Wall clock time and date at job start Tue Mar 31 2020 11:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86794 * 120.00189 * 2 1 4 4 H 1.48495 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47366 * 300.00295 * 3 2 1 6 6 H 1.48502 * 109.46915 * 60.00054 * 3 2 1 7 7 C 1.38802 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99432 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00090 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99914 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99931 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00172 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00021 * 180.02562 * 13 11 10 15 15 C 1.50707 * 109.47012 * 269.99478 * 14 13 11 16 16 C 1.38238 * 119.99792 * 90.00154 * 15 14 13 17 17 C 1.38235 * 119.99712 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00220 * 359.97124 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38234 * 120.00179 * 269.98090 * 15 14 13 21 21 C 1.46496 * 119.99734 * 359.97438 * 13 11 10 22 22 C 1.53005 * 109.47051 * 269.99938 * 21 13 11 23 23 F 1.39895 * 109.47224 * 300.00101 * 22 21 13 24 24 F 1.39898 * 109.46663 * 60.00471 * 22 21 13 25 25 H 0.97004 * 119.99838 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47554 * 59.99784 * 10 9 7 27 27 H 1.09003 * 109.46961 * 299.99888 * 10 9 7 28 28 H 1.09005 * 109.47643 * 149.99939 * 14 13 11 29 29 H 1.09000 * 109.47513 * 29.99103 * 14 13 11 30 30 H 1.08005 * 120.00068 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.99770 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 34 34 H 1.07999 * 119.99968 * 359.97438 * 20 15 14 35 35 H 1.08997 * 109.47515 * 30.00540 * 21 13 11 36 36 H 1.09004 * 109.47153 * 150.00388 * 21 13 11 37 37 H 1.09008 * 109.46747 * 180.02562 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8914 -0.0013 11 6 1.9873 -5.3027 -0.0018 12 8 0.7910 -5.5023 -0.0019 13 7 2.8441 -6.3431 -0.0009 14 6 2.3303 -7.7151 -0.0019 15 6 2.1525 -8.1859 1.4187 16 6 0.9498 -7.9819 2.0689 17 6 0.7865 -8.4143 3.3718 18 6 1.8257 -9.0510 4.0241 19 6 3.0301 -9.2501 3.3757 20 6 3.1919 -8.8220 2.0713 21 6 4.2891 -6.1021 -0.0002 22 6 4.7929 -6.0186 -1.4425 23 9 4.5213 -7.2222 -2.1017 24 9 4.1454 -4.9688 -2.1026 25 1 -0.4850 0.8401 -0.0004 26 1 3.1238 -3.7318 0.8891 27 1 3.1251 -3.7310 -0.8908 28 1 3.0370 -8.3674 -0.5150 29 1 1.3700 -7.7431 -0.5168 30 1 0.1377 -7.4849 1.5591 31 1 -0.1530 -8.2546 3.8799 32 1 1.6979 -9.3891 5.0418 33 1 3.8435 -9.7437 3.8868 34 1 4.1313 -8.9819 1.5630 35 1 4.5008 -5.1643 0.5135 36 1 4.7937 -6.9200 0.5142 37 1 5.8682 -5.8397 -1.4419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174617963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:46 Heat of formation + Delta-G solvation = -110.569321 kcal Electronic energy + Delta-G solvation = -23930.974696 eV Core-core repulsion = 20049.262056 eV Total energy + Delta-G solvation = -3881.712640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.01102 -47.02640 -39.95647 -38.71105 -35.67300 -32.41832 -32.40176 -30.93335 -29.54038 -29.22399 -25.83635 -25.31731 -23.53500 -22.52324 -21.55069 -19.35497 -17.98162 -17.56699 -17.42135 -17.10105 -16.69541 -16.17676 -15.72615 -15.28563 -14.94948 -14.79145 -14.56201 -14.11375 -13.82493 -13.47401 -13.44022 -13.31608 -13.06186 -12.76003 -12.65725 -12.59071 -12.43300 -12.16819 -11.78566 -11.35122 -11.24776 -11.05689 -11.00650 -10.97180 -10.74216 -9.78479 -9.52133 -9.05585 -8.95791 -8.84246 -8.69080 -8.20175 -6.46878 -6.20140 -3.89832 1.21955 1.37044 2.82974 2.96065 3.22344 3.24901 3.31363 3.55174 3.70089 3.82701 4.11322 4.21403 4.27545 4.50277 4.74123 4.77022 4.92169 4.94432 5.09206 5.13917 5.15143 5.21148 5.27271 5.43414 5.57211 5.64027 5.72133 5.92286 5.94243 6.03007 6.21063 6.37936 6.43809 6.49136 6.59791 6.95975 7.37225 7.61502 8.37053 8.47855 9.25381 10.87438 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.004080 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.359625 B = 6860.800386 C = 8119.305230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.162 4.162 11 C 0.540 3.460 12 O -0.505 6.505 13 N -0.614 5.614 14 C 0.155 3.845 15 C -0.105 4.105 16 C -0.091 4.091 17 C -0.122 4.122 18 C -0.120 4.120 19 C -0.128 4.128 20 C -0.111 4.111 21 C 0.062 3.938 22 C 0.241 3.759 23 F -0.205 7.205 24 F -0.192 7.192 25 H 0.267 0.733 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.718 -18.614 3.427 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.680 4.680 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.313 4.313 11 C 0.328 3.672 12 O -0.378 6.378 13 N -0.349 5.349 14 C 0.032 3.968 15 C -0.106 4.106 16 C -0.110 4.110 17 C -0.140 4.140 18 C -0.138 4.138 19 C -0.146 4.146 20 C -0.129 4.129 21 C -0.063 4.063 22 C 0.186 3.814 23 F -0.187 7.187 24 F -0.173 7.173 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.725 -18.792 3.376 21.427 hybrid contribution 2.034 1.285 0.002 2.406 sum 11.759 -17.507 3.378 21.358 Atomic orbital electron populations 1.70032 1.05943 1.27287 1.47066 1.24983 0.95010 0.98984 0.94592 0.86128 0.79591 0.81956 0.77885 1.19624 1.20566 1.20602 1.22886 0.94894 0.91594 1.58676 0.90932 1.85351 1.04970 0.96368 1.96707 1.23776 1.06999 0.95097 1.05392 1.20409 0.86248 0.86132 0.74365 1.90675 1.14979 1.85145 1.47000 1.47890 1.04952 1.06017 1.76045 1.20388 1.01851 0.81943 0.92576 1.20281 0.94294 0.98972 0.97068 1.21329 0.97631 0.97295 0.94715 1.21221 0.99180 0.98523 0.95038 1.21160 0.93611 0.99276 0.99740 1.21074 0.97551 1.00928 0.95008 1.21001 0.98124 0.98849 0.94940 1.22721 0.83245 1.06169 0.94208 1.22608 0.97553 0.72233 0.89038 1.92964 1.95673 1.46795 1.83222 1.93007 1.84174 1.57294 1.82870 0.92277 0.89621 0.87667 0.89506 0.88710 0.85073 0.86022 0.86331 0.86312 0.86426 0.86875 0.87521 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.16 -3.33 4.64 36.00 0.17 -3.17 16 11 C 0.54 10.23 7.36 -10.99 -0.08 10.15 16 12 O -0.51 -11.28 14.97 5.55 0.08 -11.20 16 13 N -0.61 -8.53 2.37 -175.06 -0.42 -8.95 16 14 C 0.15 1.92 5.33 -5.19 -0.03 1.90 16 15 C -0.10 -1.29 5.46 -104.62 -0.57 -1.86 16 16 C -0.09 -1.24 9.70 -39.58 -0.38 -1.63 16 17 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 18 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 19 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 20 C -0.11 -1.12 9.70 -39.58 -0.38 -1.50 16 21 C 0.06 0.60 5.60 -4.04 -0.02 0.58 16 22 C 0.24 2.34 5.60 37.16 0.21 2.55 16 23 F -0.21 -2.28 16.24 2.25 0.04 -2.24 16 24 F -0.19 -2.76 14.31 2.25 0.03 -2.73 16 25 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.09 1.61 7.40 -51.92 -0.38 1.22 16 27 H 0.11 2.08 5.48 -51.91 -0.28 1.79 16 28 H 0.09 0.87 7.19 -51.93 -0.37 0.50 16 29 H 0.09 1.34 7.37 -51.93 -0.38 0.96 16 30 H 0.13 2.00 7.58 -52.48 -0.40 1.61 16 31 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.11 1.05 6.44 -51.93 -0.33 0.72 16 36 H 0.11 0.69 8.07 -51.93 -0.42 0.27 16 37 H 0.12 0.63 8.14 -51.92 -0.42 0.21 16 LS Contribution 337.11 15.07 5.08 5.08 Total: -1.00 -35.55 337.11 -8.01 -43.56 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.23 Total: 0.48 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -2.09 Total: -11.02 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.32 Total: -34.49 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.07 Total: -4.97 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.55 -8.01 -43.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174617963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.014 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds