Wall clock time and date at job start Tue Mar 31 2020 11:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76202 * 102.99757 * 2 1 4 4 C 1.38976 * 120.08195 * 180.02562 * 3 2 1 5 5 C 1.38081 * 119.92183 * 180.27887 * 4 3 2 6 6 C 1.38309 * 120.07447 * 359.49044 * 5 4 3 7 7 S 1.76202 * 119.91591 * 180.28003 * 6 5 4 8 8 O 1.42100 * 106.40375 * 23.77189 * 7 6 5 9 9 O 1.42099 * 106.40309 * 156.69112 * 7 6 5 10 10 N 1.65599 * 107.21893 * 270.22840 * 7 6 5 11 11 C 1.46505 * 119.99663 * 65.00038 * 10 7 6 12 12 C 1.53003 * 109.47000 * 165.00434 * 11 10 7 13 13 C 1.52999 * 109.46998 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.46821 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99831 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00042 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99713 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47188 * 90.00224 * 18 16 14 20 20 H 1.48505 * 109.47161 * 209.99746 * 18 16 14 21 21 H 1.48495 * 109.47473 * 330.00131 * 18 16 14 22 22 C 1.38302 * 120.16375 * 0.50947 * 6 5 4 23 23 C 1.38078 * 120.08132 * 359.74542 * 22 6 5 24 24 H 1.09008 * 109.46874 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47310 * 299.99768 * 1 2 3 26 26 H 1.08997 * 109.47456 * 60.00054 * 1 2 3 27 27 H 1.08002 * 120.03591 * 359.97438 * 4 3 2 28 28 H 1.07990 * 119.96126 * 179.74836 * 5 4 3 29 29 H 0.96994 * 120.00518 * 245.00617 * 10 7 6 30 30 H 1.09003 * 109.47028 * 284.99498 * 11 10 7 31 31 H 1.08999 * 109.47148 * 45.00173 * 11 10 7 32 32 H 1.09007 * 109.46559 * 299.99894 * 12 11 10 33 33 H 1.08999 * 109.47383 * 59.99883 * 12 11 10 34 34 H 1.08992 * 109.47080 * 299.99584 * 13 12 11 35 35 H 1.09005 * 109.47104 * 60.00225 * 13 12 11 36 36 H 0.97000 * 119.99732 * 179.97438 * 17 16 14 37 37 H 1.07999 * 119.95915 * 179.77178 * 22 6 5 38 38 H 1.07994 * 120.04394 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5387 2.1252 -0.0005 5 6 3.8455 3.4714 0.0053 6 6 2.8326 4.4132 0.0010 7 16 3.2289 6.1301 0.0010 8 8 4.5366 6.2401 -0.5440 9 8 2.1012 6.8022 -0.5428 10 7 3.3398 6.6076 1.5828 11 6 4.3942 6.0611 2.4406 12 6 4.5164 6.9142 3.7049 13 6 5.6171 6.3431 4.6011 14 6 5.7378 7.1838 5.8460 15 1 5.0936 8.0395 5.9843 16 6 6.6700 6.8599 6.8089 17 7 6.7750 7.5932 7.8955 18 14 7.7837 5.3793 6.5699 19 1 9.0222 5.7999 5.8668 20 1 8.1364 4.8064 7.8938 21 1 7.0780 4.3547 5.7592 22 6 1.5095 4.0106 0.0015 23 6 1.1951 2.6661 0.0010 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 4.3302 1.3903 -0.0005 28 1 4.8776 3.7894 0.0090 29 1 2.7067 7.2490 1.9413 30 1 4.1436 5.0367 2.7165 31 1 5.3420 6.0710 1.9025 32 1 4.7669 7.9386 3.4290 33 1 3.5685 6.9042 4.2430 34 1 5.3662 5.3189 4.8768 35 1 6.5651 6.3528 4.0632 36 1 7.4306 7.3650 8.5730 37 1 0.7211 4.7488 0.0019 38 1 0.1617 2.3524 0.0018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171713833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:55 Heat of formation + Delta-G solvation = -60.855460 kcal Electronic energy + Delta-G solvation = -21185.487066 eV Core-core repulsion = 17859.770567 eV Total energy + Delta-G solvation = -3325.716499 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.40415 -37.30706 -36.12129 -35.88969 -33.23555 -31.97167 -31.57146 -31.19061 -29.38177 -26.83458 -23.86317 -23.20946 -22.79559 -20.54167 -19.47391 -18.54492 -17.74815 -17.26451 -16.80805 -16.23957 -15.58263 -15.30550 -15.10806 -14.74731 -14.53564 -14.40229 -14.11560 -14.00475 -13.45524 -13.41249 -12.92285 -12.69718 -12.46893 -12.34732 -12.13526 -12.06572 -11.78270 -11.73784 -11.19000 -11.15010 -10.95097 -10.71089 -10.53946 -10.12282 -9.86750 -9.72901 -9.47283 -9.35714 -9.23087 -8.56807 -8.03539 -6.07172 -4.05918 0.19025 0.47212 0.91544 0.94749 1.81960 2.83274 3.17640 3.29518 3.37066 3.39244 3.70128 4.13693 4.42629 4.43944 4.46562 4.51345 4.52384 4.84785 5.01890 5.12866 5.18676 5.21450 5.26710 5.50465 5.52772 5.56639 5.69344 5.72410 5.78918 5.91883 6.36352 6.39886 6.55738 6.75393 7.03342 7.21315 7.34531 7.74735 8.49747 8.97320 9.54820 11.06213 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.003405 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.754780 B = 8222.124921 C = 9695.644327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.101 6.101 3 C -0.035 4.035 4 C -0.123 4.123 5 C 0.002 3.998 6 C -0.682 4.682 7 S 2.696 3.304 8 O -0.956 6.956 9 O -0.965 6.965 10 N -1.112 6.112 11 C 0.109 3.891 12 C -0.108 4.108 13 C -0.014 4.014 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.265 1.265 22 C 0.003 3.997 23 C -0.160 4.160 24 H 0.111 0.889 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.139 0.861 28 H 0.148 0.852 29 H 0.419 0.581 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.018 0.982 35 H 0.016 0.984 36 H 0.263 0.737 37 H 0.144 0.856 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.269 -14.343 -18.282 26.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.144 5.856 3 C -0.149 4.149 4 C -0.147 4.147 5 C -0.020 4.020 6 C -0.771 4.771 7 S 2.785 3.215 8 O -0.946 6.946 9 O -0.955 6.955 10 N -0.874 5.874 11 C -0.016 4.016 12 C -0.147 4.147 13 C -0.052 4.052 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.018 4.018 23 C -0.184 4.184 24 H 0.130 0.870 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.156 0.844 28 H 0.166 0.834 29 H 0.254 0.746 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.162 0.838 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.291 -15.070 -18.923 27.134 hybrid contribution -0.672 -0.150 0.581 0.901 sum -12.964 -15.220 -18.342 27.131 Atomic orbital electron populations 1.23765 0.94401 1.07544 1.06126 1.85682 1.06801 1.02148 1.90998 1.22130 0.97051 0.97037 0.98635 1.20898 0.94460 0.96374 1.02983 1.20944 0.99026 0.92024 0.89979 1.31077 1.00733 1.26298 1.18985 1.01800 0.73679 0.73376 0.72673 1.93593 1.38841 1.85640 1.76489 1.93573 1.52735 1.72528 1.76709 1.55468 1.43100 1.57850 1.30939 1.21634 0.89081 0.97755 0.93129 1.21670 1.01116 0.98924 0.92997 1.19555 0.93601 0.96819 0.95234 1.21105 1.19928 1.13340 1.01634 0.90966 1.25037 0.97011 0.96490 0.94981 1.69912 1.35827 1.39340 1.09116 0.86778 0.81355 0.83648 0.77502 1.20180 1.21409 1.18962 1.20807 0.94631 0.96151 0.90188 1.21256 0.98543 0.93128 1.05502 0.87005 0.89270 0.89386 0.84363 0.83403 0.74594 0.92113 0.90430 0.91702 0.91949 0.96359 0.96617 0.92692 0.83840 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.15 101.05 0.92 0.21 16 2 S -0.10 -0.82 22.57 -107.50 -2.43 -3.24 16 3 C -0.03 -0.34 6.11 -39.03 -0.24 -0.58 16 4 C -0.12 -1.26 9.79 -39.37 -0.39 -1.65 16 5 C 0.00 0.02 9.51 -39.61 -0.38 -0.36 16 6 C -0.68 -7.83 5.95 -39.53 -0.24 -8.06 16 7 S 2.70 34.42 5.73 -107.50 -0.62 33.81 16 8 O -0.96 -14.81 16.75 -57.17 -0.96 -15.77 16 9 O -0.97 -13.92 17.27 -57.17 -0.99 -14.91 16 10 N -1.11 -13.76 6.00 -10.61 -0.06 -13.83 16 11 C 0.11 1.58 6.22 -4.04 -0.03 1.56 16 12 C -0.11 -1.94 5.29 -26.73 -0.14 -2.08 16 13 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 14 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 15 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 18 Si 0.88 21.27 27.47 -169.99 -4.67 16.61 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 22 C 0.00 0.04 9.51 -39.62 -0.38 -0.34 16 23 C -0.16 -1.48 9.36 -39.36 -0.37 -1.85 16 24 H 0.11 0.36 8.14 -51.92 -0.42 -0.06 16 25 H 0.09 0.39 7.75 -51.93 -0.40 -0.01 16 26 H 0.09 0.35 7.75 -51.93 -0.40 -0.05 16 27 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.15 1.47 7.61 -52.49 -0.40 1.07 16 29 H 0.42 4.50 8.65 -34.47 -0.30 4.21 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.11 7.75 -51.93 -0.40 0.71 16 32 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 35 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.14 1.24 7.61 -52.49 -0.40 0.84 16 38 H 0.13 0.87 5.88 -52.49 -0.31 0.57 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -34.62 345.29 -10.59 -45.21 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.08 Total: 0.32 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -1.77 Total: -26.62 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.71 Total: -40.61 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.95 Total: -30.68 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: 33.61 SS G_CDS: -3.04 Total: 30.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.62 -10.59 -45.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171713833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.641 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds