Wall clock time and date at job start Tue Mar 31 2020 11:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 119.99998 * 2 1 4 4 H 1.48506 * 109.47152 * 240.00098 * 3 2 1 5 5 H 1.48495 * 109.47596 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47190 * 120.00110 * 3 2 1 7 7 C 1.37876 * 119.99515 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99548 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47218 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47410 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47124 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99724 * 179.97438 * 12 11 10 14 14 O 1.21581 * 120.00230 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99694 * 179.97438 * 13 12 11 16 16 N 1.40099 * 120.00105 * 0.02562 * 15 13 12 17 17 C 1.39739 * 119.99743 * 179.97438 * 16 15 13 18 18 C 1.38921 * 120.05233 * 359.97438 * 17 16 15 19 19 C 1.38107 * 119.98761 * 179.97438 * 18 17 16 20 20 C 1.38355 * 120.08352 * 0.02562 * 19 18 17 21 21 Cl 1.73604 * 119.94795 * 180.27355 * 20 19 18 22 22 C 1.38585 * 120.10041 * 0.02562 * 20 19 18 23 23 F 1.35102 * 119.99147 * 179.97438 * 22 20 19 24 24 C 1.38325 * 120.01243 * 359.97438 * 22 20 19 25 25 H 0.97000 * 119.99412 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47237 * 60.00705 * 9 7 2 27 27 H 1.09000 * 109.47203 * 300.00076 * 9 7 2 28 28 H 1.09005 * 109.46896 * 59.99941 * 10 9 7 29 29 H 1.08992 * 109.47189 * 300.00381 * 10 9 7 30 30 H 1.09005 * 109.47094 * 60.00118 * 11 10 9 31 31 H 1.09000 * 109.47152 * 300.00085 * 11 10 9 32 32 H 0.96998 * 120.00389 * 0.02562 * 12 11 10 33 33 H 0.97003 * 119.99776 * 179.97438 * 15 13 12 34 34 H 0.96993 * 120.00115 * 0.02562 * 16 15 13 35 35 H 1.08000 * 120.00905 * 0.04131 * 18 17 16 36 36 H 1.07995 * 119.96180 * 180.02562 * 19 18 17 37 37 H 1.08002 * 120.04153 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4321 -6.1006 0.0007 13 6 1.9828 -7.3713 0.0019 14 8 0.7874 -7.5934 0.0019 15 7 2.8586 -8.3957 0.0019 16 7 4.2360 -8.1398 0.0013 17 6 5.1440 -9.2019 0.0019 18 6 4.6820 -10.5121 0.0036 19 6 5.5806 -11.5609 0.0037 20 6 6.9410 -11.3086 0.0025 21 17 8.0674 -12.6296 -0.0046 22 6 7.4057 -10.0030 0.0019 23 9 8.7346 -9.7592 0.0013 24 6 6.5093 -8.9495 0.0018 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8904 30 1 0.8532 -5.0451 -0.8897 31 1 0.8538 -5.0446 0.8903 32 1 3.3858 -5.9235 0.0011 33 1 2.5352 -9.3103 0.0031 34 1 4.5594 -7.2253 0.0012 35 1 3.6204 -10.7105 0.0039 36 1 5.2210 -12.5792 0.0046 37 1 6.8710 -7.9318 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175462367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:31 Heat of formation + Delta-G solvation = -44.374158 kcal Electronic energy + Delta-G solvation = -22193.114162 eV Core-core repulsion = 18332.148215 eV Total energy + Delta-G solvation = -3860.965947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.01489 -41.50873 -40.27572 -37.85381 -37.07352 -36.91735 -35.18278 -33.32323 -32.66089 -31.55862 -29.12603 -28.50153 -25.24790 -24.25328 -23.45424 -22.34153 -22.01560 -19.98129 -19.81109 -18.50525 -17.87625 -17.71612 -17.30215 -17.03723 -16.79477 -16.59549 -16.24570 -16.10963 -15.77423 -15.36726 -14.91034 -14.53374 -14.42660 -14.24578 -13.75557 -13.69235 -13.42143 -13.33223 -12.77206 -12.72110 -12.55083 -12.40762 -12.08633 -11.90260 -11.83341 -11.66717 -11.40089 -11.19118 -10.53354 -10.51186 -10.14295 -9.94305 -8.43276 -8.18291 -6.29350 0.01000 0.12311 0.74267 1.14328 1.42975 1.45293 1.53090 1.90340 1.92305 2.43048 2.45687 3.09350 3.15696 3.54792 3.65221 3.92770 4.11698 4.11813 4.23709 4.44572 4.55848 4.72321 4.84214 4.93340 4.96366 4.96588 5.06214 5.16485 5.23146 5.34760 5.52945 5.54579 5.72904 5.85969 5.92253 6.23713 6.29854 6.88119 7.01594 7.32564 7.40144 8.93340 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.002020 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.457636 B =13855.842636 C =15135.547349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.146 3.854 12 N -0.726 5.726 13 C 0.710 3.290 14 O -0.617 6.617 15 N -0.522 5.522 16 N -0.532 5.532 17 C 0.251 3.749 18 C -0.194 4.194 19 C -0.024 4.024 20 C -0.143 4.143 21 Cl -0.066 7.066 22 C 0.148 3.852 23 F -0.134 7.134 24 C -0.213 4.213 25 H 0.263 0.737 26 H -0.007 1.007 27 H -0.007 1.007 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.407 0.593 33 H 0.441 0.559 34 H 0.435 0.565 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.063 -25.071 0.010 29.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.022 3.978 12 N -0.383 5.383 13 C 0.410 3.590 14 O -0.494 6.494 15 N -0.277 5.277 16 N -0.261 5.261 17 C 0.146 3.854 18 C -0.217 4.217 19 C -0.043 4.043 20 C -0.172 4.172 21 Cl -0.037 7.037 22 C 0.127 3.873 23 F -0.113 7.113 24 C -0.237 4.237 25 H 0.071 0.929 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.244 0.756 33 H 0.288 0.712 34 H 0.280 0.720 35 H 0.169 0.831 36 H 0.183 0.817 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 14.970 -25.046 0.007 29.179 hybrid contribution 0.773 1.023 0.003 1.282 sum 15.743 -24.023 0.011 28.721 Atomic orbital electron populations 1.70104 1.07872 1.27784 1.51659 1.26009 0.95743 1.03493 0.94915 0.85497 0.78190 0.78097 0.79228 1.19076 1.21373 1.19065 1.21653 0.93761 0.92003 1.50407 0.91476 1.18943 0.94486 0.92849 0.95231 1.21605 0.98503 0.91631 1.02273 1.21190 0.91239 0.84234 1.01155 1.45045 1.10791 1.03714 1.78715 1.15752 0.83973 0.81056 0.78265 1.91021 1.14387 1.83374 1.60602 1.44291 0.93519 1.09093 1.80801 1.43324 0.92323 1.07737 1.82764 1.17403 0.87499 0.87518 0.92983 1.20716 1.01253 0.89799 1.09955 1.20892 0.88781 1.01224 0.93413 1.20887 0.92492 0.87414 1.16435 1.98372 1.61481 1.46443 1.97401 1.17109 0.77635 0.92023 1.00576 1.91532 1.31098 1.95084 1.93538 1.20352 0.90105 1.00208 1.13082 0.92879 0.98814 0.98825 0.91209 0.91199 0.92830 0.92843 0.75612 0.71176 0.72049 0.83089 0.81714 0.81766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.54 -29.08 9.11 25.60 0.23 -28.85 16 8 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.10 -3.59 5.27 30.59 0.16 -3.43 16 11 C 0.15 4.65 5.67 86.38 0.49 5.14 16 12 N -0.73 -17.04 5.52 -478.54 -2.64 -19.68 16 13 C 0.71 17.79 8.68 179.05 1.55 19.34 16 14 O -0.62 -21.30 17.18 -3.97 -0.07 -21.36 16 15 N -0.52 -8.35 6.22 -184.75 -1.15 -9.49 16 16 N -0.53 -6.09 6.45 -51.36 -0.33 -6.42 16 17 C 0.25 2.81 6.72 38.19 0.26 3.06 16 18 C -0.19 -1.89 9.48 22.40 0.21 -1.68 16 19 C -0.02 -0.24 9.82 22.27 0.22 -0.02 16 20 C -0.14 -2.03 6.33 22.38 0.14 -1.89 16 21 Cl -0.07 -1.00 28.61 -2.72 -0.08 -1.08 16 22 C 0.15 2.24 7.27 22.37 0.16 2.40 16 23 F -0.13 -2.42 16.83 44.97 0.76 -1.66 16 24 C -0.21 -2.49 9.87 22.44 0.22 -2.27 16 25 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 26 H -0.01 -0.36 8.14 -2.39 -0.02 -0.37 16 27 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.41 6.70 6.39 -92.71 -0.59 6.10 16 33 H 0.44 5.66 6.70 -213.32 -1.43 4.23 16 34 H 0.43 3.76 6.71 -213.33 -1.43 2.33 16 35 H 0.15 0.94 6.20 -2.91 -0.02 0.92 16 36 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 37 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -70.36 340.63 0.75 -69.61 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -2.31 Total: 7.59 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.26 Total: -6.67 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -3.84 Total: -91.23 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.07 Total: -21.36 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.76 Total: -1.66 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -70.36 0.75 -69.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175462367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.232 kcal (2) G-P(sol) polarization free energy of solvation -70.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds