Wall clock time and date at job start Tue Mar 31 2020 11:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76202 * 102.99757 * 2 1 4 4 C 1.38976 * 120.08195 * 180.02562 * 3 2 1 5 5 C 1.38081 * 119.92183 * 180.27887 * 4 3 2 6 6 C 1.38309 * 120.07447 * 359.49044 * 5 4 3 7 7 S 1.76202 * 119.91591 * 180.28003 * 6 5 4 8 8 O 1.42100 * 106.40375 * 23.77189 * 7 6 5 9 9 O 1.42099 * 106.40309 * 156.69112 * 7 6 5 10 10 N 1.65599 * 107.21893 * 270.22840 * 7 6 5 11 11 C 1.46505 * 119.99663 * 65.00038 * 10 7 6 12 12 C 1.53003 * 109.47000 * 165.00434 * 11 10 7 13 13 C 1.52999 * 109.46998 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.46821 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99831 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00042 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99713 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47188 * 90.00224 * 18 16 14 20 20 H 1.48505 * 109.47161 * 209.99746 * 18 16 14 21 21 H 1.48495 * 109.47473 * 330.00131 * 18 16 14 22 22 C 1.38302 * 120.16375 * 0.50947 * 6 5 4 23 23 C 1.38078 * 120.08132 * 359.74542 * 22 6 5 24 24 H 1.09008 * 109.46874 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47310 * 299.99768 * 1 2 3 26 26 H 1.08997 * 109.47456 * 60.00054 * 1 2 3 27 27 H 1.08002 * 120.03591 * 359.97438 * 4 3 2 28 28 H 1.07990 * 119.96126 * 179.74836 * 5 4 3 29 29 H 0.96994 * 120.00518 * 245.00617 * 10 7 6 30 30 H 1.09003 * 109.47028 * 284.99498 * 11 10 7 31 31 H 1.08999 * 109.47148 * 45.00173 * 11 10 7 32 32 H 1.09007 * 109.46559 * 299.99894 * 12 11 10 33 33 H 1.08999 * 109.47383 * 59.99883 * 12 11 10 34 34 H 1.08992 * 109.47080 * 299.99584 * 13 12 11 35 35 H 1.09005 * 109.47104 * 60.00225 * 13 12 11 36 36 H 0.97000 * 119.99732 * 179.97438 * 17 16 14 37 37 H 1.07999 * 119.95915 * 179.77178 * 22 6 5 38 38 H 1.07994 * 120.04394 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5387 2.1252 -0.0005 5 6 3.8455 3.4714 0.0053 6 6 2.8326 4.4132 0.0010 7 16 3.2289 6.1301 0.0010 8 8 4.5366 6.2401 -0.5440 9 8 2.1012 6.8022 -0.5428 10 7 3.3398 6.6076 1.5828 11 6 4.3942 6.0611 2.4406 12 6 4.5164 6.9142 3.7049 13 6 5.6171 6.3431 4.6011 14 6 5.7378 7.1838 5.8460 15 1 5.0936 8.0395 5.9843 16 6 6.6700 6.8599 6.8089 17 7 6.7750 7.5932 7.8955 18 14 7.7837 5.3793 6.5699 19 1 9.0222 5.7999 5.8668 20 1 8.1364 4.8064 7.8938 21 1 7.0780 4.3547 5.7592 22 6 1.5095 4.0106 0.0015 23 6 1.1951 2.6661 0.0010 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 4.3302 1.3903 -0.0005 28 1 4.8776 3.7894 0.0090 29 1 2.7067 7.2490 1.9413 30 1 4.1436 5.0367 2.7165 31 1 5.3420 6.0710 1.9025 32 1 4.7669 7.9386 3.4290 33 1 3.5685 6.9042 4.2430 34 1 5.3662 5.3189 4.8768 35 1 6.5651 6.3528 4.0632 36 1 7.4306 7.3650 8.5730 37 1 0.7211 4.7488 0.0019 38 1 0.1617 2.3524 0.0018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171713833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:54 Heat of formation + Delta-G solvation = -84.950008 kcal Electronic energy + Delta-G solvation = -21186.531884 eV Core-core repulsion = 17859.770567 eV Total energy + Delta-G solvation = -3326.761317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.13925 -38.40570 -37.40638 -36.99404 -35.10540 -32.95896 -32.68430 -32.30060 -29.77917 -28.53075 -24.65229 -24.48141 -23.86233 -22.11609 -20.51401 -19.34061 -18.96701 -18.62764 -18.12767 -17.28808 -16.54316 -16.24274 -16.15272 -15.83607 -15.76648 -15.46859 -14.87800 -14.78929 -14.73758 -14.10971 -14.07268 -13.96107 -13.78856 -13.33741 -13.26377 -13.22520 -13.16952 -12.76290 -12.68915 -12.52053 -12.02282 -11.80822 -11.62779 -11.51311 -11.32280 -11.28792 -11.25451 -10.73029 -10.43927 -10.20626 -8.65792 -8.26228 -6.30399 -0.71260 -0.40709 0.17928 0.36907 1.30839 1.40727 1.41621 1.53400 1.92202 2.32086 2.39744 2.73405 3.09942 3.25155 3.66828 3.76727 4.02728 4.14712 4.20927 4.21607 4.26579 4.29080 4.44387 4.45224 4.67321 4.78388 4.83285 4.84586 4.94222 4.96768 5.00512 5.09209 5.13246 5.55333 5.62832 5.62950 5.69848 6.06294 6.31783 6.78563 7.34362 8.90630 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.003405 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.754780 B = 8222.124921 C = 9695.644327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.120 6.120 3 C -0.041 4.041 4 C -0.134 4.134 5 C -0.011 4.011 6 C -0.690 4.690 7 S 2.715 3.285 8 O -0.986 6.986 9 O -0.983 6.983 10 N -1.109 6.109 11 C 0.117 3.883 12 C -0.102 4.102 13 C -0.015 4.015 14 C -0.532 4.532 15 H 0.032 0.968 16 C 0.000 4.000 17 N -0.955 5.955 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.239 1.239 22 C -0.005 4.005 23 C -0.161 4.161 24 H 0.129 0.871 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.426 0.574 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.024 0.976 36 H 0.265 0.735 37 H 0.157 0.843 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.144 -16.997 -19.611 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.125 5.875 3 C -0.154 4.154 4 C -0.158 4.158 5 C -0.032 4.032 6 C -0.782 4.782 7 S 2.807 3.193 8 O -0.976 6.976 9 O -0.974 6.974 10 N -0.870 5.870 11 C -0.009 4.009 12 C -0.142 4.142 13 C -0.053 4.053 14 C -0.570 4.570 15 H 0.050 0.950 16 C -0.196 4.196 17 N -0.596 5.596 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.213 1.213 21 H -0.162 1.162 22 C -0.026 4.026 23 C -0.185 4.185 24 H 0.147 0.853 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.263 0.737 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.175 0.825 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.183 -17.698 -20.271 29.966 hybrid contribution -0.532 0.657 0.998 1.308 sum -13.715 -17.041 -19.273 29.153 Atomic orbital electron populations 1.23912 0.91291 1.09033 1.07070 1.85782 1.10282 1.00937 1.90503 1.22388 0.97124 0.98194 0.97734 1.21123 0.95319 0.96339 1.03030 1.21099 0.99282 0.92462 0.90398 1.30749 1.01618 1.24809 1.20993 1.00966 0.72587 0.73651 0.72117 1.93550 1.40386 1.86480 1.77169 1.93543 1.53140 1.73627 1.77052 1.55280 1.42898 1.58344 1.30524 1.21449 0.89960 0.97865 0.91627 1.21503 0.99644 0.98980 0.94040 1.19531 0.95618 0.96452 0.93731 1.21526 1.18865 1.12787 1.03845 0.94965 1.26061 0.98974 1.00019 0.94538 1.70078 1.37217 1.41802 1.10474 0.85662 0.79256 0.79945 0.77837 1.19320 1.21339 1.16168 1.21077 0.94458 0.97156 0.89941 1.21582 0.99853 0.92540 1.04568 0.85259 0.88462 0.88264 0.83164 0.82934 0.73731 0.90240 0.90162 0.92506 0.91766 0.95261 0.95814 0.92605 0.82517 0.82278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.15 113.37 1.04 0.13 16 2 S -0.12 -1.67 22.57 -56.49 -1.27 -2.94 16 3 C -0.04 -0.71 6.11 22.63 0.14 -0.57 16 4 C -0.13 -2.52 9.79 22.41 0.22 -2.30 16 5 C -0.01 -0.23 9.51 22.25 0.21 -0.02 16 6 C -0.69 -14.81 5.95 22.30 0.13 -14.68 16 7 S 2.71 66.69 5.73 -56.49 -0.32 66.37 16 8 O -0.99 -29.96 16.75 -128.00 -2.14 -32.10 16 9 O -0.98 -27.49 17.27 -128.00 -2.21 -29.70 16 10 N -1.11 -25.99 6.00 -187.47 -1.12 -27.11 16 11 C 0.12 3.16 6.22 86.38 0.54 3.70 16 12 C -0.10 -3.59 5.29 30.59 0.16 -3.43 16 13 C -0.02 -0.66 4.04 29.85 0.12 -0.54 16 14 C -0.53 -30.00 9.66 25.60 0.25 -29.75 16 15 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 16 C 0.00 0.02 5.47 84.65 0.46 0.49 16 17 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 18 Si 0.95 43.22 27.47 68.60 1.88 45.10 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 22 C 0.00 -0.09 9.51 22.25 0.21 0.12 16 23 C -0.16 -2.56 9.36 22.41 0.21 -2.35 16 24 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.10 0.50 7.75 -2.39 -0.02 0.48 16 26 H 0.10 0.44 7.75 -2.39 -0.02 0.42 16 27 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.15 2.87 7.61 -2.92 -0.02 2.85 16 29 H 0.43 8.69 8.65 -96.75 -0.84 7.85 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 2.15 7.75 -2.39 -0.02 2.14 16 32 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 35 H 0.02 1.00 7.57 -2.38 -0.02 0.98 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.16 2.37 7.61 -2.91 -0.02 2.35 16 38 H 0.16 1.55 5.88 -2.91 -0.02 1.53 16 Total: -1.00 -75.21 345.29 -1.02 -76.24 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.18 Total: 12.81 kcal Atomic # 6 Polarization: -52.89 SS G_CDS: 3.69 Total: -49.20 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -0.83 Total: -86.56 kcal Atomic # 8 Polarization: -57.45 SS G_CDS: -4.36 Total: -61.81 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.10 kcal Atomic # 16 Polarization: 65.02 SS G_CDS: -1.60 Total: 63.43 kcal Total: -75.21 -1.02 -76.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171713833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.715 kcal (2) G-P(sol) polarization free energy of solvation -75.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds