Wall clock time and date at job start Tue Mar 31 2020 10:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47102 * 2 1 4 4 H 1.09007 * 109.46890 * 304.74841 * 3 2 1 5 5 C 1.50701 * 109.46899 * 184.74791 * 3 2 1 6 6 H 1.08001 * 119.99661 * 239.72001 * 5 3 2 7 7 C 1.37873 * 119.99988 * 60.00357 * 5 3 2 8 8 N 1.31506 * 120.00322 * 359.71907 * 7 5 3 9 9 Si 1.86806 * 119.99889 * 179.72578 * 7 5 3 10 10 H 1.48493 * 109.47516 * 89.99477 * 9 7 5 11 11 H 1.48497 * 109.46967 * 209.99718 * 9 7 5 12 12 H 1.48506 * 109.46732 * 329.99300 * 9 7 5 13 13 N 1.46494 * 109.47413 * 64.74578 * 3 2 1 14 14 S 1.65601 * 120.00247 * 215.53049 * 13 3 2 15 15 O 1.42107 * 106.40077 * 178.74140 * 14 13 3 16 16 O 1.42095 * 106.40379 * 311.66146 * 14 13 3 17 17 C 1.76199 * 107.21668 * 65.20476 * 14 13 3 18 18 C 1.38302 * 119.91471 * 273.90653 * 17 14 13 19 19 C 1.38089 * 120.07685 * 179.76604 * 18 17 14 20 20 C 1.38971 * 119.92174 * 0.51264 * 19 18 17 21 21 S 1.76196 * 120.08450 * 179.72225 * 20 19 18 22 22 C 1.81406 * 102.99579 * 0.02562 * 21 20 19 23 23 C 1.38980 * 119.83746 * 359.74604 * 20 19 18 24 24 C 1.38082 * 119.91972 * 359.97438 * 23 20 19 25 25 H 1.09003 * 109.47231 * 64.75053 * 1 2 3 26 26 H 1.08992 * 109.47271 * 184.75830 * 1 2 3 27 27 H 1.09003 * 109.47308 * 304.75521 * 1 2 3 28 28 H 1.09000 * 109.47388 * 240.00102 * 2 1 3 29 29 H 1.08995 * 109.47087 * 119.99711 * 2 1 3 30 30 H 0.97005 * 120.00746 * 180.02562 * 8 7 5 31 31 H 0.97004 * 120.00213 * 35.52989 * 13 3 2 32 32 H 1.07993 * 119.96245 * 0.02562 * 18 17 14 33 33 H 1.08005 * 120.04076 * 180.25729 * 19 18 17 34 34 H 1.09005 * 109.46663 * 180.02562 * 22 21 20 35 35 H 1.08995 * 109.46996 * 299.99512 * 22 21 20 36 36 H 1.08993 * 109.46916 * 60.00497 * 22 21 20 37 37 H 1.07996 * 120.04145 * 179.97438 * 23 20 19 38 38 H 1.08000 * 119.96328 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 1.9803 -0.8445 5 6 3.5424 1.4441 -0.1176 6 1 4.1442 1.8938 0.6582 7 6 4.1483 0.8766 -1.2184 8 7 3.4154 0.3291 -2.1631 9 14 6.0103 0.8854 -1.3678 10 1 6.5631 -0.3419 -0.7408 11 1 6.3916 0.9230 -2.8025 12 1 6.5565 2.0823 -0.6790 13 7 1.6472 2.0994 1.2491 14 16 1.2378 3.7040 1.2477 15 8 0.8827 4.0286 2.5849 16 8 2.2618 4.3788 0.5299 17 6 -0.2317 3.8665 0.2892 18 6 -0.1470 4.0171 -1.0830 19 6 -1.2967 4.1399 -1.8379 20 6 -2.5394 4.1227 -1.2162 21 16 -4.0089 4.2863 -2.1746 22 6 -3.3763 4.4439 -3.8675 23 6 -2.6204 3.9765 0.1636 24 6 -1.4667 3.8485 0.9114 25 1 -0.3634 0.4384 -0.9295 26 1 -0.3633 -1.0240 0.0852 27 1 -0.3634 0.5859 0.8443 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8417 -0.0705 -2.9375 31 1 1.6269 1.5944 2.0771 32 1 0.8192 4.0345 -1.5650 33 1 -1.2300 4.2533 -2.9099 34 1 -4.2120 4.5532 -4.5588 35 1 -2.7326 5.3208 -3.9346 36 1 -2.8047 3.5526 -4.1261 37 1 -3.5844 3.9632 0.6502 38 1 -1.5288 3.7353 1.9837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186436232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:51 Heat of formation + Delta-G solvation = -56.786877 kcal Electronic energy + Delta-G solvation = -22540.319073 eV Core-core repulsion = 19214.779001 eV Total energy + Delta-G solvation = -3325.540072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.98315 -36.65297 -35.93779 -35.18957 -32.19226 -31.55321 -31.13677 -30.62815 -29.07230 -26.63890 -23.39960 -23.07658 -22.73033 -20.20318 -19.02937 -18.06124 -17.26659 -16.89600 -16.22983 -15.71796 -15.08611 -14.96365 -14.70378 -14.41881 -14.09175 -13.70840 -13.67105 -13.21087 -13.07859 -12.97169 -12.90271 -12.32511 -11.90930 -11.65507 -11.48273 -11.44050 -11.29016 -11.21656 -10.94838 -10.78013 -10.71425 -10.38502 -10.20555 -10.11530 -9.85103 -9.82503 -9.67335 -9.04118 -8.44715 -8.25345 -7.71263 -6.08801 -4.15079 0.69632 1.10486 1.27923 1.33635 2.12045 3.29626 3.36057 3.36678 3.43605 3.86986 4.33780 4.42925 4.63781 4.78864 4.81449 4.83840 5.04880 5.21079 5.29917 5.38985 5.55476 5.59332 5.95056 5.99945 6.07587 6.10762 6.15067 6.22315 6.29459 6.48486 6.76656 6.79279 6.91489 7.08479 7.55422 7.62841 7.87193 8.07915 8.22784 8.88472 9.51229 10.95488 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.004739 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.175525 B = 5907.460531 C = 6660.851116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.280 3.720 4 H 0.041 0.959 5 C -0.519 4.519 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.271 1.271 13 N -1.100 6.100 14 S 2.690 3.310 15 O -0.985 6.985 16 O -0.947 6.947 17 C -0.674 4.674 18 C 0.011 3.989 19 C -0.156 4.156 20 C -0.038 4.038 21 S -0.115 6.115 22 C -0.147 4.147 23 C -0.128 4.128 24 C -0.003 4.003 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.106 0.894 29 H 0.041 0.959 30 H 0.263 0.737 31 H 0.406 0.594 32 H 0.148 0.852 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.133 0.867 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.531 4.806 -0.721 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.176 3.824 4 H 0.059 0.941 5 C -0.559 4.559 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.861 5.861 14 S 2.777 3.223 15 O -0.975 6.975 16 O -0.937 6.937 17 C -0.761 4.761 18 C -0.010 4.010 19 C -0.181 4.181 20 C -0.152 4.152 21 S 0.129 5.871 22 C -0.316 4.316 23 C -0.152 4.152 24 C -0.024 4.024 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.124 0.876 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.240 0.760 32 H 0.166 0.834 33 H 0.149 0.851 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.151 0.849 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.325 5.537 -0.484 15.366 hybrid contribution 1.628 -0.595 -0.779 1.900 sum -12.697 4.942 -1.263 13.684 Atomic orbital electron populations 1.21833 0.99006 0.99451 1.00248 1.21885 0.91909 0.99434 1.03413 1.18564 0.94732 0.90160 0.78900 0.94102 1.21541 0.91246 1.37052 1.06021 0.91710 1.24884 0.98526 0.94975 0.95425 1.69830 1.35093 1.38594 1.09802 0.86517 0.85319 0.78543 0.77248 1.20682 1.21201 1.19615 1.55524 1.82708 1.29567 1.18265 1.01956 0.73721 0.73667 0.72962 1.93511 1.84949 1.83647 1.35428 1.93606 1.53299 1.72680 1.74083 1.31330 1.19582 1.16971 1.08200 1.20967 0.99387 0.88875 0.91778 1.21259 0.91510 1.05178 1.00137 1.21987 0.96333 0.99676 0.97179 1.85427 1.09217 1.90455 1.02040 1.23732 1.06085 1.06207 0.95531 1.20787 0.99030 1.03834 0.91575 1.20835 0.90449 0.91092 1.00057 0.93883 0.94536 0.94246 0.87566 0.93979 0.92740 0.76027 0.83450 0.85125 0.87278 0.89419 0.89197 0.84929 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.85 37.16 0.37 -2.30 16 2 C -0.13 -2.70 5.37 -26.73 -0.14 -2.84 16 3 C 0.28 6.37 2.16 -69.08 -0.15 6.22 16 4 H 0.04 0.98 6.86 -51.93 -0.36 0.62 16 5 C -0.52 -13.59 8.84 -34.44 -0.30 -13.89 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 8 N -0.89 -23.80 11.28 55.43 0.63 -23.18 16 9 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 N -1.10 -21.36 4.81 -5.88 -0.03 -21.39 16 14 S 2.69 51.39 5.64 -107.50 -0.61 50.79 16 15 O -0.99 -19.33 17.18 -57.17 -0.98 -20.31 16 16 O -0.95 -21.45 17.13 -57.17 -0.98 -22.43 16 17 C -0.67 -11.30 5.86 -39.53 -0.23 -11.53 16 18 C 0.01 0.18 8.70 -39.61 -0.34 -0.16 16 19 C -0.16 -2.21 9.36 -39.36 -0.37 -2.58 16 20 C -0.04 -0.51 6.11 -39.03 -0.24 -0.75 16 21 S -0.11 -1.24 22.56 -107.50 -2.43 -3.67 16 22 C -0.15 -1.17 9.15 101.05 0.92 -0.24 16 23 C -0.13 -1.70 9.79 -39.36 -0.39 -2.09 16 24 C 0.00 -0.05 9.52 -39.61 -0.38 -0.42 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.65 7.62 -51.93 -0.40 0.25 16 28 H 0.11 2.56 5.95 -51.93 -0.31 2.25 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.41 6.94 8.84 -34.47 -0.30 6.63 16 32 H 0.15 2.52 7.51 -52.49 -0.39 2.12 16 33 H 0.13 1.53 5.88 -52.48 -0.31 1.22 16 34 H 0.11 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.09 0.65 7.75 -51.93 -0.40 0.25 16 36 H 0.09 0.72 7.75 -51.93 -0.40 0.32 16 37 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.14 1.85 7.52 -52.49 -0.39 1.45 16 LS Contribution 341.92 15.07 5.15 5.15 Total: -1.00 -30.87 341.92 -10.54 -41.40 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.93 Total: 6.75 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: -1.35 Total: -29.00 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.60 Total: -44.56 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.96 Total: -42.74 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 50.15 SS G_CDS: -3.03 Total: 47.12 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.87 -10.54 -41.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186436232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.383 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds