Wall clock time and date at job start Tue Mar 31 2020 10:38:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53002 * 109.47102 * 2 1
4 4 H 1.09007 * 109.46890 * 304.74841 * 3 2 1
5 5 C 1.50701 * 109.46899 * 184.74791 * 3 2 1
6 6 H 1.08001 * 119.99661 * 239.72001 * 5 3 2
7 7 C 1.37873 * 119.99988 * 60.00357 * 5 3 2
8 8 N 1.31506 * 120.00322 * 359.71907 * 7 5 3
9 9 Si 1.86806 * 119.99889 * 179.72578 * 7 5 3
10 10 H 1.48493 * 109.47516 * 89.99477 * 9 7 5
11 11 H 1.48497 * 109.46967 * 209.99718 * 9 7 5
12 12 H 1.48506 * 109.46732 * 329.99300 * 9 7 5
13 13 N 1.46494 * 109.47413 * 64.74578 * 3 2 1
14 14 S 1.65601 * 120.00247 * 215.53049 * 13 3 2
15 15 O 1.42107 * 106.40077 * 178.74140 * 14 13 3
16 16 O 1.42095 * 106.40379 * 311.66146 * 14 13 3
17 17 C 1.76199 * 107.21668 * 65.20476 * 14 13 3
18 18 C 1.38302 * 119.91471 * 273.90653 * 17 14 13
19 19 C 1.38089 * 120.07685 * 179.76604 * 18 17 14
20 20 C 1.38971 * 119.92174 * 0.51264 * 19 18 17
21 21 S 1.76196 * 120.08450 * 179.72225 * 20 19 18
22 22 C 1.81406 * 102.99579 * 0.02562 * 21 20 19
23 23 C 1.38980 * 119.83746 * 359.74604 * 20 19 18
24 24 C 1.38082 * 119.91972 * 359.97438 * 23 20 19
25 25 H 1.09003 * 109.47231 * 64.75053 * 1 2 3
26 26 H 1.08992 * 109.47271 * 184.75830 * 1 2 3
27 27 H 1.09003 * 109.47308 * 304.75521 * 1 2 3
28 28 H 1.09000 * 109.47388 * 240.00102 * 2 1 3
29 29 H 1.08995 * 109.47087 * 119.99711 * 2 1 3
30 30 H 0.97005 * 120.00746 * 180.02562 * 8 7 5
31 31 H 0.97004 * 120.00213 * 35.52989 * 13 3 2
32 32 H 1.07993 * 119.96245 * 0.02562 * 18 17 14
33 33 H 1.08005 * 120.04076 * 180.25729 * 19 18 17
34 34 H 1.09005 * 109.46663 * 180.02562 * 22 21 20
35 35 H 1.08995 * 109.46996 * 299.99512 * 22 21 20
36 36 H 1.08993 * 109.46916 * 60.00497 * 22 21 20
37 37 H 1.07996 * 120.04145 * 179.97438 * 23 20 19
38 38 H 1.08000 * 119.96328 * 179.97438 * 24 23 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6088 1.9803 -0.8445
5 6 3.5424 1.4441 -0.1176
6 1 4.1442 1.8938 0.6582
7 6 4.1483 0.8766 -1.2184
8 7 3.4154 0.3291 -2.1631
9 14 6.0103 0.8854 -1.3678
10 1 6.5631 -0.3419 -0.7408
11 1 6.3916 0.9230 -2.8025
12 1 6.5565 2.0823 -0.6790
13 7 1.6472 2.0994 1.2491
14 16 1.2378 3.7040 1.2477
15 8 0.8827 4.0286 2.5849
16 8 2.2618 4.3788 0.5299
17 6 -0.2317 3.8665 0.2892
18 6 -0.1470 4.0171 -1.0830
19 6 -1.2967 4.1399 -1.8379
20 6 -2.5394 4.1227 -1.2162
21 16 -4.0089 4.2863 -2.1746
22 6 -3.3763 4.4439 -3.8675
23 6 -2.6204 3.9765 0.1636
24 6 -1.4667 3.8485 0.9114
25 1 -0.3634 0.4384 -0.9295
26 1 -0.3633 -1.0240 0.0852
27 1 -0.3634 0.5859 0.8443
28 1 1.8934 -0.5138 -0.8900
29 1 1.8933 -0.5138 0.8900
30 1 3.8417 -0.0705 -2.9375
31 1 1.6269 1.5944 2.0771
32 1 0.8192 4.0345 -1.5650
33 1 -1.2300 4.2533 -2.9099
34 1 -4.2120 4.5532 -4.5588
35 1 -2.7326 5.3208 -3.9346
36 1 -2.8047 3.5526 -4.1261
37 1 -3.5844 3.9632 0.6502
38 1 -1.5288 3.7353 1.9837
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000186436232.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:38:50
Heat of formation + Delta-G solvation = -76.725888 kcal
Electronic energy + Delta-G solvation = -22541.183693 eV
Core-core repulsion = 19214.779001 eV
Total energy + Delta-G solvation = -3326.404692 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 315.075 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.10598 -38.27319 -37.65713 -36.82262 -34.13267 -32.64480 -32.25835 -32.21904
-29.75969 -28.51098 -24.86035 -24.57868 -23.85273 -21.90716 -20.49747 -19.26816
-18.70609 -18.53429 -17.85886 -17.21953 -16.66216 -16.08754 -15.89355 -15.77219
-15.32355 -14.90446 -14.84000 -14.69795 -14.63633 -14.00405 -13.98430 -13.57364
-13.35432 -13.23681 -13.11544 -13.02183 -13.00847 -12.70811 -12.58022 -12.47185
-12.09015 -11.99076 -11.62400 -11.55831 -11.44204 -11.28466 -11.19485 -10.43508
-10.16417 -9.99320 -8.59992 -8.08703 -6.20772 -0.55726 -0.30448 0.21589
0.40554 1.31070 1.42329 1.44942 1.54979 2.10826 2.43013 2.48771
2.87405 3.17847 3.41254 3.75587 3.79303 4.18122 4.22004 4.24008
4.35828 4.48212 4.49292 4.61739 4.70782 4.82003 4.84817 4.87742
4.90533 5.00753 5.05079 5.14931 5.36313 5.41645 5.66816 5.70060
5.82229 6.03814 6.30136 6.47732 6.85543 7.47427 8.93346
Molecular weight = 315.07amu
Principal moments of inertia in cm(-1)
A = 0.015073 B = 0.004739 C = 0.004203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1857.175525 B = 5907.460531 C = 6660.851116
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.121 4.121
3 C 0.286 3.714
4 H 0.027 0.973
5 C -0.541 4.541
6 H 0.049 0.951
7 C 0.024 3.976
8 N -0.909 5.909
9 Si 0.944 3.056
10 H -0.271 1.271
11 H -0.281 1.281
12 H -0.280 1.280
13 N -1.098 6.098
14 S 2.701 3.299
15 O -0.992 6.992
16 O -0.992 6.992
17 C -0.683 4.683
18 C -0.009 4.009
19 C -0.159 4.159
20 C -0.041 4.041
21 S -0.104 6.104
22 C -0.149 4.149
23 C -0.126 4.126
24 C -0.006 4.006
25 H 0.036 0.964
26 H 0.055 0.945
27 H 0.055 0.945
28 H 0.078 0.922
29 H 0.045 0.955
30 H 0.264 0.736
31 H 0.416 0.584
32 H 0.129 0.871
33 H 0.151 0.849
34 H 0.134 0.866
35 H 0.094 0.906
36 H 0.091 0.909
37 H 0.162 0.838
38 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.828 4.708 -1.101 16.550
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.161 4.161
3 C 0.181 3.819
4 H 0.045 0.955
5 C -0.580 4.580
6 H 0.067 0.933
7 C -0.176 4.176
8 N -0.549 5.549
9 Si 0.770 3.230
10 H -0.197 1.197
11 H -0.206 1.206
12 H -0.205 1.205
13 N -0.859 5.859
14 S 2.793 3.207
15 O -0.983 6.983
16 O -0.982 6.982
17 C -0.775 4.775
18 C -0.031 4.031
19 C -0.184 4.184
20 C -0.155 4.155
21 S 0.141 5.859
22 C -0.317 4.317
23 C -0.151 4.151
24 C -0.027 4.027
25 H 0.055 0.945
26 H 0.074 0.926
27 H 0.074 0.926
28 H 0.097 0.903
29 H 0.064 0.936
30 H 0.074 0.926
31 H 0.251 0.749
32 H 0.146 0.854
33 H 0.169 0.831
34 H 0.152 0.848
35 H 0.113 0.887
36 H 0.110 0.890
37 H 0.179 0.821
38 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -16.598 5.424 -0.832 17.482
hybrid contribution 2.189 -0.501 -0.741 2.365
sum -14.410 4.924 -1.573 15.309
Atomic orbital electron populations
1.21724 0.96225 1.01008 1.00652 1.21715 0.94381 0.97862 1.02162
1.18304 0.92843 0.91114 0.79642 0.95505 1.21848 0.93304 1.37026
1.05860 0.93262 1.25475 1.01791 0.94942 0.95371 1.69921 1.36117
1.38858 1.09969 0.85774 0.81558 0.78340 0.77305 1.19687 1.20592
1.20496 1.55291 1.83262 1.29539 1.17821 1.01213 0.73884 0.72953
0.72625 1.93488 1.85167 1.83600 1.36005 1.93545 1.56126 1.73632
1.74892 1.30751 1.18797 1.19957 1.07991 1.20923 0.99655 0.90471
0.92026 1.21457 0.91091 1.04764 1.01096 1.22339 0.97300 0.97893
0.97918 1.85444 1.07406 1.89549 1.03508 1.23908 1.07236 1.06655
0.93875 1.21145 0.99683 1.02579 0.91672 1.21080 0.89983 0.90641
1.01035 0.94493 0.92551 0.92605 0.90332 0.93647 0.92639 0.74863
0.85362 0.83096 0.84819 0.88678 0.89049 0.82058 0.82306
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.80 9.85 71.98 0.71 -4.09 16
2 C -0.12 -5.18 5.37 30.59 0.16 -5.02 16
3 C 0.29 13.29 2.16 44.25 0.10 13.38 16
4 H 0.03 1.34 6.86 -2.38 -0.02 1.32 16
5 C -0.54 -29.09 8.84 25.60 0.23 -28.86 16
6 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16
7 C 0.02 1.29 5.30 84.65 0.45 1.74 16
8 N -0.91 -49.14 11.28 21.44 0.24 -48.90 16
9 Si 0.94 43.38 29.54 68.60 2.03 45.41 16
10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16
11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16
12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16
13 N -1.10 -43.30 4.81 -172.52 -0.83 -44.13 16
14 S 2.70 105.45 5.64 -56.49 -0.32 105.13 16
15 O -0.99 -38.93 17.18 -128.00 -2.20 -41.13 16
16 O -0.99 -47.01 17.13 -128.00 -2.19 -49.20 16
17 C -0.68 -22.85 5.86 22.30 0.13 -22.72 16
18 C -0.01 -0.31 8.70 22.25 0.19 -0.12 16
19 C -0.16 -4.31 9.36 22.41 0.21 -4.10 16
20 C -0.04 -1.00 6.11 22.62 0.14 -0.86 16
21 S -0.10 -1.91 22.56 -56.49 -1.27 -3.18 16
22 C -0.15 -1.88 9.15 113.37 1.04 -0.84 16
23 C -0.13 -3.02 9.79 22.41 0.22 -2.80 16
24 C -0.01 -0.17 9.52 22.25 0.21 0.05 16
25 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16
26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16
27 H 0.05 1.73 7.62 -2.39 -0.02 1.71 16
28 H 0.08 3.83 5.95 -2.39 -0.01 3.82 16
29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16
30 H 0.26 13.63 8.31 -92.70 -0.77 12.86 16
31 H 0.42 14.26 8.84 -96.74 -0.86 13.40 16
32 H 0.13 4.67 7.51 -2.91 -0.02 4.64 16
33 H 0.15 3.30 5.88 -2.91 -0.02 3.28 16
34 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16
35 H 0.09 1.11 7.75 -2.39 -0.02 1.10 16
36 H 0.09 1.19 7.75 -2.39 -0.02 1.17 16
37 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16
38 H 0.16 3.78 7.52 -2.91 -0.02 3.76 16
Total: -1.00 -66.74 341.92 -0.54 -67.28
By element:
Atomic # 1 Polarization: 22.73 SS G_CDS: 0.22 Total: 22.95 kcal
Atomic # 6 Polarization: -58.02 SS G_CDS: 3.78 Total: -54.23 kcal
Atomic # 7 Polarization: -92.44 SS G_CDS: -0.59 Total: -93.03 kcal
Atomic # 8 Polarization: -85.94 SS G_CDS: -4.39 Total: -90.33 kcal
Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal
Atomic # 16 Polarization: 103.54 SS G_CDS: -1.59 Total: 101.95 kcal
Total: -66.74 -0.54 -67.28 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186436232.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.445 kcal
(2) G-P(sol) polarization free energy of solvation -66.742 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.187 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.280 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.726 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds