Wall clock time and date at job start Tue Mar 31 2020 11:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47147 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54352 * 291.62304 * 11 10 9 13 13 O 1.42104 * 110.53977 * 68.37293 * 11 10 9 14 14 N 1.65593 * 104.45079 * 179.97438 * 11 10 9 15 15 C 1.46934 * 120.62992 * 269.72371 * 14 11 10 16 16 C 1.52770 * 109.00329 * 233.58117 * 15 14 11 17 17 C 1.53035 * 109.38659 * 305.58598 * 16 15 14 18 18 C 1.52999 * 109.44989 * 181.25492 * 17 16 15 19 19 F 1.39894 * 109.47031 * 299.94096 * 18 17 16 20 20 F 1.39896 * 109.46718 * 59.93929 * 18 17 16 21 21 F 1.39900 * 109.47049 * 179.97438 * 18 17 16 22 22 C 1.53046 * 109.53826 * 61.23882 * 17 16 15 23 23 C 1.46931 * 120.63291 * 90.00018 * 14 11 10 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 1.08993 * 109.58697 * 353.41445 * 15 14 11 30 30 H 1.08990 * 109.58663 * 113.84516 * 15 14 11 31 31 H 1.09004 * 109.55803 * 185.54935 * 16 15 14 32 32 H 1.08999 * 109.35852 * 65.49859 * 16 15 14 33 33 H 1.09002 * 109.45921 * 301.22741 * 17 16 15 34 34 H 1.08998 * 109.49981 * 178.68351 * 22 17 16 35 35 H 1.09006 * 109.52022 * 58.60576 * 22 17 16 36 36 H 1.09004 * 109.58553 * 246.15574 * 23 14 11 37 37 H 1.09000 * 109.58081 * 6.43530 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 16 1.3382 -5.2330 -0.0021 12 8 0.6637 -5.4199 1.2346 13 8 0.6647 -5.4194 -1.2394 14 7 2.5203 -6.3927 -0.0025 15 6 3.0505 -6.9208 -1.2670 16 6 2.9442 -8.4447 -1.2531 17 6 3.6381 -8.9910 -0.0033 18 6 3.5598 -10.5190 -0.0038 19 9 2.2187 -10.9171 -0.0032 20 9 4.1939 -11.0179 -1.1466 21 9 4.1945 -11.0188 1.1383 22 6 2.9445 -8.4453 1.2471 23 6 3.0547 -6.9175 1.2616 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 2.4715 -6.5231 -2.1004 30 1 4.0957 -6.6312 -1.3742 31 1 3.4240 -8.8521 -2.1431 32 1 1.8932 -8.7335 -1.2413 33 1 4.6831 -8.6808 -0.0032 34 1 3.4244 -8.8531 2.1367 35 1 1.8934 -8.7342 1.2359 36 1 4.1004 -6.6275 1.3647 37 1 2.4801 -6.5154 2.0960 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173906407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:04 Heat of formation + Delta-G solvation = -267.624140 kcal Electronic energy + Delta-G solvation = -25132.061559 eV Core-core repulsion = 20812.769285 eV Total energy + Delta-G solvation = -4319.292273 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.07990 -48.56014 -48.55735 -39.61023 -38.21929 -36.98864 -35.87934 -34.24472 -33.10592 -32.16735 -27.95458 -27.49556 -24.50867 -24.15065 -23.42083 -21.63985 -19.91942 -19.30879 -19.26297 -19.17179 -18.57752 -17.97051 -17.20077 -17.03336 -16.52585 -15.87160 -15.80807 -15.53518 -15.20389 -15.06928 -14.97544 -14.74919 -14.72562 -14.66411 -14.58865 -14.44559 -14.25008 -13.71141 -13.55548 -13.17957 -12.96428 -12.91941 -12.89392 -12.76673 -12.26077 -12.24299 -12.19464 -12.11581 -11.78448 -11.76767 -11.57457 -11.10552 -10.64111 -9.97280 -8.25409 -6.39597 -0.70672 1.42037 1.43699 1.54798 1.73406 1.82574 2.38840 2.80806 2.89549 2.99915 3.08142 3.09063 3.18873 3.61617 3.79343 3.89196 4.05760 4.08534 4.17707 4.19733 4.37258 4.59176 4.66693 4.74235 4.75103 4.78073 4.84629 5.04578 5.15610 5.22965 5.28132 5.29501 5.66525 5.69192 6.06823 6.74585 7.30903 8.86801 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.035454 B = 0.002957 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.574354 B = 9467.138070 C = 9574.027357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.018 3.982 10 C -0.585 4.585 11 S 2.611 3.389 12 O -0.995 6.995 13 O -0.995 6.995 14 N -1.000 6.000 15 C 0.114 3.886 16 C -0.132 4.132 17 C -0.123 4.123 18 C 0.453 3.547 19 F -0.194 7.194 20 F -0.186 7.186 21 F -0.186 7.186 22 C -0.132 4.132 23 C 0.114 3.886 24 H 0.267 0.733 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.574 -19.954 -0.006 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.577 4.577 8 H 0.096 0.904 9 C -0.021 4.021 10 C -0.717 4.717 11 S 2.710 3.290 12 O -0.985 6.985 13 O -0.985 6.985 14 N -0.839 5.839 15 C -0.010 4.010 16 C -0.172 4.172 17 C -0.143 4.143 18 C 0.399 3.601 19 F -0.176 7.176 20 F -0.168 7.168 21 F -0.168 7.168 22 C -0.171 4.171 23 C -0.010 4.010 24 H 0.076 0.924 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.161 0.839 28 H 0.161 0.839 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.167 0.833 34 H 0.127 0.873 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.482 -20.087 -0.003 23.650 hybrid contribution 0.086 0.849 -0.010 0.854 sum 12.568 -19.238 -0.013 22.979 Atomic orbital electron populations 1.70111 1.08124 1.28303 1.50958 1.26134 0.95845 1.03950 0.94418 0.85306 0.78674 0.77613 0.78623 1.19615 1.21010 1.17994 1.21531 0.94036 0.90741 1.51385 0.90449 1.18834 0.93707 0.93293 0.96216 1.30370 1.12609 1.16263 1.12418 1.04755 0.75072 0.76521 0.72698 1.93487 1.72653 1.85685 1.46657 1.93485 1.72709 1.85689 1.46603 1.57652 1.58730 1.54431 1.13091 1.21574 1.01932 0.93031 0.84473 1.21908 1.01555 0.96367 0.97330 1.22509 1.06462 0.86153 0.99132 1.20864 0.72912 0.93266 0.73098 1.93163 1.35467 1.92788 1.96190 1.93170 1.82255 1.89905 1.51428 1.93171 1.82233 1.89876 1.51488 1.21974 1.01542 0.96325 0.97295 1.21663 1.01887 0.92995 0.84464 0.92435 0.97702 0.97705 0.83859 0.83882 0.89069 0.87121 0.87267 0.91960 0.83277 0.87313 0.91942 0.87098 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.53 13.29 21.45 0.28 -56.25 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.97 42.54 29.54 68.60 2.03 44.57 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.54 -29.22 9.11 25.60 0.23 -28.98 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.02 0.94 4.98 29.85 0.15 1.09 16 10 C -0.58 -20.80 6.12 71.98 0.44 -20.36 16 11 S 2.61 88.56 5.45 -56.49 -0.31 88.26 16 12 O -0.99 -39.91 16.59 -127.65 -2.12 -42.03 16 13 O -0.99 -39.90 16.58 -127.65 -2.12 -42.01 16 14 N -1.00 -22.01 3.23 -513.83 -1.66 -23.67 16 15 C 0.11 1.90 6.40 86.22 0.55 2.46 16 16 C -0.13 -1.97 5.10 30.53 0.16 -1.81 16 17 C -0.12 -1.55 2.13 -10.77 -0.02 -1.57 16 18 C 0.45 7.18 2.69 71.98 0.19 7.38 16 19 F -0.19 -3.92 16.33 44.97 0.73 -3.19 16 20 F -0.19 -3.05 16.77 44.97 0.75 -2.30 16 21 F -0.19 -3.06 16.77 44.97 0.75 -2.30 16 22 C -0.13 -1.96 5.11 30.67 0.16 -1.81 16 23 C 0.11 1.90 6.43 86.36 0.56 2.46 16 24 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 25 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 28 H 0.14 4.35 8.14 -2.39 -0.02 4.34 16 29 H 0.09 1.80 6.85 -2.39 -0.02 1.78 16 30 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.11 1.18 7.76 -2.38 -0.02 1.16 16 32 H 0.06 1.20 7.84 -2.39 -0.02 1.18 16 33 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.11 1.18 7.77 -2.39 -0.02 1.16 16 35 H 0.06 1.20 7.85 -2.38 -0.02 1.18 16 36 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.09 1.79 6.86 -2.39 -0.02 1.78 16 Total: -1.00 -75.65 327.38 2.31 -73.33 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.08 Total: 6.56 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 2.87 Total: -40.98 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.37 Total: -79.92 kcal Atomic # 8 Polarization: -79.81 SS G_CDS: -4.23 Total: -84.04 kcal Atomic # 9 Polarization: -10.03 SS G_CDS: 2.24 Total: -7.79 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 88.56 SS G_CDS: -0.31 Total: 88.26 kcal Total: -75.65 2.31 -73.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173906407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.290 kcal (2) G-P(sol) polarization free energy of solvation -75.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds