Wall clock time and date at job start Tue Mar 31 2020 11:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99898 * 2 1 4 4 H 1.48500 * 109.47095 * 239.99796 * 3 2 1 5 5 H 1.48497 * 109.47378 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47182 * 120.00258 * 3 2 1 7 7 C 1.37880 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99737 * 183.12707 * 7 2 1 9 9 C 1.50693 * 120.00023 * 3.13206 * 7 2 1 10 10 C 1.53001 * 115.55341 * 324.97228 * 9 7 2 11 11 O 1.45203 * 109.46718 * 305.29320 * 10 9 7 12 12 C 1.34684 * 116.99456 * 184.86695 * 11 10 9 13 13 O 1.21420 * 120.00390 * 5.10042 * 12 11 10 14 14 C 1.48075 * 119.99537 * 185.10477 * 12 11 10 15 15 N 1.32781 * 119.72728 * 355.45567 * 14 12 11 16 16 C 1.31470 * 121.63855 * 180.33583 * 15 14 12 17 17 C 1.38629 * 120.90861 * 359.66454 * 16 15 14 18 18 C 1.38578 * 119.35239 * 0.02562 * 17 16 15 19 19 C 1.38629 * 118.49500 * 0.02562 * 18 17 16 20 20 C 1.50702 * 120.47343 * 179.97438 * 19 18 17 21 21 F 1.39895 * 109.46822 * 359.97438 * 20 19 18 22 22 F 1.39900 * 109.47015 * 239.99311 * 20 19 18 23 23 F 1.39901 * 109.47147 * 119.99485 * 20 19 18 24 24 C 1.52998 * 117.49948 * 110.64039 * 9 7 2 25 25 C 1.52998 * 117.49994 * 179.30108 * 9 7 2 26 26 H 0.97000 * 119.99739 * 5.00873 * 1 2 3 27 27 H 1.08996 * 109.47339 * 185.28800 * 10 9 7 28 28 H 1.09002 * 109.47283 * 65.28664 * 10 9 7 29 29 H 1.08008 * 119.54611 * 179.68071 * 16 15 14 30 30 H 1.07998 * 120.32135 * 180.02562 * 17 16 15 31 31 H 1.08007 * 120.75475 * 179.97438 * 18 17 16 32 32 H 1.08998 * 117.50277 * 214.99993 * 24 9 7 33 33 H 1.09007 * 117.50113 * 0.02562 * 24 9 7 34 34 H 1.08999 * 117.49794 * 359.97438 * 25 9 7 35 35 H 1.08997 * 117.50167 * 144.97345 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0833 -1.1948 0.0516 9 6 1.2527 -2.4982 -0.0702 10 6 -0.0922 -2.5250 0.6588 11 8 0.0991 -2.1269 2.0420 12 6 -0.9749 -2.1946 2.8518 13 8 -2.0171 -2.6622 2.4402 14 6 -0.8847 -1.6987 4.2441 15 7 0.2804 -1.2722 4.7170 16 6 0.4046 -0.8303 5.9490 17 6 -0.6862 -0.7870 6.8033 18 6 -1.9227 -1.2168 6.3486 19 6 -2.0241 -1.6787 5.0454 20 6 -3.3470 -2.1573 4.5050 21 9 -4.3254 -2.0426 5.4982 22 9 -3.2342 -3.4959 4.1142 23 9 -3.7091 -1.3781 3.4009 24 6 1.3743 -3.3148 -1.3583 25 6 2.0753 -3.7881 -0.0825 26 1 -0.4850 0.8369 -0.0733 27 1 -0.5040 -3.5336 0.6246 28 1 -0.7821 -1.8342 0.1741 29 1 1.3698 -0.4963 6.3002 30 1 -0.5735 -0.4219 7.8135 31 1 -2.7876 -1.1934 6.9950 32 1 0.4963 -3.8711 -1.6864 33 1 1.9985 -2.9090 -2.1545 34 1 3.1604 -3.6935 -0.0399 35 1 1.6587 -4.6557 0.4291 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183642802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:18 Heat of formation + Delta-G solvation = -172.834118 kcal Electronic energy + Delta-G solvation = -27104.418774 eV Core-core repulsion = 22653.792953 eV Total energy + Delta-G solvation = -4450.625821 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.16878 -48.71713 -48.57249 -41.94634 -40.64312 -38.58022 -36.90247 -34.32616 -34.18396 -33.24979 -28.81648 -27.68720 -27.28181 -25.89069 -23.81292 -23.05111 -22.39959 -21.10931 -19.81411 -19.52725 -19.48157 -18.82027 -18.63293 -17.82379 -17.36599 -16.98287 -16.58590 -16.27465 -15.67964 -15.49943 -15.46983 -15.18277 -15.03951 -15.01858 -14.85921 -14.75461 -14.58577 -14.04939 -13.86902 -13.78210 -13.35595 -12.97830 -12.90786 -12.74114 -12.33338 -12.15072 -11.92367 -11.49255 -11.40221 -11.33402 -10.91228 -10.80750 -10.68722 -10.58468 -10.17214 -8.00064 -6.18434 -0.89710 -0.16020 1.31456 1.42355 1.44295 1.48708 1.51507 1.67524 2.42902 2.46956 2.56712 2.93375 2.96965 3.13021 3.33248 3.50182 3.63144 3.72697 3.80862 4.11632 4.20072 4.26136 4.36873 4.55964 4.67837 4.76025 4.80994 4.89037 4.96505 5.16535 5.31913 5.41198 5.49897 5.63018 5.83524 6.31738 6.46332 6.75097 6.87589 7.45250 8.93688 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.005187 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.191452 B = 5396.396746 C = 6078.000380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.029 3.971 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.493 4.493 8 H 0.056 0.944 9 C 0.003 3.997 10 C 0.127 3.873 11 O -0.306 6.306 12 C 0.490 3.510 13 O -0.522 6.522 14 C 0.125 3.875 15 N -0.465 5.465 16 C 0.117 3.883 17 C -0.112 4.112 18 C -0.034 4.034 19 C -0.195 4.195 20 C 0.518 3.482 21 F -0.167 7.167 22 F -0.175 7.175 23 F -0.182 7.182 24 C -0.182 4.182 25 C -0.189 4.189 26 H 0.257 0.743 27 H 0.027 0.973 28 H 0.091 0.909 29 H 0.211 0.789 30 H 0.214 0.786 31 H 0.195 0.805 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 -0.687 17.740 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.171 4.171 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.530 4.530 8 H 0.075 0.925 9 C 0.003 3.997 10 C 0.053 3.947 11 O -0.218 6.218 12 C 0.333 3.667 13 O -0.413 6.413 14 C -0.012 4.012 15 N -0.176 5.176 16 C -0.042 4.042 17 C -0.131 4.131 18 C -0.059 4.059 19 C -0.199 4.199 20 C 0.463 3.537 21 F -0.148 7.148 22 F -0.156 7.156 23 F -0.163 7.163 24 C -0.220 4.220 25 C -0.226 4.226 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.109 0.891 29 H 0.227 0.773 30 H 0.231 0.769 31 H 0.212 0.788 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.291 -0.756 17.021 17.353 hybrid contribution -0.748 0.506 -0.409 0.991 sum -4.039 -0.250 16.612 17.098 Atomic orbital electron populations 1.69938 1.07079 1.26950 1.50689 1.25641 0.95550 1.02133 0.93727 0.85640 0.78356 0.78918 0.78914 1.19330 1.21281 1.19628 1.20642 0.92414 0.89707 1.50220 0.92530 1.19085 0.93001 0.91460 0.96168 1.22764 0.99317 0.96092 0.76484 1.86630 1.35636 1.76378 1.23205 1.21401 0.82353 0.75971 0.86933 1.90816 1.30535 1.43368 1.76570 1.19787 0.90677 0.99298 0.91404 1.67892 1.23690 1.08325 1.17698 1.24069 1.02399 0.91132 0.86578 1.23108 0.90498 0.95683 1.03782 1.22020 1.01783 0.91183 0.90928 1.21112 0.92110 1.07849 0.98843 1.17896 0.84573 0.75764 0.75483 1.93157 1.64996 1.95819 1.60821 1.93213 1.96105 1.35009 1.91276 1.93222 1.92722 1.74919 1.55464 1.23001 1.02128 1.04889 0.91969 1.22963 0.98824 0.98743 1.02114 0.93317 0.95468 0.89135 0.77276 0.76889 0.78762 0.89981 0.89432 0.89498 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.63 10.19 21.45 0.22 -52.41 16 2 C 0.03 1.60 5.35 84.65 0.45 2.06 16 3 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.49 -27.46 8.80 25.60 0.23 -27.23 16 8 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 9 C 0.00 0.17 2.20 -52.93 -0.12 0.05 16 10 C 0.13 6.73 4.45 71.98 0.32 7.05 16 11 O -0.31 -16.19 9.61 -55.93 -0.54 -16.72 16 12 C 0.49 23.36 7.74 70.43 0.54 23.91 16 13 O -0.52 -25.77 11.00 20.09 0.22 -25.55 16 14 C 0.13 4.75 6.73 41.87 0.28 5.03 16 15 N -0.46 -15.93 10.12 -184.93 -1.87 -17.80 16 16 C 0.12 2.32 11.18 84.84 0.95 3.26 16 17 C -0.11 -1.34 10.12 22.44 0.23 -1.12 16 18 C -0.03 -0.59 9.53 22.44 0.21 -0.38 16 19 C -0.19 -5.80 5.41 -19.51 -0.11 -5.91 16 20 C 0.52 17.01 2.78 71.24 0.20 17.21 16 21 F -0.17 -4.22 16.05 44.97 0.72 -3.50 16 22 F -0.17 -6.50 14.82 44.97 0.67 -5.83 16 23 F -0.18 -7.19 15.22 44.97 0.68 -6.50 16 24 C -0.18 -8.12 9.96 30.62 0.30 -7.82 16 25 C -0.19 -8.28 9.93 30.62 0.30 -7.98 16 26 H 0.26 14.48 8.32 -92.71 -0.77 13.71 16 27 H 0.03 1.37 7.92 -2.39 -0.02 1.35 16 28 H 0.09 5.33 5.89 -2.39 -0.01 5.31 16 29 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.21 0.08 8.06 -2.91 -0.02 0.05 16 31 H 0.20 1.83 7.26 -2.91 -0.02 1.81 16 32 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 33 H 0.09 3.81 8.14 -2.38 -0.02 3.79 16 34 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 35 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -74.39 317.95 7.08 -67.32 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.15 Total: 6.81 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 3.80 Total: 8.14 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -1.65 Total: -70.22 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -0.32 Total: -42.28 kcal Atomic # 9 Polarization: -17.91 SS G_CDS: 2.07 Total: -15.84 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -74.39 7.08 -67.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183642802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.517 kcal (2) G-P(sol) polarization free energy of solvation -74.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds