Wall clock time and date at job start Tue Mar 31 2020 10:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47066 * 2 1 4 4 N 1.46498 * 109.47016 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99766 * 274.99277 * 4 3 2 6 6 H 1.08003 * 119.99724 * 142.18102 * 5 4 3 7 7 C 1.38810 * 120.00312 * 322.18167 * 5 4 3 8 8 N 1.31618 * 119.99891 * 157.71459 * 7 5 4 9 9 Si 1.86797 * 119.99918 * 337.70990 * 7 5 4 10 10 H 1.48497 * 109.47157 * 95.32057 * 9 7 5 11 11 H 1.48503 * 109.47158 * 215.31801 * 9 7 5 12 12 H 1.48504 * 109.47296 * 335.32053 * 9 7 5 13 13 S 1.65602 * 120.00275 * 94.99688 * 4 3 2 14 14 O 1.42100 * 106.40077 * 341.35843 * 13 4 3 15 15 O 1.42097 * 106.40343 * 208.44149 * 13 4 3 16 16 C 1.76204 * 107.22007 * 94.89622 * 13 4 3 17 17 C 1.38300 * 119.91779 * 265.29728 * 16 13 4 18 18 C 1.38083 * 120.07456 * 180.27668 * 17 16 13 19 19 C 1.38973 * 119.92176 * 359.48644 * 18 17 16 20 20 S 1.76198 * 120.08267 * 180.27549 * 19 18 17 21 21 C 1.81395 * 103.00106 * 180.02562 * 20 19 18 22 22 C 1.38974 * 119.83982 * 0.25873 * 19 18 17 23 23 C 1.38085 * 119.91706 * 359.97438 * 22 19 18 24 24 H 1.09004 * 109.46719 * 60.00329 * 1 2 3 25 25 H 1.08993 * 109.46936 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47312 * 300.00648 * 1 2 3 27 27 H 1.08994 * 109.47702 * 239.99586 * 2 1 3 28 28 H 1.09006 * 109.46979 * 119.99196 * 2 1 3 29 29 H 1.09000 * 109.47584 * 59.99519 * 3 2 1 30 30 H 1.09006 * 109.46566 * 299.99449 * 3 2 1 31 31 H 0.97001 * 119.99643 * 180.02562 * 8 7 5 32 32 H 1.07993 * 119.96589 * 0.02562 * 17 16 13 33 33 H 1.08003 * 120.04188 * 179.76844 * 18 17 16 34 34 H 1.09001 * 109.47126 * 300.00212 * 21 20 19 35 35 H 1.08998 * 109.47580 * 59.99923 * 21 20 19 36 36 H 1.09004 * 109.47267 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.04267 * 180.02562 * 22 19 18 38 38 H 1.08003 * 119.95872 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.3395 1.1823 6 1 5.0990 0.7596 1.2307 7 6 3.7133 1.9803 2.3180 8 7 4.0754 1.5596 3.5114 9 14 2.5592 3.4398 2.1525 10 1 1.1535 2.9746 2.2659 11 1 2.8443 4.4210 3.2301 12 1 2.7623 4.0839 0.8299 13 16 4.3337 1.5672 -1.4277 14 8 3.4162 1.2195 -2.4556 15 8 5.5723 0.8986 -1.2328 16 6 4.7191 3.2708 -1.6602 17 6 3.8842 4.0694 -2.4205 18 6 4.1861 5.4035 -2.6095 19 6 5.3247 5.9460 -2.0259 20 16 5.7101 7.6495 -2.2584 21 6 7.2494 7.8514 -1.3201 22 6 6.1585 5.1417 -1.2583 23 6 5.8528 3.8073 -1.0775 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8935 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.6767 1.9565 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.7425 2.0072 4.3050 32 1 2.9973 3.6481 -2.8702 33 1 3.5357 6.0257 -3.2064 34 1 7.0728 7.6007 -0.2741 35 1 8.0132 7.1896 -1.7282 36 1 7.5868 8.8853 -1.3936 37 1 7.0440 5.5600 -0.8029 38 1 6.5005 3.1815 -0.4814 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180079483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:39 Heat of formation + Delta-G solvation = -62.050371 kcal Electronic energy + Delta-G solvation = -22715.452030 eV Core-core repulsion = 19389.683716 eV Total energy + Delta-G solvation = -3325.768314 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.02475 -38.33790 -37.94125 -36.56738 -34.62147 -33.17803 -32.56383 -32.19267 -29.77050 -27.65544 -25.73708 -24.43141 -23.79051 -22.66571 -20.31865 -19.43479 -18.88942 -18.50332 -17.94588 -17.40505 -16.67988 -15.98659 -15.79187 -15.73503 -15.58304 -14.99569 -14.87094 -14.83324 -14.67054 -14.38786 -14.00319 -13.94076 -13.67786 -13.38452 -13.20352 -12.96916 -12.86869 -12.71152 -12.46377 -12.42908 -12.34472 -12.06330 -11.95015 -11.73952 -11.47758 -11.29891 -11.15557 -10.81486 -10.15384 -10.02099 -8.60388 -8.58007 -6.13853 -0.43661 -0.16049 0.22401 0.39608 1.22542 1.30497 1.35878 1.43857 2.14560 2.19052 2.50108 2.81495 3.04136 3.50069 3.78674 3.80438 4.00882 4.18811 4.19333 4.20260 4.22162 4.36161 4.43026 4.53391 4.54709 4.67658 4.79884 4.85978 4.90296 4.96127 5.00551 5.12096 5.16989 5.25573 5.35637 5.55930 5.56800 5.71449 6.20653 6.92993 7.02266 8.52779 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.005468 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.641461 B = 5119.144026 C = 5697.751110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.108 3.892 4 N -0.842 5.842 5 C -0.283 4.283 6 H 0.082 0.918 7 C 0.042 3.958 8 N -0.873 5.873 9 Si 0.915 3.085 10 H -0.246 1.246 11 H -0.286 1.286 12 H -0.252 1.252 13 S 2.593 3.407 14 O -1.002 7.002 15 O -1.004 7.004 16 C -0.687 4.687 17 C -0.024 4.024 18 C -0.130 4.130 19 C -0.055 4.055 20 S -0.112 6.112 21 C -0.145 4.145 22 C -0.161 4.161 23 C -0.017 4.017 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.285 0.715 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 11.958 -7.055 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C -0.018 4.018 4 N -0.669 5.669 5 C -0.426 4.426 6 H 0.100 0.900 7 C -0.170 4.170 8 N -0.510 5.510 9 Si 0.739 3.261 10 H -0.171 1.171 11 H -0.213 1.213 12 H -0.176 1.176 13 S 2.695 3.305 14 O -0.992 6.992 15 O -0.994 6.994 16 C -0.774 4.774 17 C -0.045 4.045 18 C -0.154 4.154 19 C -0.168 4.168 20 S 0.132 5.868 21 C -0.313 4.313 22 C -0.185 4.185 23 C -0.038 4.038 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.153 0.847 37 H 0.172 0.828 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.936 12.312 -8.263 14.954 hybrid contribution 0.679 0.022 1.244 1.417 sum -1.257 12.335 -7.019 14.248 Atomic orbital electron populations 1.21707 0.93105 1.02941 1.02383 1.21846 0.97549 0.96107 1.02038 1.21727 0.79267 0.98785 1.01974 1.53501 1.12180 1.80718 1.20492 1.18787 1.10886 1.28185 0.84727 0.90049 1.26127 0.98302 0.98213 0.94325 1.69902 1.43432 1.38930 0.98716 0.86293 0.80322 0.80119 0.79319 1.17103 1.21290 1.17577 1.07358 0.73026 0.75995 0.74092 1.93359 1.63613 1.84029 1.58207 1.93377 1.45880 1.73877 1.86301 1.31647 1.05473 1.29179 1.11069 1.21064 0.97315 0.93390 0.92731 1.21143 0.97157 0.95192 1.01916 1.22270 0.97632 0.98553 0.98337 1.85347 1.32281 1.03216 1.66001 1.23887 0.95914 1.08622 1.02925 1.21526 1.01470 0.93835 1.01667 1.20934 0.93726 0.95642 0.93488 0.91409 0.90980 0.92456 0.92359 0.92318 0.92132 0.89357 0.90463 0.83201 0.82458 0.89095 0.88649 0.84678 0.82761 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.91 71.98 0.71 -3.24 16 2 C -0.14 -4.97 6.23 30.60 0.19 -4.78 16 3 C 0.11 4.31 4.32 86.38 0.37 4.68 16 4 N -0.84 -39.03 2.46 -343.45 -0.85 -39.87 16 5 C -0.28 -14.76 9.56 84.03 0.80 -13.96 16 6 H 0.08 4.77 7.65 -2.91 -0.02 4.75 16 7 C 0.04 2.10 5.32 84.86 0.45 2.55 16 8 N -0.87 -46.54 13.97 21.65 0.30 -46.24 16 9 Si 0.92 38.72 25.05 68.60 1.72 40.44 16 10 H -0.25 -9.47 6.68 99.48 0.66 -8.81 16 11 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 13 S 2.59 118.62 5.61 -56.49 -0.32 118.30 16 14 O -1.00 -45.56 15.97 -128.00 -2.04 -47.61 16 15 O -1.00 -52.31 16.44 -128.00 -2.10 -54.42 16 16 C -0.69 -27.68 5.97 22.30 0.13 -27.54 16 17 C -0.02 -0.83 9.52 22.25 0.21 -0.62 16 18 C -0.13 -3.87 9.79 22.41 0.22 -3.65 16 19 C -0.05 -1.59 6.11 22.62 0.14 -1.45 16 20 S -0.11 -2.41 22.56 -56.49 -1.27 -3.69 16 21 C -0.15 -2.10 9.15 113.37 1.04 -1.06 16 22 C -0.16 -4.98 9.36 22.41 0.21 -4.77 16 23 C -0.02 -0.64 9.51 22.25 0.21 -0.43 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 29 H 0.06 2.42 3.08 -2.39 -0.01 2.41 16 30 H 0.09 3.13 7.47 -2.38 -0.02 3.11 16 31 H 0.29 13.97 8.31 -92.71 -0.77 13.20 16 32 H 0.15 4.69 7.51 -2.91 -0.02 4.67 16 33 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 34 H 0.09 1.32 7.75 -2.39 -0.02 1.30 16 35 H 0.09 1.27 7.75 -2.39 -0.02 1.25 16 36 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.15 3.73 5.88 -2.91 -0.02 3.72 16 38 H 0.13 5.14 7.73 -2.91 -0.02 5.12 16 Total: -1.00 -64.64 337.78 1.15 -63.49 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 1.02 Total: 23.86 kcal Atomic # 6 Polarization: -58.97 SS G_CDS: 4.69 Total: -54.27 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -0.54 Total: -86.11 kcal Atomic # 8 Polarization: -97.88 SS G_CDS: -4.15 Total: -102.03 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 1.72 Total: 40.44 kcal Atomic # 16 Polarization: 116.21 SS G_CDS: -1.59 Total: 114.62 kcal Total: -64.64 1.15 -63.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180079483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.440 kcal (2) G-P(sol) polarization free energy of solvation -64.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds