1.38972 * 120.08034 * 179.97438 * 3 2 1 5 5 C 1.38082 * 119.91615 * 180.02562 * 4 3 2 6 6 C 1.38302 * 120.08192 * 0.02562 * 5 4 3 7 7 S 1.76201 * 119.91926 * 179.97438 * 6 5 4 8 8 O 1.42101 * 106.39915 * 336.45750 * 7 6 5 9 9 O 1.42093 * 106.40141 * 203.54058 * 7 6 5 10 10 N 1.65593 * 107.21631 * 89.99794 * 7 6 5 11 11 C 1.46498 * 120.00388 * 269.99756 * 10 7 6 12 12 C 1.46505 * 119.99939 * 90.00236 * 10 7 6 13 13 H 1.09002 * 109.47068 * 359.97438 * 12 10 7 14 14 C 1.52997 * 109.47212 * 239.99810 * 12 10 7 15 15 C 1.50699 * 109.47262 * 119.99723 * 12 10 7 16 16 H 1.08000 * 119.99792 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 10 18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47438 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47045 * 120.00577 * 19 17 15 22 22 H 1.48501 * 109.46950 * 240.00369 * 19 17 15 23 23 C 1.38300 * 120.15980 * 0.27151 * 6 5 4 24 24 C 1.38083 * 120.08359 * 359.44946 * 23 6 5 25 25 H 1.08994 * 109.47296 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47253 * 300.00178 * 1 2 3 27 27 H 1.09003 * 109.47432 * 59.99705 * 1 2 3 28 28 H 1.08000 * 120.04219 * 0.02562 * 4 3 2 29 29 H 1.08000 * 119.95934 * 179.97438 * 5 4 3 30 30 H 1.08992 * 109.47421 * 270.00337 * 11 10 7 31 31 H 1.09007 * 109.46720 * 30.00347 * 11 10 7 32 32 H 1.09003 * 109.47218 * 150.00128 * 11 10 7 33 33 H 1.08996 * 109.47853 * 179.97438 * 14 12 10 34 34 H 1.09002 * 109.47153 * 300.00008 * 14 12 10 35 35 H 1.08998 * 109.47533 * 59.99637 * 14 12 10 36 36 H 0.96999 * 120.00073 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.96009 * 179.72946 * 23 6 5 38 38 H 1.08003 * 120.04527 * 180.27318 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5388 2.1250 0.0005 5 6 3.8456 3.4714 0.0011 6 6 2.8328 4.4131 0.0016 7 16 3.2292 6.1300 0.0030 8 8 4.5370 6.2394 0.5478 9 8 2.1017 6.8016 0.5477 10 7 3.3397 6.6087 -1.5784 11 6 4.6248 6.5352 -2.2779 12 6 2.1524 7.1060 -2.2779 13 1 1.2978 7.0872 -1.6016 14 6 1.8638 6.2162 -3.4886 15 6 2.3968 8.5193 -2.7402 16 1 3.3421 8.9991 -2.5339 17 6 1.4139 9.1996 -3.4273 18 7 0.2629 8.6152 -3.6789 19 14 1.7171 10.9513 -4.0009 20 1 3.0813 11.3757 -3.5959 21 1 1.5977 11.0156 -5.4796 22 1 0.7134 11.8550 -3.3835 23 6 1.5097 4.0106 0.0073 24 6 1.1952 2.6661 0.0009 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 4.3302 1.3902 0.0005 29 1 4.8777 3.7893 0.0019 30 1 5.1643 7.4731 -2.1465 31 1 5.2153 5.7158 -1.8678 32 1 4.4510 6.3618 -3.3399 33 1 0.9802 6.5857 -4.0089 34 1 2.7183 6.2346 -4.1650 35 1 1.6871 5.1939 -3.1544 36 1 -0.4287 9.0939 -4.1621 37 1 0.7214 4.7488 0.0121 38 1 0.1617 2.3525 0.0009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171709360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:17 Heat of formation + Delta-G solvation = -62.560577 kcal Electronic energy + Delta-G solvation = -22405.011167 eV Core-core repulsion = 19079.220729 eV Total energy + Delta-G solvation = -3325.790438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12374 -38.34286 -37.89989 -36.88310 -34.52531 -32.66919 -32.28551 -30.91301 -29.76487 -27.28845 -27.00273 -24.60615 -23.85946 -22.52178 -20.03868 -19.24217 -18.59883 -18.47653 -17.96599 -17.19098 -16.64588 -16.07610 -15.89844 -15.77452 -15.21695 -14.87793 -14.83665 -14.70358 -14.59565 -14.05294 -13.96646 -13.70146 -13.37405 -13.26022 -13.17185 -13.12915 -12.98151 -12.78763 -12.58304 -12.50359 -12.25442 -12.17610 -11.99758 -11.78285 -11.32642 -11.25936 -11.11486 -10.49794 -10.20019 -9.65530 -8.61490 -8.10866 -6.24038 -0.63428 -0.35944 0.18394 0.38686 1.30499 1.42681 1.45740 1.56210 2.00292 2.39941 2.45986 2.84429 3.17720 3.28940 3.68152 3.76902 4.10224 4.15530 4.22003 4.22943 4.31699 4.45629 4.69096 4.79777 4.83013 4.84150 4.86360 4.97895 4.98004 5.01976 5.03829 5.13399 5.19825 5.62095 5.63853 5.73457 5.87594 6.12386 6.30425 6.83378 7.44802 8.93619 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.004033 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.863645 B = 6941.235514 C = 7635.483836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.105 6.105 3 C -0.042 4.042 4 C -0.126 4.126 5 C -0.008 4.008 6 C -0.686 4.686 7 S 2.691 3.309 8 O -0.985 6.985 9 O -0.995 6.995 10 N -0.988 5.988 11 C 0.099 3.901 12 C 0.271 3.729 13 H 0.030 0.970 14 C -0.136 4.136 15 C -0.537 4.537 16 H 0.058 0.942 17 C 0.019 3.981 18 N -0.914 5.914 19 Si 0.955 3.045 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.284 1.284 23 C -0.013 4.013 24 C -0.158 4.158 25 H 0.133 0.867 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.030 0.970 36 H 0.264 0.736 37 H 0.134 0.866 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -18.324 4.486 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.140 5.860 3 C -0.156 4.156 4 C -0.150 4.150 5 C -0.029 4.029 6 C -0.778 4.778 7 S 2.786 3.214 8 O -0.976 6.976 9 O -0.986 6.986 10 N -0.828 5.828 11 C -0.046 4.046 12 C 0.167 3.833 13 H 0.048 0.952 14 C -0.196 4.196 15 C -0.576 4.576 16 H 0.076 0.924 17 C -0.181 4.181 18 N -0.553 5.553 19 Si 0.781 3.219 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.210 1.210 23 C -0.034 4.034 24 C -0.183 4.183 25 H 0.151 0.849 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.179 0.821 29 H 0.176 0.824 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.152 0.848 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.317 -18.864 5.125 19.827 hybrid contribution -1.174 1.757 -0.610 2.199 sum 2.143 -17.106 4.515 17.822 Atomic orbital electron populations 1.23918 0.91797 1.09058 1.06880 1.85511 1.09754 1.00032 1.90750 1.22371 0.97002 0.98368 0.97860 1.21156 0.95254 0.96018 1.02611 1.21087 0.98915 0.92354 0.90570 1.30851 1.01711 1.25065 1.20144 1.01555 0.72466 0.74474 0.72916 1.93479 1.39376 1.87167 1.77534 1.93509 1.53894 1.73517 1.77650 1.57285 1.17104 1.77685 1.30679 1.21430 0.82672 1.01482 0.99031 1.18477 0.81499 0.92619 0.90738 0.95249 1.21927 1.02077 0.96307 0.99252 1.21670 1.01037 0.98966 1.35951 0.92406 1.25614 0.94805 1.01724 0.95943 1.69973 1.05563 1.38316 1.41430 0.85553 0.78179 0.80120 0.78065 1.19426 1.20031 1.20983 1.20953 0.94507 0.97283 0.90692 1.21498 1.00032 0.92118 1.04602 0.84872 0.88593 0.88827 0.82054 0.82425 0.93485 0.89851 0.90241 0.91243 0.93707 0.95098 0.92624 0.84822 0.82629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.15 113.37 1.04 -0.54 16 2 S -0.11 -1.78 22.56 -56.49 -1.27 -3.05 16 3 C -0.04 -0.96 6.11 22.62 0.14 -0.83 16 4 C -0.13 -2.87 9.79 22.41 0.22 -2.65 16 5 C -0.01 -0.21 9.51 22.25 0.21 0.00 16 6 C -0.69 -22.32 5.98 22.30 0.13 -22.19 16 7 S 2.69 107.50 5.64 -56.49 -0.32 107.18 16 8 O -0.99 -39.89 16.35 -128.00 -2.09 -41.98 16 9 O -1.00 -47.40 15.83 -128.00 -2.03 -49.42 16 10 N -0.99 -40.97 3.06 -520.44 -1.59 -42.56 16 11 C 0.10 3.39 9.53 127.77 1.22 4.61 16 12 C 0.27 13.30 2.62 44.24 0.12 13.42 16 13 H 0.03 1.63 6.91 -2.39 -0.02 1.61 16 14 C -0.14 -6.12 8.95 71.98 0.64 -5.48 16 15 C -0.54 -29.00 8.37 25.60 0.21 -28.79 16 16 H 0.06 3.11 7.65 -2.91 -0.02 3.09 16 17 C 0.02 1.03 5.30 84.65 0.45 1.47 16 18 N -0.91 -50.86 11.32 21.45 0.24 -50.62 16 19 Si 0.96 43.12 29.54 68.60 2.03 45.14 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 C -0.01 -0.40 9.51 22.25 0.21 -0.19 16 24 C -0.16 -3.89 9.36 22.41 0.21 -3.68 16 25 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.10 0.92 7.75 -2.39 -0.02 0.90 16 27 H 0.09 0.98 7.75 -2.39 -0.02 0.96 16 28 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.16 3.63 7.61 -2.91 -0.02 3.60 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 2.26 7.79 -2.38 -0.02 2.24 16 32 H 0.08 2.60 6.43 -2.39 -0.02 2.59 16 33 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16 34 H 0.04 1.87 6.66 -2.39 -0.02 1.86 16 35 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 37 H 0.13 4.35 7.60 -2.91 -0.02 4.33 16 38 H 0.16 2.90 5.88 -2.91 -0.02 2.89 16 Total: -1.00 -68.46 338.71 0.83 -67.62 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.07 Total: 12.51 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 4.80 Total: -44.82 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -1.35 Total: -93.18 kcal Atomic # 8 Polarization: -87.29 SS G_CDS: -4.12 Total: -91.41 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 105.72 SS G_CDS: -1.59 Total: 104.13 kcal Total: -68.46 0.83 -67.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.064 kcal (2) G-P(sol) polarization free energy of solvation -68.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds