Wall clock time and date at job start Tue Mar 31 2020 10:50:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81395 * 1
3 3 C 1.76207 * 103.00137 * 2 1
4 4 C 1.38972 * 120.08034 * 179.97438 * 3 2 1
5 5 C 1.38082 * 119.91615 * 180.02562 * 4 3 2
6 6 C 1.38302 * 120.08192 * 0.02562 * 5 4 3
7 7 S 1.76201 * 119.91926 * 179.97438 * 6 5 4
8 8 O 1.42101 * 106.39915 * 336.45750 * 7 6 5
9 9 O 1.42093 * 106.40141 * 203.54058 * 7 6 5
10 10 N 1.65593 * 107.21631 * 89.99794 * 7 6 5
11 11 C 1.46498 * 120.00388 * 269.99756 * 10 7 6
12 12 C 1.46505 * 119.99939 * 90.00236 * 10 7 6
13 13 H 1.09002 * 109.47068 * 359.97438 * 12 10 7
14 14 C 1.52997 * 109.47212 * 239.99810 * 12 10 7
15 15 C 1.50699 * 109.47262 * 119.99723 * 12 10 7
16 16 H 1.08000 * 119.99792 * 0.02562 * 15 12 10
17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 10
18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12
19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12
20 20 H 1.48501 * 109.47438 * 0.02562 * 19 17 15
21 21 H 1.48491 * 109.47045 * 120.00577 * 19 17 15
22 22 H 1.48501 * 109.46950 * 240.00369 * 19 17 15
23 23 C 1.38300 * 120.15980 * 0.27151 * 6 5 4
24 24 C 1.38083 * 120.08359 * 359.44946 * 23 6 5
25 25 H 1.08994 * 109.47296 * 179.97438 * 1 2 3
26 26 H 1.09007 * 109.47253 * 300.00178 * 1 2 3
27 27 H 1.09003 * 109.47432 * 59.99705 * 1 2 3
28 28 H 1.08000 * 120.04219 * 0.02562 * 4 3 2
29 29 H 1.08000 * 119.95934 * 179.97438 * 5 4 3
30 30 H 1.08992 * 109.47421 * 270.00337 * 11 10 7
31 31 H 1.09007 * 109.46720 * 30.00347 * 11 10 7
32 32 H 1.09003 * 109.47218 * 150.00128 * 11 10 7
33 33 H 1.08996 * 109.47853 * 179.97438 * 14 12 10
34 34 H 1.09002 * 109.47153 * 300.00008 * 14 12 10
35 35 H 1.08998 * 109.47533 * 59.99637 * 14 12 10
36 36 H 0.96999 * 120.00073 * 179.97438 * 18 17 15
37 37 H 1.08001 * 119.96009 * 179.72946 * 23 6 5
38 38 H 1.08003 * 120.04527 * 180.27318 * 24 23 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2104 1.7169 0.0000
4 6 3.5388 2.1250 0.0005
5 6 3.8456 3.4714 0.0011
6 6 2.8328 4.4131 0.0016
7 16 3.2292 6.1300 0.0030
8 8 4.5370 6.2394 0.5478
9 8 2.1017 6.8016 0.5477
10 7 3.3397 6.6087 -1.5784
11 6 4.6248 6.5352 -2.2779
12 6 2.1524 7.1060 -2.2779
13 1 1.2978 7.0872 -1.6016
14 6 1.8638 6.2162 -3.4886
15 6 2.3968 8.5193 -2.7402
16 1 3.3421 8.9991 -2.5339
17 6 1.4139 9.1996 -3.4273
18 7 0.2629 8.6152 -3.6789
19 14 1.7171 10.9513 -4.0009
20 1 3.0813 11.3757 -3.5959
21 1 1.5977 11.0156 -5.4796
22 1 0.7134 11.8550 -3.3835
23 6 1.5097 4.0106 0.0073
24 6 1.1952 2.6661 0.0009
25 1 -0.3633 -1.0276 -0.0005
26 1 -0.3634 0.5139 0.8900
27 1 -0.3634 0.5139 -0.8900
28 1 4.3302 1.3902 0.0005
29 1 4.8777 3.7893 0.0019
30 1 5.1643 7.4731 -2.1465
31 1 5.2153 5.7158 -1.8678
32 1 4.4510 6.3618 -3.3399
33 1 0.9802 6.5857 -4.0089
34 1 2.7183 6.2346 -4.1650
35 1 1.6871 5.1939 -3.1544
36 1 -0.4287 9.0939 -4.1621
37 1 0.7214 4.7488 0.0121
38 1 0.1617 2.3525 0.0009
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000171709360.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:50:17
Heat of formation + Delta-G solvation = -62.560577 kcal
Electronic energy + Delta-G solvation = -22405.011167 eV
Core-core repulsion = 19079.220729 eV
Total energy + Delta-G solvation = -3325.790438 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 315.075 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.12374 -38.34286 -37.89989 -36.88310 -34.52531 -32.66919 -32.28551 -30.91301
-29.76487 -27.28845 -27.00273 -24.60615 -23.85946 -22.52178 -20.03868 -19.24217
-18.59883 -18.47653 -17.96599 -17.19098 -16.64588 -16.07610 -15.89844 -15.77452
-15.21695 -14.87793 -14.83665 -14.70358 -14.59565 -14.05294 -13.96646 -13.70146
-13.37405 -13.26022 -13.17185 -13.12915 -12.98151 -12.78763 -12.58304 -12.50359
-12.25442 -12.17610 -11.99758 -11.78285 -11.32642 -11.25936 -11.11486 -10.49794
-10.20019 -9.65530 -8.61490 -8.10866 -6.24038 -0.63428 -0.35944 0.18394
0.38686 1.30499 1.42681 1.45740 1.56210 2.00292 2.39941 2.45986
2.84429 3.17720 3.28940 3.68152 3.76902 4.10224 4.15530 4.22003
4.22943 4.31699 4.45629 4.69096 4.79777 4.83013 4.84150 4.86360
4.97895 4.98004 5.01976 5.03829 5.13399 5.19825 5.62095 5.63853
5.73457 5.87594 6.12386 6.30425 6.83378 7.44802 8.93619
Molecular weight = 315.07amu
Principal moments of inertia in cm(-1)
A = 0.020156 B = 0.004033 C = 0.003666
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1388.863645 B = 6941.235514 C = 7635.483836
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 S -0.105 6.105
3 C -0.042 4.042
4 C -0.126 4.126
5 C -0.008 4.008
6 C -0.686 4.686
7 S 2.691 3.309
8 O -0.985 6.985
9 O -0.995 6.995
10 N -0.988 5.988
11 C 0.099 3.901
12 C 0.271 3.729
13 H 0.030 0.970
14 C -0.136 4.136
15 C -0.537 4.537
16 H 0.058 0.942
17 C 0.019 3.981
18 N -0.914 5.914
19 Si 0.955 3.045
20 H -0.270 1.270
21 H -0.275 1.275
22 H -0.284 1.284
23 C -0.013 4.013
24 C -0.158 4.158
25 H 0.133 0.867
26 H 0.095 0.905
27 H 0.093 0.907
28 H 0.162 0.838
29 H 0.158 0.842
30 H 0.046 0.954
31 H 0.083 0.917
32 H 0.079 0.921
33 H 0.069 0.931
34 H 0.044 0.956
35 H 0.030 0.970
36 H 0.264 0.736
37 H 0.134 0.866
38 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.720 -18.324 4.486 19.060
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.317 4.317
2 S 0.140 5.860
3 C -0.156 4.156
4 C -0.150 4.150
5 C -0.029 4.029
6 C -0.778 4.778
7 S 2.786 3.214
8 O -0.976 6.976
9 O -0.986 6.986
10 N -0.828 5.828
11 C -0.046 4.046
12 C 0.167 3.833
13 H 0.048 0.952
14 C -0.196 4.196
15 C -0.576 4.576
16 H 0.076 0.924
17 C -0.181 4.181
18 N -0.553 5.553
19 Si 0.781 3.219
20 H -0.194 1.194
21 H -0.200 1.200
22 H -0.210 1.210
23 C -0.034 4.034
24 C -0.183 4.183
25 H 0.151 0.849
26 H 0.114 0.886
27 H 0.112 0.888
28 H 0.179 0.821
29 H 0.176 0.824
30 H 0.065 0.935
31 H 0.101 0.899
32 H 0.098 0.902
33 H 0.088 0.912
34 H 0.063 0.937
35 H 0.049 0.951
36 H 0.074 0.926
37 H 0.152 0.848
38 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 3.317 -18.864 5.125 19.827
hybrid contribution -1.174 1.757 -0.610 2.199
sum 2.143 -17.106 4.515 17.822
Atomic orbital electron populations
1.23918 0.91797 1.09058 1.06880 1.85511 1.09754 1.00032 1.90750
1.22371 0.97002 0.98368 0.97860 1.21156 0.95254 0.96018 1.02611
1.21087 0.98915 0.92354 0.90570 1.30851 1.01711 1.25065 1.20144
1.01555 0.72466 0.74474 0.72916 1.93479 1.39376 1.87167 1.77534
1.93509 1.53894 1.73517 1.77650 1.57285 1.17104 1.77685 1.30679
1.21430 0.82672 1.01482 0.99031 1.18477 0.81499 0.92619 0.90738
0.95249 1.21927 1.02077 0.96307 0.99252 1.21670 1.01037 0.98966
1.35951 0.92406 1.25614 0.94805 1.01724 0.95943 1.69973 1.05563
1.38316 1.41430 0.85553 0.78179 0.80120 0.78065 1.19426 1.20031
1.20983 1.20953 0.94507 0.97283 0.90692 1.21498 1.00032 0.92118
1.04602 0.84872 0.88593 0.88827 0.82054 0.82425 0.93485 0.89851
0.90241 0.91243 0.93707 0.95098 0.92624 0.84822 0.82629
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.57 9.15 113.37 1.04 -0.54 16
2 S -0.11 -1.78 22.56 -56.49 -1.27 -3.05 16
3 C -0.04 -0.96 6.11 22.62 0.14 -0.83 16
4 C -0.13 -2.87 9.79 22.41 0.22 -2.65 16
5 C -0.01 -0.21 9.51 22.25 0.21 0.00 16
6 C -0.69 -22.32 5.98 22.30 0.13 -22.19 16
7 S 2.69 107.50 5.64 -56.49 -0.32 107.18 16
8 O -0.99 -39.89 16.35 -128.00 -2.09 -41.98 16
9 O -1.00 -47.40 15.83 -128.00 -2.03 -49.42 16
10 N -0.99 -40.97 3.06 -520.44 -1.59 -42.56 16
11 C 0.10 3.39 9.53 127.77 1.22 4.61 16
12 C 0.27 13.30 2.62 44.24 0.12 13.42 16
13 H 0.03 1.63 6.91 -2.39 -0.02 1.61 16
14 C -0.14 -6.12 8.95 71.98 0.64 -5.48 16
15 C -0.54 -29.00 8.37 25.60 0.21 -28.79 16
16 H 0.06 3.11 7.65 -2.91 -0.02 3.09 16
17 C 0.02 1.03 5.30 84.65 0.45 1.47 16
18 N -0.91 -50.86 11.32 21.45 0.24 -50.62 16
19 Si 0.96 43.12 29.54 68.60 2.03 45.14 16
20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
21 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16
22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
23 C -0.01 -0.40 9.51 22.25 0.21 -0.19 16
24 C -0.16 -3.89 9.36 22.41 0.21 -3.68 16
25 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16
26 H 0.10 0.92 7.75 -2.39 -0.02 0.90 16
27 H 0.09 0.98 7.75 -2.39 -0.02 0.96 16
28 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16
29 H 0.16 3.63 7.61 -2.91 -0.02 3.60 16
30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16
31 H 0.08 2.26 7.79 -2.38 -0.02 2.24 16
32 H 0.08 2.60 6.43 -2.39 -0.02 2.59 16
33 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16
34 H 0.04 1.87 6.66 -2.39 -0.02 1.86 16
35 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16
36 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16
37 H 0.13 4.35 7.60 -2.91 -0.02 4.33 16
38 H 0.16 2.90 5.88 -2.91 -0.02 2.89 16
Total: -1.00 -68.46 338.71 0.83 -67.62
By element:
Atomic # 1 Polarization: 11.44 SS G_CDS: 1.07 Total: 12.51 kcal
Atomic # 6 Polarization: -49.63 SS G_CDS: 4.80 Total: -44.82 kcal
Atomic # 7 Polarization: -91.83 SS G_CDS: -1.35 Total: -93.18 kcal
Atomic # 8 Polarization: -87.29 SS G_CDS: -4.12 Total: -91.41 kcal
Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal
Atomic # 16 Polarization: 105.72 SS G_CDS: -1.59 Total: 104.13 kcal
Total: -68.46 0.83 -67.62 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000171709360.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.064 kcal
(2) G-P(sol) polarization free energy of solvation -68.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.393 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.624 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds