Wall clock time and date at job start Tue Mar 31 2020 11:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86794 * 120.00189 * 2 1 4 4 H 1.48495 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47366 * 300.00295 * 3 2 1 6 6 H 1.48502 * 109.46915 * 60.00054 * 3 2 1 7 7 C 1.38802 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99432 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00090 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99914 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99931 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00172 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00021 * 180.02562 * 13 11 10 15 15 C 1.50707 * 109.47012 * 269.99478 * 14 13 11 16 16 C 1.38238 * 119.99792 * 90.00154 * 15 14 13 17 17 C 1.38235 * 119.99712 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00220 * 359.97124 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38234 * 120.00179 * 269.98090 * 15 14 13 21 21 C 1.46496 * 119.99734 * 359.97438 * 13 11 10 22 22 C 1.53005 * 109.47051 * 269.99938 * 21 13 11 23 23 F 1.39895 * 109.47224 * 300.00101 * 22 21 13 24 24 F 1.39898 * 109.46663 * 60.00471 * 22 21 13 25 25 H 0.97004 * 119.99838 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47554 * 59.99784 * 10 9 7 27 27 H 1.09003 * 109.46961 * 299.99888 * 10 9 7 28 28 H 1.09005 * 109.47643 * 149.99939 * 14 13 11 29 29 H 1.09000 * 109.47513 * 29.99103 * 14 13 11 30 30 H 1.08005 * 120.00068 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.99770 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 34 34 H 1.07999 * 119.99968 * 359.97438 * 20 15 14 35 35 H 1.08997 * 109.47515 * 30.00540 * 21 13 11 36 36 H 1.09004 * 109.47153 * 150.00388 * 21 13 11 37 37 H 1.09008 * 109.46747 * 180.02562 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8914 -0.0013 11 6 1.9873 -5.3027 -0.0018 12 8 0.7910 -5.5023 -0.0019 13 7 2.8441 -6.3431 -0.0009 14 6 2.3303 -7.7151 -0.0019 15 6 2.1525 -8.1859 1.4187 16 6 0.9498 -7.9819 2.0689 17 6 0.7865 -8.4143 3.3718 18 6 1.8257 -9.0510 4.0241 19 6 3.0301 -9.2501 3.3757 20 6 3.1919 -8.8220 2.0713 21 6 4.2891 -6.1021 -0.0002 22 6 4.7929 -6.0186 -1.4425 23 9 4.5213 -7.2222 -2.1017 24 9 4.1454 -4.9688 -2.1026 25 1 -0.4850 0.8401 -0.0004 26 1 3.1238 -3.7318 0.8891 27 1 3.1251 -3.7310 -0.8908 28 1 3.0370 -8.3674 -0.5150 29 1 1.3700 -7.7431 -0.5168 30 1 0.1377 -7.4849 1.5591 31 1 -0.1530 -8.2546 3.8799 32 1 1.6979 -9.3891 5.0418 33 1 3.8435 -9.7437 3.8868 34 1 4.1313 -8.9819 1.5630 35 1 4.5008 -5.1643 0.5135 36 1 4.7937 -6.9200 0.5142 37 1 5.8682 -5.8397 -1.4419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174617963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:45 Heat of formation + Delta-G solvation = -132.333923 kcal Electronic energy + Delta-G solvation = -23931.918480 eV Core-core repulsion = 20049.262056 eV Total energy + Delta-G solvation = -3882.656424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.86712 -47.90861 -41.14572 -39.76108 -36.90660 -34.58383 -33.37073 -31.77705 -30.87846 -30.27766 -27.73501 -26.69367 -24.42879 -23.37229 -22.49431 -20.67198 -19.66085 -18.56145 -18.46975 -18.14003 -17.85630 -17.15184 -16.91747 -16.86390 -16.18774 -15.97775 -15.85409 -15.75445 -14.87697 -14.67044 -14.52501 -14.39851 -14.27877 -14.12359 -13.57456 -13.55228 -13.40325 -13.29591 -13.15400 -12.98743 -12.89937 -12.56770 -12.32618 -12.05992 -11.84231 -11.69391 -11.15386 -11.00377 -10.26624 -9.89773 -9.81102 -9.68085 -8.66405 -8.34579 -6.12577 0.34127 0.51066 1.26120 1.41402 1.45633 1.51597 1.57246 2.02337 2.27311 2.92640 2.97887 2.99927 3.19925 3.43966 3.52937 3.60778 3.84362 3.96063 4.05146 4.17288 4.23739 4.29052 4.31955 4.35738 4.53679 4.56519 4.59813 4.72290 4.77315 5.09921 5.16650 5.37421 5.41800 5.55974 5.63106 5.69177 6.12108 6.12860 6.20265 7.06412 7.07071 8.75128 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.004080 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.359625 B = 6860.800386 C = 8119.305230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.083 0.917 9 S -0.155 6.155 10 C -0.134 4.134 11 C 0.536 3.464 12 O -0.554 6.554 13 N -0.602 5.602 14 C 0.158 3.842 15 C -0.116 4.116 16 C -0.123 4.123 17 C -0.139 4.139 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.103 4.103 21 C 0.051 3.949 22 C 0.233 3.767 23 F -0.214 7.214 24 F -0.224 7.224 25 H 0.271 0.729 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.152 0.848 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.152 -19.672 4.400 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.690 4.690 8 H 0.101 0.899 9 S 0.072 5.928 10 C -0.285 4.285 11 C 0.324 3.676 12 O -0.431 6.431 13 N -0.335 5.335 14 C 0.036 3.964 15 C -0.117 4.117 16 C -0.141 4.141 17 C -0.157 4.157 18 C -0.139 4.139 19 C -0.141 4.141 20 C -0.122 4.122 21 C -0.072 4.072 22 C 0.179 3.821 23 F -0.195 7.195 24 F -0.206 7.206 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.141 0.859 32 H 0.161 0.839 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.138 0.862 36 H 0.170 0.830 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 14.209 -19.892 4.347 24.829 hybrid contribution 0.713 1.433 -0.266 1.623 sum 14.922 -18.459 4.081 24.084 Atomic orbital electron populations 1.70202 1.08044 1.28506 1.48182 1.26140 0.95952 1.03331 0.93721 0.84899 0.78714 0.76236 0.78059 1.17802 1.20023 1.19860 1.23207 0.95293 0.91813 1.58686 0.89911 1.85562 1.10729 0.99439 1.97026 1.23585 1.03790 0.94271 1.06828 1.20198 0.86150 0.86662 0.74571 1.90665 1.17119 1.85731 1.49553 1.47821 1.06495 1.05286 1.73906 1.20464 1.01361 0.81368 0.93208 1.20264 0.94559 1.00096 0.96813 1.21248 0.97924 0.99081 0.95886 1.21361 1.00342 0.99346 0.94611 1.21501 0.93347 0.98251 1.00811 1.21527 0.97944 0.99804 0.94861 1.21349 0.98464 0.97199 0.95144 1.23220 0.80364 1.08487 0.95150 1.23215 1.00032 0.70922 0.87974 1.92946 1.95918 1.47236 1.83414 1.92941 1.85117 1.58950 1.83560 0.92041 0.87568 0.86547 0.86187 0.91754 0.88641 0.85855 0.83914 0.82873 0.82818 0.86210 0.82980 0.81064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.91 13.22 21.65 0.29 -56.62 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 4 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.44 9.50 67.95 0.65 -30.80 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.86 20.57 -56.49 -1.16 -10.02 16 10 C -0.13 -5.55 4.64 71.24 0.33 -5.22 16 11 C 0.54 20.87 7.36 87.66 0.64 21.51 16 12 O -0.55 -26.56 14.97 -3.05 -0.05 -26.60 16 13 N -0.60 -16.06 2.37 -826.14 -1.96 -18.03 16 14 C 0.16 3.82 5.33 85.64 0.46 4.27 16 15 C -0.12 -2.74 5.46 -19.86 -0.11 -2.85 16 16 C -0.12 -3.54 9.70 22.27 0.22 -3.33 16 17 C -0.14 -3.37 10.05 22.27 0.22 -3.15 16 18 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 19 C -0.12 -1.90 10.05 22.27 0.22 -1.68 16 20 C -0.10 -1.70 9.70 22.27 0.22 -1.48 16 21 C 0.05 0.80 5.60 86.38 0.48 1.28 16 22 C 0.23 3.69 5.60 71.98 0.40 4.10 16 23 F -0.21 -4.08 16.24 44.97 0.73 -3.35 16 24 F -0.22 -6.10 14.31 44.97 0.64 -5.45 16 25 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.11 3.91 7.40 -2.40 -0.02 3.89 16 27 H 0.12 4.58 5.48 -2.39 -0.01 4.56 16 28 H 0.12 2.08 7.19 -2.38 -0.02 2.06 16 29 H 0.06 1.95 7.37 -2.39 -0.02 1.94 16 30 H 0.10 3.35 7.58 -2.91 -0.02 3.33 16 31 H 0.12 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 35 H 0.12 1.78 6.44 -2.39 -0.02 1.76 16 36 H 0.15 1.04 8.07 -2.38 -0.02 1.02 16 37 H 0.17 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -83.90 337.11 6.04 -77.86 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.09 Total: 14.37 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 4.42 Total: -18.14 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -1.67 Total: -74.64 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 9 Polarization: -10.18 SS G_CDS: 1.37 Total: -8.80 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -83.90 6.04 -77.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174617963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.472 kcal (2) G-P(sol) polarization free energy of solvation -83.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds