Wall clock time and date at job start Tue Mar 31 2020 10:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46986 * 2 1 4 4 C 1.46496 * 120.00628 * 270.00225 * 3 2 1 5 5 C 1.50699 * 109.47598 * 270.00465 * 4 3 2 6 6 H 1.08005 * 119.99628 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00538 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00182 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99668 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47170 * 89.99666 * 9 7 5 11 11 H 1.48495 * 109.46883 * 209.99839 * 9 7 5 12 12 H 1.48496 * 109.47123 * 329.99923 * 9 7 5 13 13 C 1.34774 * 119.99828 * 90.00387 * 3 2 1 14 14 O 1.21279 * 120.00472 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00020 * 0.02562 * 13 3 2 16 16 O 1.42895 * 109.47147 * 180.02562 * 15 13 3 17 17 C 1.35961 * 116.99861 * 180.02562 * 16 15 13 18 18 C 1.38676 * 120.05435 * 359.97438 * 17 16 15 19 19 C 1.38185 * 119.99232 * 179.97438 * 18 17 16 20 20 C 1.38255 * 120.10033 * 0.02562 * 19 18 17 21 21 C 1.38356 * 120.11348 * 0.02562 * 20 19 18 22 22 Cl 1.73607 * 119.99212 * 179.97438 * 21 20 19 23 23 C 1.38437 * 120.00972 * 359.70771 * 21 20 19 24 24 F 1.35104 * 120.05298 * 180.29481 * 23 21 20 25 25 H 1.08997 * 109.47532 * 59.99922 * 1 2 3 26 26 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46936 * 299.99297 * 1 2 3 28 28 H 1.09004 * 109.46898 * 240.00405 * 2 1 3 29 29 H 1.08993 * 109.47182 * 120.00744 * 2 1 3 30 30 H 1.09008 * 109.47096 * 29.99824 * 4 3 2 31 31 H 1.09003 * 109.47776 * 149.99700 * 4 3 2 32 32 H 0.97002 * 119.99991 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46953 * 299.99667 * 15 13 3 34 34 H 1.09000 * 109.47318 * 59.99264 * 15 13 3 35 35 H 1.07998 * 120.00920 * 0.02562 * 18 17 16 36 36 H 1.07994 * 119.94529 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.93891 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3899 -2.8780 8 7 5.3911 2.1837 -3.2575 9 14 3.0126 3.4356 -3.9290 10 1 3.1161 4.8558 -3.5077 11 1 3.4054 3.3126 -5.3558 12 1 1.6129 2.9697 -3.7590 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1597 1.1673 15 6 1.9925 1.3058 2.4723 16 8 2.3013 2.1814 3.5585 17 6 2.1291 1.6911 4.8148 18 6 1.6719 0.3947 4.9978 19 6 1.4978 -0.1026 6.2752 20 6 1.7782 0.6907 7.3723 21 6 2.2336 1.9851 7.1947 22 17 2.5841 2.9787 8.5745 23 6 2.4149 2.4861 5.9170 24 9 2.8652 3.7479 5.7426 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5816 1.6878 -2.0284 31 1 2.0954 3.1412 -1.1383 32 1 5.7171 2.5743 -4.0833 33 1 0.9446 1.0112 2.5303 34 1 2.6229 0.4185 2.5298 35 1 1.4527 -0.2266 4.1420 36 1 1.1421 -1.1124 6.4168 37 1 1.6408 0.2996 8.3695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186713649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:41 Heat of formation + Delta-G solvation = -88.457101 kcal Electronic energy + Delta-G solvation = -23555.042603 eV Core-core repulsion = 19659.872325 eV Total energy + Delta-G solvation = -3895.170278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.93010 -40.50018 -39.17608 -37.79356 -36.62616 -35.52186 -32.81213 -30.98342 -30.66466 -30.41038 -29.02228 -27.02065 -23.45460 -23.12515 -23.01514 -22.03712 -18.93324 -18.70846 -17.40510 -17.21385 -16.99511 -16.57730 -16.34442 -15.82094 -15.56255 -15.31008 -14.94304 -14.39093 -14.23204 -13.68771 -13.56621 -13.38194 -13.22281 -13.04384 -12.58896 -12.36344 -12.24898 -12.06429 -11.85645 -11.73030 -11.48495 -11.34326 -11.20887 -11.05541 -10.81010 -10.55985 -10.21385 -9.60172 -9.18107 -9.11840 -8.63085 -8.56344 -7.89029 -6.12828 -4.12565 0.56404 0.81448 1.57972 2.62845 3.06135 3.10036 3.26554 3.32220 3.34994 3.70469 3.92019 4.35358 4.36229 4.41506 4.62965 4.74279 4.81520 4.87119 4.97077 5.14937 5.20595 5.38528 5.43064 5.54489 5.55671 5.66841 5.80056 5.84497 6.01380 6.05481 6.25511 6.57983 6.84215 6.96464 7.20025 7.54466 8.03736 8.40199 8.75777 8.90074 9.46529 11.00430 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.002983 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.204062 B = 9382.912300 C =10141.577308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.512 6.512 15 C 0.040 3.960 16 O -0.274 6.274 17 C 0.117 3.883 18 C -0.182 4.182 19 C -0.075 4.075 20 C -0.126 4.126 21 C -0.038 4.038 22 Cl -0.044 7.044 23 C 0.079 3.921 24 F -0.115 7.115 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 -8.912 19.902 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.294 3.706 14 O -0.387 6.387 15 C -0.039 4.039 16 O -0.186 6.186 17 C 0.069 3.931 18 C -0.201 4.201 19 C -0.094 4.094 20 C -0.145 4.145 21 C -0.066 4.066 22 Cl -0.015 7.015 23 C 0.058 3.942 24 F -0.093 7.093 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.580 -7.895 19.769 24.233 hybrid contribution -0.356 0.522 -0.624 0.888 sum -11.935 -7.373 19.144 23.735 Atomic orbital electron populations 1.22264 0.96485 1.01848 1.02454 1.21530 0.93599 0.83637 1.03431 1.47862 1.64339 1.13495 1.06442 1.19707 0.97563 0.93462 0.79433 1.21304 0.95258 1.33295 1.07262 0.90691 1.24849 0.95015 0.95712 0.97338 1.69888 1.15102 1.44798 1.23563 0.86854 0.81371 0.81708 0.79784 1.19811 1.21003 1.19050 1.19623 0.79645 0.87161 0.84179 1.90749 1.43785 1.17562 1.86571 1.22829 1.02023 0.93445 0.85581 1.86284 1.81651 1.40091 1.10532 1.18932 0.96952 0.92454 0.84790 1.21339 1.04993 0.94231 0.99576 1.20957 0.97535 1.00027 0.90843 1.20867 1.01718 0.91282 1.00652 1.20718 1.04993 0.94023 0.86837 1.98396 1.93355 1.69291 1.40411 1.16581 1.05628 0.81603 0.90358 1.91582 1.86400 1.35474 1.95879 0.91882 0.91666 0.93045 0.89116 0.91570 0.94846 0.94408 0.92465 0.89105 0.88870 0.83671 0.83929 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 10.24 37.16 0.38 -1.48 16 2 C 0.10 1.39 5.93 -4.04 -0.02 1.37 16 3 N -0.59 -11.41 2.46 -175.06 -0.43 -11.84 16 4 C 0.22 5.17 4.23 -5.20 -0.02 5.15 16 5 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 6 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 9 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 13 C 0.51 10.22 7.75 -10.98 -0.09 10.14 16 14 O -0.51 -13.04 16.08 -14.35 -0.23 -13.28 16 15 C 0.04 0.56 3.77 36.01 0.14 0.69 16 16 O -0.27 -4.54 9.53 -39.53 -0.38 -4.92 16 17 C 0.12 1.54 6.69 -39.19 -0.26 1.28 16 18 C -0.18 -1.66 9.04 -39.44 -0.36 -2.02 16 19 C -0.08 -0.53 10.04 -39.59 -0.40 -0.93 16 20 C -0.13 -1.01 9.83 -39.53 -0.39 -1.40 16 21 C -0.04 -0.41 6.32 -39.46 -0.25 -0.66 16 22 Cl -0.04 -0.45 28.62 -51.86 -1.48 -1.94 16 23 C 0.08 1.08 7.28 -39.27 -0.29 0.80 16 24 F -0.12 -1.87 16.68 2.25 0.04 -1.83 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.51 7.22 -51.93 -0.38 0.14 16 28 H 0.09 1.31 8.07 -51.93 -0.42 0.90 16 29 H 0.07 0.70 6.44 -51.93 -0.33 0.37 16 30 H 0.03 0.74 7.13 -51.92 -0.37 0.37 16 31 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 32 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 33 H 0.09 0.95 6.71 -51.93 -0.35 0.60 16 34 H 0.09 1.07 6.92 -51.93 -0.36 0.71 16 35 H 0.15 0.97 6.30 -52.49 -0.33 0.64 16 36 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -35.61 336.48 -7.48 -43.09 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -4.17 Total: -3.96 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.99 Total: -0.40 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.34 Total: -38.47 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.61 Total: -18.19 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.48 Total: -1.94 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.61 -7.48 -43.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186713649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.370 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds