Wall clock time and date at job start Tue Mar 31 2020 10:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46800 * 2 1 4 4 H 1.08995 * 109.47046 * 178.25985 * 3 2 1 5 5 C 1.50706 * 109.47134 * 298.25897 * 3 2 1 6 6 H 1.08001 * 119.99916 * 119.99846 * 5 3 2 7 7 C 1.37881 * 119.99825 * 300.00108 * 5 3 2 8 8 N 1.31510 * 119.99757 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 119.99937 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47033 * 90.00295 * 9 7 5 11 11 H 1.48500 * 109.47220 * 209.99861 * 9 7 5 12 12 H 1.48498 * 109.47581 * 330.00559 * 9 7 5 13 13 N 1.46500 * 109.47192 * 58.25581 * 3 2 1 14 14 S 1.65604 * 119.99769 * 96.25154 * 13 3 2 15 15 O 1.42102 * 106.40178 * 311.69511 * 14 13 3 16 16 O 1.42103 * 106.40249 * 178.77754 * 14 13 3 17 17 C 1.76197 * 107.22020 * 65.23751 * 14 13 3 18 18 C 1.38301 * 119.92148 * 89.99964 * 17 14 13 19 19 C 1.38077 * 120.08118 * 179.71997 * 18 17 14 20 20 C 1.38980 * 119.91691 * 0.26195 * 19 18 17 21 21 S 1.76207 * 120.07625 * 180.02562 * 20 19 18 22 22 C 1.81398 * 102.99742 * 179.97438 * 21 20 19 23 23 C 1.38971 * 119.83973 * 359.97438 * 20 19 18 24 24 C 1.38081 * 119.92085 * 0.02562 * 23 20 19 25 25 H 1.09008 * 109.46618 * 175.69534 * 1 2 3 26 26 H 1.09004 * 109.47144 * 295.68425 * 1 2 3 27 27 H 1.08998 * 109.47350 * 55.69367 * 1 2 3 28 28 H 1.08993 * 109.46821 * 240.00170 * 2 1 3 29 29 H 1.08997 * 109.46849 * 119.99955 * 2 1 3 30 30 H 0.96999 * 120.00430 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00310 * 276.24628 * 13 3 2 32 32 H 1.07997 * 119.95923 * 0.02562 * 18 17 14 33 33 H 1.07997 * 120.03927 * 180.27391 * 19 18 17 34 34 H 1.08998 * 109.47422 * 300.00287 * 22 21 20 35 35 H 1.09004 * 109.47046 * 59.99956 * 22 21 20 36 36 H 1.08997 * 109.47220 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.03848 * 180.02562 * 23 20 19 38 38 H 1.08003 * 119.95763 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 0.0312 5 6 1.5731 2.1403 -1.2515 6 1 0.9497 3.0193 -1.1791 7 6 1.9419 1.6566 -2.4889 8 7 1.5350 2.2659 -3.5810 9 14 3.0207 0.1369 -2.6140 10 1 2.1641 -1.0748 -2.6715 11 1 3.8480 0.2170 -3.8446 12 1 3.9076 0.0600 -1.4254 13 7 1.5176 2.1451 1.1746 14 16 2.4403 2.2678 2.5442 15 8 2.9326 0.9625 2.8147 16 8 1.6757 3.0189 3.4773 17 6 3.8431 3.2550 2.1414 18 6 3.7896 4.6277 2.3014 19 6 4.8889 5.4039 1.9922 20 6 6.0483 4.8046 1.5146 21 16 7.4538 5.7911 1.1193 22 6 8.6670 4.5657 0.5562 23 6 6.0967 3.4255 1.3504 24 6 4.9935 2.6557 1.6617 25 1 -0.3633 -1.0249 -0.0771 26 1 -0.3633 0.4454 0.9262 27 1 -0.3634 0.5792 -0.8489 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7947 1.9259 -4.4516 31 1 0.6313 2.5385 1.1501 32 1 2.8885 5.0926 2.6733 33 1 4.8478 6.4753 2.1216 34 1 8.8658 3.8557 1.3589 35 1 8.2714 4.0341 -0.3094 36 1 9.5924 5.0709 0.2800 37 1 6.9962 2.9564 0.9798 38 1 5.0304 1.5839 1.5340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186436219.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:49 Heat of formation + Delta-G solvation = -48.686964 kcal Electronic energy + Delta-G solvation = -22518.320239 eV Core-core repulsion = 19193.131406 eV Total energy + Delta-G solvation = -3325.188833 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.01901 -36.95919 -36.27880 -35.45363 -32.27877 -31.60401 -31.20440 -30.82168 -29.09226 -26.91949 -23.47350 -23.38522 -22.77889 -20.51749 -19.09650 -18.09026 -17.57779 -17.00718 -16.22784 -15.85310 -15.40593 -15.03143 -14.77026 -14.52193 -14.10870 -13.85614 -13.70683 -13.38249 -13.21703 -13.05918 -13.05324 -12.58237 -12.35823 -12.06394 -11.72545 -11.66219 -11.42408 -11.29139 -11.01660 -10.77608 -10.71326 -10.66956 -10.38002 -10.15317 -10.08822 -9.51492 -9.36159 -9.07087 -8.80745 -8.49394 -7.71734 -6.23470 -4.24392 0.63134 0.94476 1.25840 1.30391 2.11307 3.16921 3.25431 3.27967 3.29483 3.64748 4.16799 4.25337 4.54081 4.77072 4.79482 4.79911 4.89577 5.08348 5.21597 5.35354 5.46385 5.55829 5.85247 5.89756 5.92586 5.95270 6.06977 6.12776 6.18731 6.29368 6.67089 6.74624 6.78131 6.92376 7.08653 7.22032 7.39296 7.81510 8.34566 8.79316 9.36154 10.88814 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.012455 B = 0.005675 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.575796 B = 4932.557294 C = 6285.330499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 C 0.251 3.749 4 H 0.038 0.962 5 C -0.521 4.521 6 H 0.084 0.916 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.295 1.295 12 H -0.264 1.264 13 N -1.089 6.089 14 S 2.690 3.310 15 O -0.964 6.964 16 O -0.975 6.975 17 C -0.672 4.672 18 C 0.004 3.996 19 C -0.124 4.124 20 C -0.036 4.036 21 S -0.109 6.109 22 C -0.148 4.148 23 C -0.157 4.157 24 C 0.005 3.995 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.266 0.734 31 H 0.415 0.585 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.017 3.340 8.933 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.186 4.186 3 C 0.145 3.855 4 H 0.055 0.945 5 C -0.560 4.560 6 H 0.102 0.898 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.222 1.222 12 H -0.189 1.189 13 N -0.850 5.850 14 S 2.779 3.221 15 O -0.954 6.954 16 O -0.966 6.966 17 C -0.761 4.761 18 C -0.018 4.018 19 C -0.149 4.149 20 C -0.150 4.150 21 S 0.134 5.866 22 C -0.317 4.317 23 C -0.182 4.182 24 C -0.016 4.016 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.251 0.749 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.356 4.129 9.560 14.687 hybrid contribution 0.565 -1.600 -1.001 1.970 sum 10.922 2.529 8.560 14.105 Atomic orbital electron populations 1.21579 0.95708 0.99742 1.02234 1.22293 0.97488 0.98831 0.99960 1.18924 0.93607 0.88552 0.84426 0.94472 1.21031 1.33472 1.13551 0.87906 0.89791 1.24852 0.95411 0.96666 0.95618 1.69860 1.44868 1.40186 0.97817 0.87043 0.81120 0.83955 0.77371 1.19939 1.22197 1.18946 1.55271 1.28562 1.70206 1.30960 1.01844 0.73354 0.73874 0.73038 1.93560 1.81392 1.36736 1.83704 1.93538 1.69489 1.73120 1.60412 1.31122 1.19044 1.08595 1.17290 1.20816 0.98044 0.91440 0.91469 1.20811 0.91926 1.00155 1.01964 1.22011 0.97547 0.96410 0.98993 1.85472 1.06791 1.14003 1.80304 1.23739 1.00845 1.02024 1.05081 1.21217 1.00052 0.92302 1.04594 1.20843 0.90684 1.00263 0.89785 0.94845 0.93767 0.90757 0.92864 0.92911 0.92354 0.74941 0.83750 0.84685 0.89480 0.89212 0.87212 0.85134 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.51 37.16 0.35 -2.25 16 2 C -0.15 -3.08 5.39 -26.73 -0.14 -3.22 16 3 C 0.25 5.44 2.06 -69.08 -0.14 5.30 16 4 H 0.04 0.81 6.30 -51.93 -0.33 0.49 16 5 C -0.52 -13.14 8.10 -34.44 -0.28 -13.42 16 6 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 7 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.89 -25.39 13.96 55.43 0.77 -24.61 16 9 Si 0.88 20.44 24.39 -169.99 -4.15 16.30 16 10 H -0.27 -6.24 6.85 56.52 0.39 -5.85 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.26 -5.84 6.53 56.52 0.37 -5.47 16 13 N -1.09 -20.30 4.74 -5.88 -0.03 -20.33 16 14 S 2.69 47.51 5.64 -107.50 -0.61 46.90 16 15 O -0.96 -18.80 16.69 -57.17 -0.95 -19.76 16 16 O -0.98 -18.09 17.27 -57.17 -0.99 -19.08 16 17 C -0.67 -11.11 5.85 -39.53 -0.23 -11.34 16 18 C 0.00 0.05 9.51 -39.62 -0.38 -0.32 16 19 C -0.12 -1.72 9.79 -39.37 -0.39 -2.11 16 20 C -0.04 -0.50 6.11 -39.04 -0.24 -0.74 16 21 S -0.11 -1.22 22.56 -107.50 -2.43 -3.65 16 22 C -0.15 -1.19 9.15 101.05 0.92 -0.27 16 23 C -0.16 -2.21 9.36 -39.37 -0.37 -2.58 16 24 C 0.01 0.09 8.89 -39.62 -0.35 -0.27 16 25 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.04 0.76 7.59 -51.93 -0.39 0.37 16 27 H 0.07 1.55 7.13 -51.93 -0.37 1.18 16 28 H 0.05 1.17 3.24 -51.93 -0.17 1.00 16 29 H 0.05 1.05 7.80 -51.93 -0.41 0.64 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.42 7.11 8.68 -34.47 -0.30 6.81 16 32 H 0.14 1.91 7.61 -52.49 -0.40 1.51 16 33 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.09 0.62 7.75 -51.93 -0.40 0.22 16 35 H 0.09 0.74 7.75 -51.92 -0.40 0.33 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.13 1.47 5.88 -52.48 -0.31 1.17 16 38 H 0.14 2.15 7.62 -52.48 -0.40 1.75 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -31.16 332.97 -9.44 -40.61 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -4.75 Total: 7.82 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -1.34 Total: -29.23 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.75 Total: -44.94 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.94 Total: -38.84 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.15 Total: 16.30 kcal Atomic # 16 Polarization: 46.28 SS G_CDS: -3.03 Total: 43.25 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.16 -9.44 -40.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186436219.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.080 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds