Wall clock time and date at job start Tue Mar 31 2020 10:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46985 * 2 1 4 4 C 1.50700 * 109.47298 * 239.99502 * 2 1 3 5 5 H 1.07994 * 120.00100 * 240.00301 * 4 2 1 6 6 C 1.37876 * 119.99888 * 60.00368 * 4 2 1 7 7 N 1.31515 * 120.00033 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99915 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47176 * 60.00041 * 8 6 4 10 10 H 1.48501 * 109.46948 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47251 * 299.99756 * 8 6 4 12 12 N 1.46499 * 109.47014 * 119.99544 * 2 1 3 13 13 C 1.34778 * 119.99886 * 275.00325 * 12 2 1 14 14 O 1.21271 * 120.00539 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99967 * 179.97438 * 13 12 2 16 16 H 1.09003 * 109.47087 * 305.00126 * 15 13 12 17 17 C 1.53003 * 109.46961 * 64.99678 * 15 13 12 18 18 O 1.42900 * 109.47467 * 184.99588 * 15 13 12 19 19 C 1.35963 * 116.99884 * 154.99894 * 18 15 13 20 20 C 1.38690 * 120.03845 * 5.49007 * 19 18 15 21 21 C 1.38155 * 119.98301 * 180.27260 * 20 19 18 22 22 C 1.38475 * 120.05095 * 359.45230 * 21 20 19 23 23 F 1.35098 * 119.96573 * 180.27622 * 22 21 20 24 24 C 1.38430 * 120.06549 * 0.29656 * 22 21 20 25 25 C 1.38256 * 120.02382 * 359.97438 * 24 22 21 26 26 Cl 1.73597 * 120.02976 * 179.97438 * 25 24 22 27 27 H 1.09007 * 109.46684 * 60.00113 * 1 2 3 28 28 H 1.08995 * 109.47107 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46868 * 300.00728 * 1 2 3 30 30 H 0.97000 * 120.00204 * 180.02562 * 7 6 4 31 31 H 0.97001 * 120.00162 * 94.99707 * 12 2 1 32 32 H 1.08996 * 109.47206 * 300.00070 * 17 15 13 33 33 H 1.08994 * 109.47114 * 60.00285 * 17 15 13 34 34 H 1.09002 * 109.46951 * 179.97438 * 17 15 13 35 35 H 1.07995 * 120.00444 * 0.02775 * 20 19 18 36 36 H 1.07999 * 119.97242 * 179.72760 * 21 20 19 37 37 H 1.07997 * 119.98714 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 1.8259 -2.5205 -4.0075 10 1 1.8262 -0.4209 -5.2203 11 1 3.8065 -1.1212 -4.0080 12 7 2.0184 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7285 3.5879 16 1 2.0273 -1.6029 3.7814 17 6 4.0966 -1.1709 3.3667 18 8 2.5871 0.1571 4.7076 19 6 2.4895 -0.4108 5.9391 20 6 2.5684 -1.7886 6.0765 21 6 2.4634 -2.3649 7.3277 22 6 2.2908 -1.5671 8.4463 23 9 2.1939 -2.1321 9.6696 24 6 2.2170 -0.1913 8.3122 25 6 2.3161 0.3881 7.0608 26 17 2.2229 2.1134 6.8924 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.7083 1.1607 -3.4845 31 1 2.2490 -1.6317 1.1528 32 1 4.1437 -1.8464 2.5126 33 1 4.7181 -0.2966 3.1731 34 1 4.4597 -1.6843 4.2570 35 1 2.7078 -2.4111 5.2051 36 1 2.5204 -3.4381 7.4339 37 1 2.0820 0.4297 9.1854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171971342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:09 Heat of formation + Delta-G solvation = -120.550797 kcal Electronic energy + Delta-G solvation = -23460.161535 eV Core-core repulsion = 19563.599569 eV Total energy + Delta-G solvation = -3896.561966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.91065 -41.74055 -40.36842 -38.45796 -37.41433 -36.68670 -34.52242 -33.19985 -32.04784 -30.65548 -30.17743 -27.34425 -25.85285 -24.51557 -23.67322 -22.56821 -21.17648 -19.64920 -19.28044 -18.51499 -17.97790 -17.23332 -17.15299 -16.87950 -16.53284 -16.23518 -15.92389 -15.61973 -15.36960 -15.14875 -14.62763 -14.49664 -14.36498 -14.03453 -13.71708 -13.64750 -13.29124 -13.01594 -12.90970 -12.86768 -12.72353 -12.48991 -12.26068 -12.19926 -12.14288 -11.96684 -11.90915 -11.12135 -10.71895 -10.56206 -10.13369 -9.81578 -9.21662 -8.16468 -6.34505 -0.12761 -0.01582 1.02945 1.46782 1.49145 1.56325 1.62086 1.67386 2.31048 2.40306 2.70228 3.14430 3.20041 3.53122 3.58060 3.81129 3.84574 3.91341 3.98549 4.14440 4.47075 4.65912 4.69122 4.75760 4.78863 4.91098 4.95095 4.97556 5.08590 5.16921 5.41494 5.50617 5.58543 5.66890 5.87701 6.08757 6.12870 6.72720 6.89428 7.32010 7.49552 8.89754 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.002853 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.927686 B = 9810.410140 C =10430.287062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.273 3.727 3 H -0.004 1.004 4 C -0.545 4.545 5 H 0.080 0.920 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.973 3.027 9 H -0.261 1.261 10 H -0.290 1.290 11 H -0.270 1.270 12 N -0.693 5.693 13 C 0.499 3.501 14 O -0.586 6.586 15 C 0.071 3.929 16 H 0.134 0.866 17 C -0.169 4.169 18 O -0.299 6.299 19 C 0.117 3.883 20 C -0.167 4.167 21 C -0.091 4.091 22 C 0.064 3.936 23 F -0.137 7.137 24 C -0.106 4.106 25 C -0.064 4.064 26 Cl -0.060 7.060 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.009 0.991 30 H 0.265 0.735 31 H 0.410 0.590 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.179 0.821 36 H 0.178 0.822 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -11.248 20.228 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.169 3.831 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.098 0.902 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.186 1.186 10 H -0.216 1.216 11 H -0.195 1.195 12 N -0.344 5.344 13 C 0.285 3.715 14 O -0.466 6.466 15 C 0.012 3.988 16 H 0.151 0.849 17 C -0.227 4.227 18 O -0.211 6.211 19 C 0.070 3.930 20 C -0.185 4.185 21 C -0.110 4.110 22 C 0.044 3.956 23 F -0.116 7.116 24 C -0.126 4.126 25 C -0.092 4.092 26 Cl -0.031 7.031 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.246 0.754 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.196 0.804 36 H 0.196 0.804 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.797 -9.951 20.078 22.916 hybrid contribution 0.034 0.059 -0.799 0.802 sum 4.831 -9.892 19.279 22.200 Atomic orbital electron populations 1.21923 0.98335 0.99713 0.99491 1.18355 0.91069 0.91927 0.81708 0.98581 1.21517 1.32682 1.13705 0.90451 0.90188 1.25826 0.94864 0.95551 1.02456 1.70058 1.36994 1.24043 1.24677 0.85378 0.78673 0.78753 0.77419 1.18591 1.21607 1.19464 1.46105 1.65038 1.14349 1.08943 1.20814 0.78058 0.87219 0.85446 1.90694 1.51950 1.18392 1.85571 1.22450 1.01064 0.92513 0.82743 0.84872 1.22359 0.91772 1.02854 1.05672 1.86322 1.87312 1.35556 1.11955 1.19085 0.96965 0.92477 0.84445 1.21454 1.05184 0.91641 1.00228 1.21382 0.97439 1.02428 0.89710 1.17430 1.06619 0.90544 0.81010 1.91517 1.94006 1.84998 1.41058 1.20929 1.00927 0.94264 0.96443 1.20063 1.10722 0.85606 0.92794 1.98399 1.96764 1.09842 1.98075 0.91528 0.93587 0.97208 0.92598 0.75410 0.87901 0.92665 0.87866 0.80428 0.80423 0.81920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.76 9.26 71.98 0.67 -6.10 16 2 C 0.27 13.72 2.56 44.25 0.11 13.83 16 3 H 0.00 -0.23 7.58 -2.38 -0.02 -0.24 16 4 C -0.55 -27.61 8.73 25.60 0.22 -27.39 16 5 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -52.15 11.32 21.45 0.24 -51.91 16 8 Si 0.97 40.62 29.54 68.60 2.03 42.64 16 9 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 10 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 12 N -0.69 -26.64 5.03 -446.09 -2.24 -28.88 16 13 C 0.50 19.27 7.14 87.66 0.63 19.89 16 14 O -0.59 -29.72 16.17 15.99 0.26 -29.46 16 15 C 0.07 1.82 2.64 29.85 0.08 1.90 16 16 H 0.13 2.32 6.31 -2.39 -0.02 2.30 16 17 C -0.17 -3.19 9.13 71.98 0.66 -2.53 16 18 O -0.30 -8.94 8.80 -74.14 -0.65 -9.60 16 19 C 0.12 2.73 6.59 22.51 0.15 2.88 16 20 C -0.17 -2.50 8.24 22.36 0.18 -2.31 16 21 C -0.09 -1.15 10.02 22.31 0.22 -0.93 16 22 C 0.06 1.04 7.30 22.37 0.16 1.20 16 23 F -0.14 -2.33 17.27 44.97 0.78 -1.56 16 24 C -0.11 -1.97 9.80 22.32 0.22 -1.75 16 25 C -0.06 -1.52 6.33 22.41 0.14 -1.38 16 26 Cl -0.06 -1.63 28.50 -2.72 -0.08 -1.71 16 27 H 0.07 3.66 6.07 -2.38 -0.01 3.65 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.41 12.16 8.32 -92.71 -0.77 11.39 16 32 H 0.10 1.56 7.92 -2.39 -0.02 1.54 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.29 6.91 -2.39 -0.02 1.27 16 35 H 0.18 1.61 5.42 -2.91 -0.02 1.59 16 36 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 37 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -71.93 336.11 4.58 -67.35 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.35 Total: 14.66 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 3.89 Total: -1.55 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.00 Total: -80.79 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.39 Total: -39.05 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.78 Total: -1.56 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -71.93 4.58 -67.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171971342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.199 kcal (2) G-P(sol) polarization free energy of solvation -71.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds