Wall clock time and date at job start Tue Mar 31 2020 10:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.35940 * 116.99923 * 180.02562 * 17 16 14 19 19 C 1.38733 * 120.02360 * 180.02562 * 18 17 16 20 20 C 1.38140 * 119.99323 * 180.02562 * 19 18 17 21 21 C 1.38440 * 120.04559 * 359.97438 * 20 19 18 22 22 F 1.35095 * 119.97798 * 179.97438 * 21 20 19 23 23 C 1.38548 * 120.04506 * 359.97438 * 21 20 19 24 24 Cl 1.73604 * 119.99239 * 180.02562 * 23 21 20 25 25 C 1.38269 * 120.00992 * 359.73292 * 23 21 20 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.08004 * 119.99960 * 0.02562 * 19 18 17 36 36 H 1.08004 * 119.98201 * 180.02562 * 20 19 18 37 37 H 1.07996 * 120.02143 * 180.27413 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 8 -1.2589 3.8468 -2.5793 18 6 -1.7612 4.4852 -3.6693 19 6 -3.0433 5.0141 -3.6345 20 6 -3.5533 5.6623 -4.7427 21 6 -2.7856 5.7849 -5.8882 22 9 -3.2859 6.4185 -6.9714 23 6 -1.5047 5.2582 -5.9246 24 17 -0.5431 5.4134 -7.3616 25 6 -0.9899 4.6144 -4.8145 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8116 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 -3.6425 4.9192 -2.7409 36 1 -4.5512 6.0744 -4.7152 37 1 0.0102 4.2077 -4.8411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183933467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:38 Heat of formation + Delta-G solvation = -122.304029 kcal Electronic energy + Delta-G solvation = -23243.406046 eV Core-core repulsion = 19346.768055 eV Total energy + Delta-G solvation = -3896.637991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.96987 -41.56466 -40.52285 -38.57736 -37.50736 -36.93522 -34.50927 -33.33789 -32.21150 -31.04586 -29.70724 -28.36081 -24.57666 -24.19384 -23.54087 -22.27710 -21.28049 -19.90843 -19.65091 -18.54309 -18.35351 -17.57806 -17.39317 -17.03543 -16.76547 -16.32442 -15.97543 -15.58539 -15.25200 -15.02884 -14.61198 -14.52912 -14.38630 -14.25008 -14.11555 -13.85002 -13.69941 -13.56048 -12.88457 -12.64772 -12.50143 -12.33343 -12.28438 -12.10595 -11.81458 -11.77380 -11.56891 -11.22866 -10.78305 -10.40371 -10.17731 -9.85256 -9.29314 -8.80755 -6.40073 -0.17974 -0.03522 0.83639 1.47945 1.49914 1.55243 1.64188 1.71216 2.29616 2.43236 2.73357 2.93935 3.03141 3.53492 3.62091 3.79769 3.91744 4.03750 4.07250 4.32199 4.39687 4.40940 4.43071 4.55467 4.71615 4.85981 4.95580 4.97730 5.10713 5.21236 5.28905 5.40451 5.55218 5.63112 5.70086 6.03921 6.10211 6.55548 6.79099 7.26645 7.38747 8.56641 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.002706 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.807581 B =10344.372005 C =10986.416018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.129 4.129 3 C 0.257 3.743 4 H 0.022 0.978 5 C -0.626 4.626 6 H 0.046 0.954 7 C 0.008 3.992 8 N -0.916 5.916 9 Si 1.060 2.940 10 H -0.283 1.283 11 H -0.274 1.274 12 H -0.255 1.255 13 N -0.696 5.696 14 C 0.502 3.498 15 O -0.566 6.566 16 C 0.042 3.958 17 O -0.301 6.301 18 C 0.127 3.873 19 C -0.117 4.117 20 C -0.088 4.088 21 C 0.055 3.945 22 F -0.135 7.135 23 C -0.042 4.042 24 Cl -0.048 7.048 25 C -0.178 4.178 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.263 0.737 32 H 0.407 0.593 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.163 0.837 36 H 0.181 0.819 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.242 8.914 -15.785 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.168 4.168 3 C 0.152 3.848 4 H 0.039 0.961 5 C -0.663 4.663 6 H 0.064 0.936 7 C -0.195 4.195 8 N -0.549 5.549 9 Si 0.882 3.118 10 H -0.208 1.208 11 H -0.199 1.199 12 H -0.180 1.180 13 N -0.347 5.347 14 C 0.287 3.713 15 O -0.445 6.445 16 C -0.035 4.035 17 O -0.213 6.213 18 C 0.081 3.919 19 C -0.136 4.136 20 C -0.107 4.107 21 C 0.035 3.965 22 F -0.114 7.114 23 C -0.070 4.070 24 Cl -0.019 7.019 25 C -0.198 4.198 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.243 0.757 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.180 0.820 36 H 0.198 0.802 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.653 8.595 -13.492 23.092 hybrid contribution 1.035 0.353 -2.443 2.676 sum -15.618 8.948 -15.935 24.040 Atomic orbital electron populations 1.21776 0.95611 1.00351 1.01387 1.22136 0.95146 0.98378 1.01144 1.18729 0.93550 0.89490 0.83011 0.96052 1.22143 0.91339 1.48792 1.04069 0.93584 1.26601 0.96688 0.91331 1.04907 1.70960 1.15063 1.38758 1.30142 0.83810 0.75867 0.78315 0.73765 1.20809 1.19944 1.17968 1.45935 1.14936 1.56180 1.17643 1.20528 0.82188 0.79031 0.89519 1.90704 1.51308 1.59937 1.42572 1.22685 0.83527 1.00829 0.96508 1.86196 1.30770 1.69310 1.35030 1.19124 0.93737 0.93402 0.85664 1.20684 0.93291 0.99054 1.00530 1.21201 1.01485 0.98504 0.89484 1.17509 0.92248 1.00748 0.86014 1.91515 1.87236 1.79780 1.52853 1.20814 0.92179 1.03346 0.90682 1.98400 1.70590 1.96570 1.36353 1.21178 1.02673 1.04546 0.91358 0.94356 0.93102 0.92607 0.92460 0.93165 0.92782 0.75735 0.86255 0.85857 0.81988 0.80165 0.81826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 8.53 71.98 0.61 -4.39 16 2 C -0.13 -5.39 5.37 30.60 0.16 -5.22 16 3 C 0.26 11.47 1.84 44.25 0.08 11.55 16 4 H 0.02 1.07 6.12 -2.39 -0.01 1.05 16 5 C -0.63 -32.36 8.92 25.60 0.23 -32.13 16 6 H 0.05 2.49 7.96 -2.91 -0.02 2.47 16 7 C 0.01 0.44 5.15 84.66 0.44 0.87 16 8 N -0.92 -53.38 13.70 21.45 0.29 -53.09 16 9 Si 1.06 48.97 26.56 68.60 1.82 50.79 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.26 -10.97 6.34 99.48 0.63 -10.34 16 13 N -0.70 -24.63 5.03 -446.10 -2.24 -26.88 16 14 C 0.50 16.61 6.51 87.66 0.57 17.18 16 15 O -0.57 -23.47 13.64 16.00 0.22 -23.25 16 16 C 0.04 0.92 5.22 71.24 0.37 1.30 16 17 O -0.30 -7.44 9.67 -73.84 -0.71 -8.16 16 18 C 0.13 2.48 6.69 22.49 0.15 2.63 16 19 C -0.12 -1.88 9.98 22.36 0.22 -1.65 16 20 C -0.09 -1.21 10.02 22.29 0.22 -0.98 16 21 C 0.06 0.97 7.27 22.39 0.16 1.13 16 22 F -0.14 -2.59 16.83 44.97 0.76 -1.83 16 23 C -0.04 -0.77 6.32 22.35 0.14 -0.63 16 24 Cl -0.05 -0.87 28.61 -2.72 -0.08 -0.95 16 25 C -0.18 -3.07 8.82 22.38 0.20 -2.87 16 26 H 0.04 1.52 7.89 -2.39 -0.02 1.50 16 27 H 0.05 1.85 5.63 -2.39 -0.01 1.84 16 28 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 2.23 5.77 -2.39 -0.01 2.21 16 31 H 0.26 15.25 8.73 -92.71 -0.81 14.44 16 32 H 0.41 12.15 8.53 -92.71 -0.79 11.35 16 33 H 0.12 1.97 7.65 -2.39 -0.02 1.96 16 34 H 0.12 1.91 7.67 -2.39 -0.02 1.89 16 35 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.18 1.37 8.06 -2.91 -0.02 1.34 16 37 H 0.16 2.21 6.30 -2.91 -0.02 2.19 16 Total: -1.00 -66.17 329.87 3.84 -62.33 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.22 Total: 14.25 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 3.57 Total: -13.22 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -1.95 Total: -79.96 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.50 Total: -31.40 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.76 Total: -1.83 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.82 Total: 50.79 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -66.17 3.84 -62.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183933467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.976 kcal (2) G-P(sol) polarization free energy of solvation -66.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds