Wall clock time and date at job start Tue Mar 31 2020 10:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46800 * 2 1 4 4 H 1.08995 * 109.47046 * 178.25985 * 3 2 1 5 5 C 1.50706 * 109.47134 * 298.25897 * 3 2 1 6 6 H 1.08001 * 119.99916 * 119.99846 * 5 3 2 7 7 C 1.37881 * 119.99825 * 300.00108 * 5 3 2 8 8 N 1.31510 * 119.99757 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 119.99937 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47033 * 90.00295 * 9 7 5 11 11 H 1.48500 * 109.47220 * 209.99861 * 9 7 5 12 12 H 1.48498 * 109.47581 * 330.00559 * 9 7 5 13 13 N 1.46500 * 109.47192 * 58.25581 * 3 2 1 14 14 S 1.65604 * 119.99769 * 96.25154 * 13 3 2 15 15 O 1.42102 * 106.40178 * 311.69511 * 14 13 3 16 16 O 1.42103 * 106.40249 * 178.77754 * 14 13 3 17 17 C 1.76197 * 107.22020 * 65.23751 * 14 13 3 18 18 C 1.38301 * 119.92148 * 89.99964 * 17 14 13 19 19 C 1.38077 * 120.08118 * 179.71997 * 18 17 14 20 20 C 1.38980 * 119.91691 * 0.26195 * 19 18 17 21 21 S 1.76207 * 120.07625 * 180.02562 * 20 19 18 22 22 C 1.81398 * 102.99742 * 179.97438 * 21 20 19 23 23 C 1.38971 * 119.83973 * 359.97438 * 20 19 18 24 24 C 1.38081 * 119.92085 * 0.02562 * 23 20 19 25 25 H 1.09008 * 109.46618 * 175.69534 * 1 2 3 26 26 H 1.09004 * 109.47144 * 295.68425 * 1 2 3 27 27 H 1.08998 * 109.47350 * 55.69367 * 1 2 3 28 28 H 1.08993 * 109.46821 * 240.00170 * 2 1 3 29 29 H 1.08997 * 109.46849 * 119.99955 * 2 1 3 30 30 H 0.96999 * 120.00430 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00310 * 276.24628 * 13 3 2 32 32 H 1.07997 * 119.95923 * 0.02562 * 18 17 14 33 33 H 1.07997 * 120.03927 * 180.27391 * 19 18 17 34 34 H 1.08998 * 109.47422 * 300.00287 * 22 21 20 35 35 H 1.09004 * 109.47046 * 59.99956 * 22 21 20 36 36 H 1.08997 * 109.47220 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.03848 * 180.02562 * 23 20 19 38 38 H 1.08003 * 119.95763 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 0.0312 5 6 1.5731 2.1403 -1.2515 6 1 0.9497 3.0193 -1.1791 7 6 1.9419 1.6566 -2.4889 8 7 1.5350 2.2659 -3.5810 9 14 3.0207 0.1369 -2.6140 10 1 2.1641 -1.0748 -2.6715 11 1 3.8480 0.2170 -3.8446 12 1 3.9076 0.0600 -1.4254 13 7 1.5176 2.1451 1.1746 14 16 2.4403 2.2678 2.5442 15 8 2.9326 0.9625 2.8147 16 8 1.6757 3.0189 3.4773 17 6 3.8431 3.2550 2.1414 18 6 3.7896 4.6277 2.3014 19 6 4.8889 5.4039 1.9922 20 6 6.0483 4.8046 1.5146 21 16 7.4538 5.7911 1.1193 22 6 8.6670 4.5657 0.5562 23 6 6.0967 3.4255 1.3504 24 6 4.9935 2.6557 1.6617 25 1 -0.3633 -1.0249 -0.0771 26 1 -0.3633 0.4454 0.9262 27 1 -0.3634 0.5792 -0.8489 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7947 1.9259 -4.4516 31 1 0.6313 2.5385 1.1501 32 1 2.8885 5.0926 2.6733 33 1 4.8478 6.4753 2.1216 34 1 8.8658 3.8557 1.3589 35 1 8.2714 4.0341 -0.3094 36 1 9.5924 5.0709 0.2800 37 1 6.9962 2.9564 0.9798 38 1 5.0304 1.5839 1.5340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186436219.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:48 Heat of formation + Delta-G solvation = -70.159275 kcal Electronic energy + Delta-G solvation = -22519.251349 eV Core-core repulsion = 19193.131406 eV Total energy + Delta-G solvation = -3326.119943 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.11508 -38.48500 -37.90504 -36.92465 -34.23896 -32.68815 -32.42199 -32.27988 -29.77758 -28.74617 -25.17267 -24.61518 -23.88063 -22.22428 -20.47161 -19.27403 -19.10384 -18.26405 -17.93799 -17.48208 -16.81954 -16.04155 -15.95455 -15.80463 -15.40919 -15.07592 -14.88838 -14.86817 -14.71029 -14.48936 -14.04979 -13.98846 -13.71645 -13.27727 -13.19373 -13.12230 -12.99145 -12.60777 -12.51381 -12.45998 -12.36201 -11.96834 -11.85639 -11.39952 -11.31358 -11.24042 -11.11448 -10.73716 -10.20633 -10.15477 -8.62728 -8.28119 -6.31431 -0.62033 -0.34512 0.19503 0.38020 1.30236 1.33151 1.37082 1.45116 2.01097 2.31764 2.35213 2.79413 3.07400 3.31276 3.68546 3.76402 4.14158 4.20495 4.20706 4.21902 4.27531 4.34504 4.46996 4.55811 4.68664 4.78799 4.82478 4.84958 4.98360 4.99621 5.04578 5.19456 5.29045 5.38608 5.50539 5.64925 5.66923 6.26621 6.33469 6.73818 7.32332 8.87423 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.012455 B = 0.005675 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.575796 B = 4932.557294 C = 6285.330499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.152 4.152 3 C 0.254 3.746 4 H 0.042 0.958 5 C -0.510 4.510 6 H 0.053 0.947 7 C 0.028 3.972 8 N -0.938 5.938 9 Si 0.920 3.080 10 H -0.264 1.264 11 H -0.298 1.298 12 H -0.242 1.242 13 N -1.091 6.091 14 S 2.708 3.292 15 O -0.982 6.982 16 O -0.986 6.986 17 C -0.690 4.690 18 C -0.008 4.008 19 C -0.131 4.131 20 C -0.043 4.043 21 S -0.111 6.111 22 C -0.147 4.147 23 C -0.162 4.162 24 C -0.014 4.014 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.266 0.734 31 H 0.420 0.580 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.157 0.843 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.963 2.899 9.770 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.191 4.191 3 C 0.147 3.853 4 H 0.059 0.941 5 C -0.549 4.549 6 H 0.072 0.928 7 C -0.171 4.171 8 N -0.578 5.578 9 Si 0.747 3.253 10 H -0.190 1.190 11 H -0.226 1.226 12 H -0.166 1.166 13 N -0.851 5.851 14 S 2.799 3.201 15 O -0.972 6.972 16 O -0.976 6.976 17 C -0.781 4.781 18 C -0.030 4.030 19 C -0.156 4.156 20 C -0.157 4.157 21 S 0.133 5.867 22 C -0.315 4.315 23 C -0.187 4.187 24 C -0.035 4.035 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.256 0.744 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.151 0.849 37 H 0.175 0.825 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.282 3.677 10.429 16.527 hybrid contribution 0.046 -1.316 -1.226 1.799 sum 12.328 2.362 9.203 15.565 Atomic orbital electron populations 1.21552 0.94660 1.00888 1.02018 1.22328 0.98600 0.97952 1.00239 1.18742 0.93807 0.89049 0.83726 0.94066 1.21196 1.31857 1.12368 0.89463 0.92840 1.25536 0.96844 0.99375 0.95350 1.69992 1.47112 1.42255 0.98406 0.86285 0.80065 0.81000 0.77912 1.19040 1.22590 1.16615 1.55175 1.29279 1.70351 1.30295 1.01147 0.73182 0.73414 0.72335 1.93525 1.81624 1.38144 1.83931 1.93518 1.70253 1.73242 1.60621 1.30852 1.18679 1.09077 1.19495 1.21065 0.99125 0.91144 0.91649 1.21138 0.91695 1.01264 1.01477 1.22365 0.98623 0.96848 0.97857 1.85523 1.06456 1.14904 1.79796 1.23913 1.00502 1.01620 1.05456 1.21537 1.00475 0.92519 1.04120 1.21046 0.91225 1.00785 0.90444 0.92698 0.92199 0.93141 0.93580 0.91476 0.92484 0.74407 0.82679 0.82551 0.88204 0.89075 0.84854 0.82516 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.51 71.98 0.68 -4.28 16 2 C -0.15 -6.13 5.39 30.60 0.16 -5.97 16 3 C 0.25 10.80 2.06 44.25 0.09 10.89 16 4 H 0.04 1.75 6.30 -2.39 -0.02 1.73 16 5 C -0.51 -26.01 8.10 25.60 0.21 -25.80 16 6 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 7 C 0.03 1.50 5.45 84.66 0.46 1.97 16 8 N -0.94 -54.72 13.96 21.45 0.30 -54.42 16 9 Si 0.92 41.32 24.39 68.60 1.67 43.00 16 10 H -0.26 -11.45 6.85 99.48 0.68 -10.77 16 11 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.24 -9.93 6.53 99.48 0.65 -9.28 16 13 N -1.09 -40.17 4.74 -172.52 -0.82 -40.99 16 14 S 2.71 93.80 5.64 -56.49 -0.32 93.48 16 15 O -0.98 -37.27 16.69 -128.00 -2.14 -39.41 16 16 O -0.99 -35.98 17.27 -128.00 -2.21 -38.19 16 17 C -0.69 -22.30 5.85 22.30 0.13 -22.17 16 18 C -0.01 -0.25 9.51 22.25 0.21 -0.04 16 19 C -0.13 -3.45 9.79 22.41 0.22 -3.23 16 20 C -0.04 -1.11 6.11 22.62 0.14 -0.97 16 21 S -0.11 -2.21 22.56 -56.49 -1.27 -3.49 16 22 C -0.15 -1.86 9.15 113.37 1.04 -0.83 16 23 C -0.16 -4.23 9.36 22.41 0.21 -4.02 16 24 C -0.01 -0.42 8.89 22.25 0.20 -0.22 16 25 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.06 1.99 7.59 -2.39 -0.02 1.97 16 27 H 0.05 2.09 7.13 -2.39 -0.02 2.08 16 28 H 0.05 1.92 3.24 -2.39 -0.01 1.91 16 29 H 0.07 2.52 7.80 -2.39 -0.02 2.50 16 30 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.42 14.39 8.68 -96.74 -0.84 13.55 16 32 H 0.16 4.01 7.61 -2.91 -0.02 3.99 16 33 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.10 1.06 7.75 -2.39 -0.02 1.05 16 35 H 0.09 1.19 7.75 -2.39 -0.02 1.18 16 36 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.16 3.09 5.88 -2.91 -0.02 3.08 16 38 H 0.15 4.20 7.62 -2.91 -0.02 4.18 16 Total: -1.00 -66.43 332.97 -0.87 -67.29 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.17 Total: 27.40 kcal Atomic # 6 Polarization: -58.43 SS G_CDS: 3.75 Total: -54.67 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -0.52 Total: -95.41 kcal Atomic # 8 Polarization: -73.25 SS G_CDS: -4.35 Total: -77.60 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.67 Total: 43.00 kcal Atomic # 16 Polarization: 91.59 SS G_CDS: -1.59 Total: 89.99 kcal Total: -66.43 -0.87 -67.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186436219.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.866 kcal (2) G-P(sol) polarization free energy of solvation -66.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds