Wall clock time and date at job start Tue Mar 31 2020 10:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.46693 * 2 1 4 4 C 1.50694 * 109.47136 * 119.99377 * 2 1 3 5 5 H 1.08004 * 120.00056 * 120.00297 * 4 2 1 6 6 C 1.37883 * 120.00404 * 300.00583 * 4 2 1 7 7 N 1.31505 * 120.00303 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99796 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47151 * 89.99983 * 8 6 4 10 10 H 1.48502 * 109.47206 * 210.00247 * 8 6 4 11 11 H 1.48505 * 109.47029 * 330.00272 * 8 6 4 12 12 N 1.46496 * 109.47235 * 239.99898 * 2 1 3 13 13 C 1.34778 * 119.99756 * 85.00017 * 12 2 1 14 14 O 1.21273 * 120.00712 * 359.97438 * 13 12 2 15 15 C 1.50707 * 119.99519 * 179.97438 * 13 12 2 16 16 H 1.09005 * 109.46876 * 60.00134 * 15 13 12 17 17 C 1.52996 * 109.47441 * 300.00027 * 15 13 12 18 18 O 1.42900 * 109.46967 * 179.97438 * 15 13 12 19 19 C 1.35972 * 117.00050 * 204.98850 * 18 15 13 20 20 C 1.38685 * 120.03089 * 354.51066 * 19 18 15 21 21 C 1.38158 * 119.97999 * 180.02562 * 20 19 18 22 22 C 1.38468 * 120.05354 * 359.97438 * 21 20 19 23 23 F 1.35098 * 119.96913 * 180.02562 * 22 21 20 24 24 C 1.38432 * 120.06334 * 0.02562 * 22 21 20 25 25 C 1.38259 * 120.02132 * 359.68257 * 24 22 21 26 26 Cl 1.73606 * 120.02803 * 180.32091 * 25 24 22 27 27 H 1.08998 * 109.46597 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47405 * 300.00227 * 1 2 3 29 29 H 1.08995 * 109.46876 * 60.00371 * 1 2 3 30 30 H 0.97000 * 119.99988 * 179.97438 * 7 6 4 31 31 H 0.96996 * 120.00019 * 264.99240 * 12 2 1 32 32 H 1.09004 * 109.47351 * 59.99519 * 17 15 13 33 33 H 1.08993 * 109.47181 * 179.97438 * 17 15 13 34 34 H 1.09004 * 109.46954 * 300.00430 * 17 15 13 35 35 H 1.08002 * 120.01072 * 0.02562 * 20 19 18 36 36 H 1.07997 * 119.97564 * 180.02562 * 21 20 19 37 37 H 1.08000 * 119.98939 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8593 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8021 0.8745 2.6992 10 1 0.9770 1.9956 3.9070 11 1 0.8490 2.1774 1.4921 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8583 1.1583 -2.4118 15 6 2.6501 -0.7286 -3.5874 16 1 1.9778 -1.5509 -3.8324 17 6 4.0527 -1.2785 -3.3213 18 8 2.6975 0.1894 -4.6815 19 6 2.6132 -0.3364 -5.9326 20 6 2.6022 -1.7120 -6.1080 21 6 2.5171 -2.2452 -7.3798 22 6 2.4421 -1.4071 -8.4794 23 9 2.3584 -1.9302 -9.7222 24 6 2.4529 -0.0336 -8.3066 25 6 2.5319 0.5030 -7.0349 26 17 2.5370 2.2253 -6.8174 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9031 -0.5276 4.4376 31 1 2.2492 -1.6317 -1.1525 32 1 4.0162 -1.9788 -2.4868 33 1 4.4162 -1.7927 -4.2109 34 1 4.7249 -0.4562 -3.0762 35 1 2.6603 -2.3664 -5.2508 36 1 2.5082 -3.3164 -7.5163 37 1 2.3947 0.6190 -9.1652 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171971344.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:11 Heat of formation + Delta-G solvation = -113.836749 kcal Electronic energy + Delta-G solvation = -23533.967382 eV Core-core repulsion = 19637.696559 eV Total energy + Delta-G solvation = -3896.270823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.91290 -41.76770 -40.44586 -38.48545 -37.41656 -36.80901 -34.57074 -33.42307 -32.10608 -31.19213 -30.26625 -27.23652 -25.90451 -24.54571 -23.69734 -22.58703 -21.25377 -19.66553 -19.35658 -18.54181 -18.21376 -17.47016 -17.25052 -16.86739 -16.52814 -16.30505 -15.91508 -15.67944 -15.49365 -15.12171 -14.90273 -14.63644 -14.40225 -14.14576 -14.03737 -13.73870 -13.63243 -13.31216 -13.21058 -12.91691 -12.78921 -12.48756 -12.19698 -12.14947 -11.97201 -11.91639 -11.62453 -11.28649 -10.87835 -10.72937 -10.13499 -9.95074 -9.22183 -8.38126 -6.43480 -0.12881 -0.01880 1.02516 1.26998 1.36303 1.44656 1.52805 1.63765 2.25988 2.30861 2.59567 2.98531 3.19925 3.51042 3.56156 3.77159 3.82816 3.88642 3.98255 4.13946 4.44160 4.47029 4.54393 4.66594 4.68435 4.70792 4.78750 4.95140 4.97264 4.99311 5.17261 5.30374 5.40950 5.50312 5.58583 6.05473 6.16673 6.58077 6.79119 7.18373 7.37013 8.76688 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025320 B = 0.003004 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.562518 B = 9317.858568 C = 9938.205241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.243 3.757 3 H 0.020 0.980 4 C -0.530 4.530 5 H 0.065 0.935 6 C 0.033 3.967 7 N -0.931 5.931 8 Si 0.933 3.067 9 H -0.259 1.259 10 H -0.294 1.294 11 H -0.266 1.266 12 N -0.689 5.689 13 C 0.504 3.496 14 O -0.580 6.580 15 C 0.071 3.929 16 H 0.136 0.864 17 C -0.172 4.172 18 O -0.297 6.297 19 C 0.118 3.882 20 C -0.166 4.166 21 C -0.092 4.092 22 C 0.064 3.936 23 F -0.138 7.138 24 C -0.107 4.107 25 C -0.063 4.063 26 Cl -0.059 7.059 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.270 0.730 31 H 0.412 0.588 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.178 0.822 36 H 0.177 0.823 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.207 -5.779 -24.142 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 H 0.038 0.962 4 C -0.568 4.568 5 H 0.083 0.917 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.761 3.239 9 H -0.185 1.185 10 H -0.221 1.221 11 H -0.191 1.191 12 N -0.340 5.340 13 C 0.290 3.710 14 O -0.459 6.459 15 C 0.012 3.988 16 H 0.154 0.846 17 C -0.229 4.229 18 O -0.210 6.210 19 C 0.071 3.929 20 C -0.185 4.185 21 C -0.111 4.111 22 C 0.044 3.956 23 F -0.116 7.116 24 C -0.126 4.126 25 C -0.091 4.091 26 Cl -0.030 7.030 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.249 0.751 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.075 0.925 35 H 0.195 0.805 36 H 0.195 0.805 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.023 -4.613 -23.926 24.388 hybrid contribution -0.337 0.600 0.526 0.867 sum 0.686 -4.013 -23.399 23.751 Atomic orbital electron populations 1.22364 0.97787 1.01997 0.99375 1.18777 0.91221 0.93163 0.83019 0.96203 1.21222 1.32345 1.13698 0.89543 0.91736 1.25476 0.96770 0.99020 0.95496 1.69951 1.46604 1.41786 0.98641 0.86101 0.80036 0.80716 0.77081 1.18492 1.22130 1.19069 1.45841 1.65276 1.14519 1.08379 1.20747 0.77891 0.87160 0.85224 1.90694 1.51741 1.17986 1.85497 1.22423 1.01314 0.91616 0.83431 0.84640 1.22382 0.92834 1.02267 1.05449 1.86310 1.87158 1.35888 1.11625 1.19044 0.97114 0.92577 0.84135 1.21454 1.05167 0.92027 0.99839 1.21379 0.97557 1.02260 0.89855 1.17440 1.06739 0.90991 0.80432 1.91517 1.94049 1.86760 1.39296 1.20934 1.00916 0.94658 0.96087 1.20048 1.10934 0.85456 0.92623 1.98399 1.96998 1.10041 1.97544 0.91053 0.94179 0.93782 0.92047 0.75115 0.88118 0.87927 0.92473 0.80451 0.80541 0.81930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.60 8.96 71.98 0.65 -5.95 16 2 C 0.24 11.06 2.15 44.25 0.10 11.15 16 3 H 0.02 1.04 6.63 -2.38 -0.02 1.02 16 4 C -0.53 -27.55 9.31 25.60 0.24 -27.31 16 5 H 0.06 3.50 7.98 -2.91 -0.02 3.47 16 6 C 0.03 1.78 5.45 84.66 0.46 2.24 16 7 N -0.93 -54.28 13.96 21.45 0.30 -53.98 16 8 Si 0.93 43.98 24.37 68.60 1.67 45.66 16 9 H -0.26 -11.46 6.87 99.48 0.68 -10.78 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.27 -12.63 6.53 99.48 0.65 -11.98 16 12 N -0.69 -24.57 4.96 -446.09 -2.21 -26.79 16 13 C 0.50 17.75 7.20 87.66 0.63 18.38 16 14 O -0.58 -26.55 16.16 16.03 0.26 -26.29 16 15 C 0.07 1.67 2.64 29.85 0.08 1.75 16 16 H 0.14 2.11 6.31 -2.38 -0.02 2.09 16 17 C -0.17 -3.07 9.07 71.98 0.65 -2.42 16 18 O -0.30 -8.25 8.79 -74.19 -0.65 -8.91 16 19 C 0.12 2.57 6.59 22.51 0.15 2.72 16 20 C -0.17 -2.32 8.24 22.36 0.18 -2.14 16 21 C -0.09 -1.10 10.02 22.31 0.22 -0.88 16 22 C 0.06 0.99 7.30 22.37 0.16 1.16 16 23 F -0.14 -2.26 17.27 44.97 0.78 -1.49 16 24 C -0.11 -1.86 9.80 22.32 0.22 -1.65 16 25 C -0.06 -1.40 6.33 22.41 0.14 -1.26 16 26 Cl -0.06 -1.51 28.50 -2.72 -0.08 -1.58 16 27 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.04 1.74 3.27 -2.39 -0.01 1.73 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 30 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 31 H 0.41 11.85 7.96 -92.71 -0.74 11.12 16 32 H 0.10 1.51 7.57 -2.38 -0.02 1.49 16 33 H 0.10 1.22 6.91 -2.39 -0.02 1.20 16 34 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.18 1.44 5.42 -2.91 -0.02 1.42 16 36 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -71.05 328.50 4.26 -66.79 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.31 Total: 10.79 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 3.88 Total: -4.20 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -1.91 Total: -80.77 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.39 Total: -35.20 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.49 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.67 Total: 45.66 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.58 kcal Total: -71.05 4.26 -66.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171971344.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.047 kcal (2) G-P(sol) polarization free energy of solvation -71.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds