Wall clock time and date at job start Tue Mar 31 2020 10:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47102 * 2 1 4 4 H 1.09007 * 109.46890 * 304.74841 * 3 2 1 5 5 C 1.50701 * 109.46899 * 184.74791 * 3 2 1 6 6 H 1.08001 * 119.99661 * 239.72001 * 5 3 2 7 7 C 1.37873 * 119.99988 * 60.00357 * 5 3 2 8 8 N 1.31506 * 120.00322 * 359.71907 * 7 5 3 9 9 Si 1.86806 * 119.99889 * 179.72578 * 7 5 3 10 10 H 1.48493 * 109.47516 * 89.99477 * 9 7 5 11 11 H 1.48497 * 109.46967 * 209.99718 * 9 7 5 12 12 H 1.48506 * 109.46732 * 329.99300 * 9 7 5 13 13 N 1.46494 * 109.47413 * 64.74578 * 3 2 1 14 14 S 1.65601 * 120.00247 * 215.53049 * 13 3 2 15 15 O 1.42107 * 106.40077 * 178.74140 * 14 13 3 16 16 O 1.42095 * 106.40379 * 311.66146 * 14 13 3 17 17 C 1.76199 * 107.21668 * 65.20476 * 14 13 3 18 18 C 1.38302 * 119.91471 * 273.90653 * 17 14 13 19 19 C 1.38089 * 120.07685 * 179.76604 * 18 17 14 20 20 C 1.38971 * 119.92174 * 0.51264 * 19 18 17 21 21 S 1.76196 * 120.08450 * 179.72225 * 20 19 18 22 22 C 1.81406 * 102.99579 * 0.02562 * 21 20 19 23 23 C 1.38980 * 119.83746 * 359.74604 * 20 19 18 24 24 C 1.38082 * 119.91972 * 359.97438 * 23 20 19 25 25 H 1.09003 * 109.47231 * 64.75053 * 1 2 3 26 26 H 1.08992 * 109.47271 * 184.75830 * 1 2 3 27 27 H 1.09003 * 109.47308 * 304.75521 * 1 2 3 28 28 H 1.09000 * 109.47388 * 240.00102 * 2 1 3 29 29 H 1.08995 * 109.47087 * 119.99711 * 2 1 3 30 30 H 0.97005 * 120.00746 * 180.02562 * 8 7 5 31 31 H 0.97004 * 120.00213 * 35.52989 * 13 3 2 32 32 H 1.07993 * 119.96245 * 0.02562 * 18 17 14 33 33 H 1.08005 * 120.04076 * 180.25729 * 19 18 17 34 34 H 1.09005 * 109.46663 * 180.02562 * 22 21 20 35 35 H 1.08995 * 109.46996 * 299.99512 * 22 21 20 36 36 H 1.08993 * 109.46916 * 60.00497 * 22 21 20 37 37 H 1.07996 * 120.04145 * 179.97438 * 23 20 19 38 38 H 1.08000 * 119.96328 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 1.9803 -0.8445 5 6 3.5424 1.4441 -0.1176 6 1 4.1442 1.8938 0.6582 7 6 4.1483 0.8766 -1.2184 8 7 3.4154 0.3291 -2.1631 9 14 6.0103 0.8854 -1.3678 10 1 6.5631 -0.3419 -0.7408 11 1 6.3916 0.9230 -2.8025 12 1 6.5565 2.0823 -0.6790 13 7 1.6472 2.0994 1.2491 14 16 1.2378 3.7040 1.2477 15 8 0.8827 4.0286 2.5849 16 8 2.2618 4.3788 0.5299 17 6 -0.2317 3.8665 0.2892 18 6 -0.1470 4.0171 -1.0830 19 6 -1.2967 4.1399 -1.8379 20 6 -2.5394 4.1227 -1.2162 21 16 -4.0089 4.2863 -2.1746 22 6 -3.3763 4.4439 -3.8675 23 6 -2.6204 3.9765 0.1636 24 6 -1.4667 3.8485 0.9114 25 1 -0.3634 0.4384 -0.9295 26 1 -0.3633 -1.0240 0.0852 27 1 -0.3634 0.5859 0.8443 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8417 -0.0705 -2.9375 31 1 1.6269 1.5944 2.0771 32 1 0.8192 4.0345 -1.5650 33 1 -1.2300 4.2533 -2.9099 34 1 -4.2120 4.5532 -4.5588 35 1 -2.7326 5.3208 -3.9346 36 1 -2.8047 3.5526 -4.1261 37 1 -3.5844 3.9632 0.6502 38 1 -1.5288 3.7353 1.9837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186436232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:50 Heat of formation + Delta-G solvation = -76.725888 kcal Electronic energy + Delta-G solvation = -22541.183693 eV Core-core repulsion = 19214.779001 eV Total energy + Delta-G solvation = -3326.404692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10598 -38.27319 -37.65713 -36.82262 -34.13267 -32.64480 -32.25835 -32.21904 -29.75969 -28.51098 -24.86035 -24.57868 -23.85273 -21.90716 -20.49747 -19.26816 -18.70609 -18.53429 -17.85886 -17.21953 -16.66216 -16.08754 -15.89355 -15.77219 -15.32355 -14.90446 -14.84000 -14.69795 -14.63633 -14.00405 -13.98430 -13.57364 -13.35432 -13.23681 -13.11544 -13.02183 -13.00847 -12.70811 -12.58022 -12.47185 -12.09015 -11.99076 -11.62400 -11.55831 -11.44204 -11.28466 -11.19485 -10.43508 -10.16417 -9.99320 -8.59992 -8.08703 -6.20772 -0.55726 -0.30448 0.21589 0.40554 1.31070 1.42329 1.44942 1.54979 2.10826 2.43013 2.48771 2.87405 3.17847 3.41254 3.75587 3.79303 4.18122 4.22004 4.24008 4.35828 4.48212 4.49292 4.61739 4.70782 4.82003 4.84817 4.87742 4.90533 5.00753 5.05079 5.14931 5.36313 5.41645 5.66816 5.70060 5.82229 6.03814 6.30136 6.47732 6.85543 7.47427 8.93346 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.004739 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.175525 B = 5907.460531 C = 6660.851116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.286 3.714 4 H 0.027 0.973 5 C -0.541 4.541 6 H 0.049 0.951 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.280 1.280 13 N -1.098 6.098 14 S 2.701 3.299 15 O -0.992 6.992 16 O -0.992 6.992 17 C -0.683 4.683 18 C -0.009 4.009 19 C -0.159 4.159 20 C -0.041 4.041 21 S -0.104 6.104 22 C -0.149 4.149 23 C -0.126 4.126 24 C -0.006 4.006 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.416 0.584 32 H 0.129 0.871 33 H 0.151 0.849 34 H 0.134 0.866 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.162 0.838 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.828 4.708 -1.101 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.181 3.819 4 H 0.045 0.955 5 C -0.580 4.580 6 H 0.067 0.933 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.205 1.205 13 N -0.859 5.859 14 S 2.793 3.207 15 O -0.983 6.983 16 O -0.982 6.982 17 C -0.775 4.775 18 C -0.031 4.031 19 C -0.184 4.184 20 C -0.155 4.155 21 S 0.141 5.859 22 C -0.317 4.317 23 C -0.151 4.151 24 C -0.027 4.027 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.251 0.749 32 H 0.146 0.854 33 H 0.169 0.831 34 H 0.152 0.848 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.179 0.821 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.598 5.424 -0.832 17.482 hybrid contribution 2.189 -0.501 -0.741 2.365 sum -14.410 4.924 -1.573 15.309 Atomic orbital electron populations 1.21724 0.96225 1.01008 1.00652 1.21715 0.94381 0.97862 1.02162 1.18304 0.92843 0.91114 0.79642 0.95505 1.21848 0.93304 1.37026 1.05860 0.93262 1.25475 1.01791 0.94942 0.95371 1.69921 1.36117 1.38858 1.09969 0.85774 0.81558 0.78340 0.77305 1.19687 1.20592 1.20496 1.55291 1.83262 1.29539 1.17821 1.01213 0.73884 0.72953 0.72625 1.93488 1.85167 1.83600 1.36005 1.93545 1.56126 1.73632 1.74892 1.30751 1.18797 1.19957 1.07991 1.20923 0.99655 0.90471 0.92026 1.21457 0.91091 1.04764 1.01096 1.22339 0.97300 0.97893 0.97918 1.85444 1.07406 1.89549 1.03508 1.23908 1.07236 1.06655 0.93875 1.21145 0.99683 1.02579 0.91672 1.21080 0.89983 0.90641 1.01035 0.94493 0.92551 0.92605 0.90332 0.93647 0.92639 0.74863 0.85362 0.83096 0.84819 0.88678 0.89049 0.82058 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.85 71.98 0.71 -4.09 16 2 C -0.12 -5.18 5.37 30.59 0.16 -5.02 16 3 C 0.29 13.29 2.16 44.25 0.10 13.38 16 4 H 0.03 1.34 6.86 -2.38 -0.02 1.32 16 5 C -0.54 -29.09 8.84 25.60 0.23 -28.86 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 7 C 0.02 1.29 5.30 84.65 0.45 1.74 16 8 N -0.91 -49.14 11.28 21.44 0.24 -48.90 16 9 Si 0.94 43.38 29.54 68.60 2.03 45.41 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 N -1.10 -43.30 4.81 -172.52 -0.83 -44.13 16 14 S 2.70 105.45 5.64 -56.49 -0.32 105.13 16 15 O -0.99 -38.93 17.18 -128.00 -2.20 -41.13 16 16 O -0.99 -47.01 17.13 -128.00 -2.19 -49.20 16 17 C -0.68 -22.85 5.86 22.30 0.13 -22.72 16 18 C -0.01 -0.31 8.70 22.25 0.19 -0.12 16 19 C -0.16 -4.31 9.36 22.41 0.21 -4.10 16 20 C -0.04 -1.00 6.11 22.62 0.14 -0.86 16 21 S -0.10 -1.91 22.56 -56.49 -1.27 -3.18 16 22 C -0.15 -1.88 9.15 113.37 1.04 -0.84 16 23 C -0.13 -3.02 9.79 22.41 0.22 -2.80 16 24 C -0.01 -0.17 9.52 22.25 0.21 0.05 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.73 7.62 -2.39 -0.02 1.71 16 28 H 0.08 3.83 5.95 -2.39 -0.01 3.82 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.26 13.63 8.31 -92.70 -0.77 12.86 16 31 H 0.42 14.26 8.84 -96.74 -0.86 13.40 16 32 H 0.13 4.67 7.51 -2.91 -0.02 4.64 16 33 H 0.15 3.30 5.88 -2.91 -0.02 3.28 16 34 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.11 7.75 -2.39 -0.02 1.10 16 36 H 0.09 1.19 7.75 -2.39 -0.02 1.17 16 37 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 38 H 0.16 3.78 7.52 -2.91 -0.02 3.76 16 Total: -1.00 -66.74 341.92 -0.54 -67.28 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.22 Total: 22.95 kcal Atomic # 6 Polarization: -58.02 SS G_CDS: 3.78 Total: -54.23 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -0.59 Total: -93.03 kcal Atomic # 8 Polarization: -85.94 SS G_CDS: -4.39 Total: -90.33 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 103.54 SS G_CDS: -1.59 Total: 101.95 kcal Total: -66.74 -0.54 -67.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186436232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.445 kcal (2) G-P(sol) polarization free energy of solvation -66.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds