Wall clock time and date at job start Tue Mar 31 2020 11:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47147 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54352 * 291.62304 * 11 10 9 13 13 O 1.42104 * 110.53977 * 68.37293 * 11 10 9 14 14 N 1.65593 * 104.45079 * 179.97438 * 11 10 9 15 15 C 1.46934 * 120.62992 * 269.72371 * 14 11 10 16 16 C 1.52770 * 109.00329 * 233.58117 * 15 14 11 17 17 C 1.53035 * 109.38659 * 305.58598 * 16 15 14 18 18 C 1.52999 * 109.44989 * 181.25492 * 17 16 15 19 19 F 1.39894 * 109.47031 * 299.94096 * 18 17 16 20 20 F 1.39896 * 109.46718 * 59.93929 * 18 17 16 21 21 F 1.39900 * 109.47049 * 179.97438 * 18 17 16 22 22 C 1.53046 * 109.53826 * 61.23882 * 17 16 15 23 23 C 1.46931 * 120.63291 * 90.00018 * 14 11 10 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 1.08993 * 109.58697 * 353.41445 * 15 14 11 30 30 H 1.08990 * 109.58663 * 113.84516 * 15 14 11 31 31 H 1.09004 * 109.55803 * 185.54935 * 16 15 14 32 32 H 1.08999 * 109.35852 * 65.49859 * 16 15 14 33 33 H 1.09002 * 109.45921 * 301.22741 * 17 16 15 34 34 H 1.08998 * 109.49981 * 178.68351 * 22 17 16 35 35 H 1.09006 * 109.52022 * 58.60576 * 22 17 16 36 36 H 1.09004 * 109.58553 * 246.15574 * 23 14 11 37 37 H 1.09000 * 109.58081 * 6.43530 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 16 1.3382 -5.2330 -0.0021 12 8 0.6637 -5.4199 1.2346 13 8 0.6647 -5.4194 -1.2394 14 7 2.5203 -6.3927 -0.0025 15 6 3.0505 -6.9208 -1.2670 16 6 2.9442 -8.4447 -1.2531 17 6 3.6381 -8.9910 -0.0033 18 6 3.5598 -10.5190 -0.0038 19 9 2.2187 -10.9171 -0.0032 20 9 4.1939 -11.0179 -1.1466 21 9 4.1945 -11.0188 1.1383 22 6 2.9445 -8.4453 1.2471 23 6 3.0547 -6.9175 1.2616 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 2.4715 -6.5231 -2.1004 30 1 4.0957 -6.6312 -1.3742 31 1 3.4240 -8.8521 -2.1431 32 1 1.8932 -8.7335 -1.2413 33 1 4.6831 -8.6808 -0.0032 34 1 3.4244 -8.8531 2.1367 35 1 1.8934 -8.7342 1.2359 36 1 4.1004 -6.6275 1.3647 37 1 2.4801 -6.5154 2.0960 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173906407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:04 Heat of formation + Delta-G solvation = -244.393735 kcal Electronic energy + Delta-G solvation = -25131.054213 eV Core-core repulsion = 20812.769285 eV Total energy + Delta-G solvation = -4318.284927 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.36219 -47.85524 -47.81040 -38.84119 -36.74677 -35.50914 -33.92872 -33.42288 -31.43847 -31.19700 -27.12123 -25.61164 -23.77219 -23.30977 -21.63703 -20.85115 -18.88576 -18.54851 -18.43339 -18.03524 -17.25084 -16.53794 -15.99651 -15.54423 -15.08519 -14.92160 -14.67700 -14.59160 -14.37985 -14.25927 -14.01922 -13.99179 -13.92529 -13.80122 -13.42967 -13.38796 -12.69928 -12.54483 -11.80961 -11.78574 -11.77871 -11.65305 -11.56534 -11.44732 -11.11181 -11.00322 -10.99867 -10.82491 -10.45262 -10.42019 -9.81344 -9.40764 -8.91523 -8.53626 -6.15708 -4.21624 0.66076 2.48102 2.90992 3.23753 3.30199 3.32666 3.49577 3.68628 3.75032 4.22470 4.33125 4.36750 4.38387 4.58807 4.68773 4.81747 4.82270 5.04123 5.19492 5.25879 5.30369 5.40269 5.41419 5.53781 5.62025 5.67112 5.72438 5.89417 5.99193 6.43696 6.52830 7.25692 7.31452 7.77064 8.13602 8.81806 9.43442 10.95264 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.035454 B = 0.002957 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.574354 B = 9467.138070 C = 9574.027357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.587 4.587 11 S 2.588 3.412 12 O -0.962 6.962 13 O -0.962 6.962 14 N -1.010 6.010 15 C 0.123 3.877 16 C -0.132 4.132 17 C -0.130 4.130 18 C 0.453 3.547 19 F -0.181 7.181 20 F -0.185 7.185 21 F -0.185 7.185 22 C -0.132 4.132 23 C 0.123 3.877 24 H 0.265 0.735 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.271 -19.557 -0.007 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.721 4.721 11 S 2.688 3.312 12 O -0.953 6.953 13 O -0.953 6.953 14 N -0.846 5.846 15 C -0.003 4.003 16 C -0.171 4.171 17 C -0.149 4.149 18 C 0.399 3.601 19 F -0.163 7.163 20 F -0.166 7.166 21 F -0.166 7.166 22 C -0.171 4.171 23 C -0.003 4.003 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.122 0.878 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.169 -19.692 -0.003 21.722 hybrid contribution 1.103 0.859 -0.009 1.398 sum 10.272 -18.833 -0.012 21.452 Atomic orbital electron populations 1.69958 1.06123 1.27244 1.49477 1.25072 0.94981 0.99571 0.94866 0.86462 0.79700 0.82821 0.78252 1.20448 1.20989 1.19756 1.20994 0.93051 0.89744 1.52267 0.92041 1.18975 0.92716 0.90603 0.98888 1.30482 1.13628 1.17881 1.10068 1.05789 0.74820 0.76455 0.74157 1.93534 1.71147 1.85206 1.45364 1.93533 1.71207 1.85211 1.45311 1.58066 1.59443 1.56089 1.10987 1.21258 1.00212 0.92545 0.86274 1.21903 1.02323 0.97089 0.95832 1.22476 1.04886 0.87380 1.00206 1.20676 0.73542 0.92647 0.73243 1.93183 1.34375 1.92576 1.96144 1.93173 1.82321 1.89783 1.51351 1.93174 1.82298 1.89754 1.51409 1.21970 1.02311 0.97040 0.95797 1.21345 1.00162 0.92516 0.86263 0.92492 0.94847 0.94848 0.86223 0.86231 0.87791 0.90996 0.89397 0.89838 0.86493 0.89433 0.89819 0.90973 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 10 C -0.59 -10.67 6.12 37.16 0.23 -10.44 16 11 S 2.59 43.80 5.45 -107.50 -0.59 43.22 16 12 O -0.96 -18.86 16.59 -57.54 -0.95 -19.81 16 13 O -0.96 -18.86 16.58 -57.54 -0.95 -19.81 16 14 N -1.01 -12.11 3.23 -113.76 -0.37 -12.48 16 15 C 0.12 1.19 6.40 -3.92 -0.03 1.17 16 16 C -0.13 -1.14 5.10 -26.83 -0.14 -1.28 16 17 C -0.13 -1.02 2.13 -90.58 -0.19 -1.22 16 18 C 0.45 4.10 2.69 37.16 0.10 4.20 16 19 F -0.18 -1.91 16.33 2.25 0.04 -1.87 16 20 F -0.18 -1.74 16.77 2.25 0.04 -1.70 16 21 F -0.18 -1.74 16.77 2.25 0.04 -1.70 16 22 C -0.13 -1.14 5.11 -26.61 -0.14 -1.28 16 23 C 0.12 1.19 6.43 -3.71 -0.02 1.17 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.12 1.93 8.14 -51.92 -0.42 1.51 16 28 H 0.12 1.94 8.14 -51.92 -0.42 1.51 16 29 H 0.10 1.10 6.85 -51.93 -0.36 0.75 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.61 7.76 -51.93 -0.40 0.21 16 32 H 0.08 0.83 7.84 -51.93 -0.41 0.43 16 33 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.61 7.77 -51.93 -0.40 0.21 16 35 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 1.10 6.86 -51.93 -0.36 0.74 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -33.72 327.38 -7.67 -41.39 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.83 Total: -2.53 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -0.74 Total: -20.07 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.37 Total: -37.89 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -1.91 Total: -39.62 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.11 Total: -5.27 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 43.80 SS G_CDS: -0.59 Total: 43.22 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.72 -7.67 -41.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173906407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.006 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds