Wall clock time and date at job start Tue Mar 31 2020 11:15:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86798 * 120.00148 * 2 1
4 4 H 1.48499 * 109.47342 * 0.02562 * 3 2 1
5 5 H 1.48508 * 109.46943 * 120.00213 * 3 2 1
6 6 H 1.48496 * 109.47181 * 239.99934 * 3 2 1
7 7 C 1.37880 * 119.99661 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99586 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99978 * 359.97438 * 7 2 1
10 10 O 1.42906 * 112.94264 * 50.33345 * 9 7 2
11 11 C 1.53943 * 113.74340 * 278.74202 * 9 7 2
12 12 N 1.47807 * 86.03641 * 222.08374 * 11 9 7
13 13 C 1.34773 * 134.46079 * 204.63901 * 12 11 9
14 14 O 1.21553 * 120.00609 * 174.32640 * 13 12 11
15 15 C 1.47845 * 119.99841 * 354.33528 * 13 12 11
16 16 C 1.39598 * 120.14500 * 352.83594 * 15 13 12
17 17 C 1.37930 * 119.85820 * 179.79084 * 16 15 13
18 18 C 1.38389 * 120.14171 * 0.49248 * 17 16 15
19 19 C 1.38329 * 120.29148 * 359.74209 * 18 17 16
20 20 C 1.50704 * 119.92827 * 180.02562 * 19 18 17
21 21 F 1.39897 * 109.47006 * 270.01990 * 20 19 18
22 22 F 1.39898 * 109.46889 * 30.02170 * 20 19 18
23 23 F 1.39904 * 109.47051 * 150.02021 * 20 19 18
24 24 C 1.37983 * 120.14698 * 0.02562 * 19 18 17
25 25 C 1.47581 * 91.05289 * 24.54825 * 12 11 9
26 26 H 0.97004 * 119.99205 * 359.97438 * 1 2 3
27 27 H 0.96699 * 113.99873 * 309.66023 * 10 9 7
28 28 H 1.09002 * 113.76520 * 336.34655 * 11 9 7
29 29 H 1.08999 * 113.76914 * 107.74359 * 11 9 7
30 30 H 1.08002 * 120.06855 * 0.02562 * 16 15 13
31 31 H 1.07999 * 119.92897 * 180.20931 * 17 16 15
32 32 H 1.08002 * 119.85109 * 179.71886 * 18 17 16
33 33 H 1.08001 * 120.07479 * 179.97438 * 24 19 18
34 34 H 1.08999 * 113.77164 * 221.15212 * 25 12 11
35 35 H 1.08997 * 113.87229 * 89.76170 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2843 2.7465 0.0006
5 1 3.1031 1.6963 1.2125
6 1 3.1030 1.6963 -1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 8 0.2445 -2.5613 -1.0132
11 6 0.7561 -2.9292 1.3923
12 7 1.1918 -4.2900 1.0141
13 6 0.8426 -5.5338 1.3980
14 8 1.3113 -6.4999 0.8283
15 6 -0.1110 -5.7233 2.5119
16 6 -0.5362 -4.6274 3.2648
17 6 -1.4292 -4.8103 4.2999
18 6 -1.8958 -6.0783 4.5992
19 6 -1.4747 -7.1692 3.8602
20 6 -1.9885 -8.5464 4.1929
21 9 -1.1397 -9.1472 5.1287
22 9 -3.2770 -8.4465 4.7285
23 9 -2.0256 -9.3237 3.0303
24 6 -0.5853 -6.9993 2.8191
25 6 2.1607 -3.7402 0.0461
26 1 -0.4849 0.8401 0.0004
27 1 -0.3475 -1.7969 -1.0267
28 1 1.3274 -2.4975 2.2141
29 1 -0.3215 -2.8325 1.5248
30 1 -0.1695 -3.6378 3.0348
31 1 -1.7615 -3.9628 4.8810
32 1 -2.5914 -6.2168 5.4137
33 1 -0.2569 -7.8519 2.2431
34 1 2.2025 -4.2899 -0.8942
35 1 3.1461 -3.5468 0.4698
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000186823529.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:15:35
Heat of formation + Delta-G solvation = -165.420840 kcal
Electronic energy + Delta-G solvation = -25945.323477 eV
Core-core repulsion = 21495.019120 eV
Total energy + Delta-G solvation = -4450.304357 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.087 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-50.29324 -47.80937 -47.74964 -40.25233 -38.82139 -37.26197 -34.12918 -32.39040
-32.28703 -31.36372 -28.68634 -26.40052 -25.62838 -25.38067 -23.35206 -22.23513
-20.36272 -19.25864 -18.62231 -18.47893 -18.05155 -17.38405 -16.65995 -16.02035
-15.74391 -15.19165 -14.91670 -14.82071 -14.64095 -14.41499 -14.24413 -14.18005
-14.11832 -13.90991 -13.86047 -13.41780 -12.96699 -12.89343 -12.54691 -12.46305
-12.09642 -11.85806 -11.65993 -11.42111 -11.12916 -11.07011 -10.60047 -10.39145
-9.81549 -9.41474 -9.37345 -9.19962 -8.85558 -8.51503 -7.98567 -6.47918
-4.58664 0.62216 0.93100 2.49414 2.87729 3.10838 3.17439 3.18966
3.30147 3.57783 3.75703 3.89991 4.11881 4.29091 4.54395 4.68317
4.75303 4.88083 5.00634 5.16538 5.31953 5.49908 5.65237 5.77085
5.88395 6.03517 6.09361 6.14641 6.26333 6.30943 6.42890 6.49368
6.61933 6.97596 7.54359 7.71871 8.27461 8.44832 8.55437 9.12880
9.33271 10.58791
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.026770 B = 0.003178 C = 0.003000
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1045.689302 B = 8808.783918 C = 9332.058794
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.074 3.926
3 Si 0.908 3.092
4 H -0.284 1.284
5 H -0.273 1.273
6 H -0.273 1.273
7 C -0.540 4.540
8 H 0.072 0.928
9 C 0.241 3.759
10 O -0.571 6.571
11 C 0.068 3.932
12 N -0.625 5.625
13 C 0.569 3.431
14 O -0.556 6.556
15 C -0.119 4.119
16 C -0.064 4.064
17 C -0.127 4.127
18 C -0.055 4.055
19 C -0.198 4.198
20 C 0.512 3.488
21 F -0.177 7.177
22 F -0.178 7.178
23 F -0.175 7.175
24 C -0.018 4.018
25 C 0.113 3.887
26 H 0.274 0.726
27 H 0.392 0.608
28 H 0.088 0.912
29 H 0.076 0.924
30 H 0.155 0.845
31 H 0.141 0.859
32 H 0.137 0.863
33 H 0.147 0.853
34 H 0.074 0.926
35 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.663 -7.852 10.523 13.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.129 4.129
3 Si 0.735 3.265
4 H -0.210 1.210
5 H -0.199 1.199
6 H -0.198 1.198
7 C -0.578 4.578
8 H 0.090 0.910
9 C 0.199 3.801
10 O -0.383 6.383
11 C -0.055 4.055
12 N -0.357 5.357
13 C 0.359 3.641
14 O -0.437 6.437
15 C -0.122 4.122
16 C -0.082 4.082
17 C -0.145 4.145
18 C -0.073 4.073
19 C -0.199 4.199
20 C 0.458 3.542
21 F -0.158 7.158
22 F -0.159 7.159
23 F -0.156 7.156
24 C -0.037 4.037
25 C -0.008 4.008
26 H 0.085 0.915
27 H 0.247 0.753
28 H 0.106 0.894
29 H 0.094 0.906
30 H 0.172 0.828
31 H 0.159 0.841
32 H 0.155 0.845
33 H 0.164 0.836
34 H 0.092 0.908
35 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -4.357 -9.011 10.139 14.247
hybrid contribution -0.065 1.172 0.377 1.233
sum -4.422 -7.839 10.516 13.841
Atomic orbital electron populations
1.69390 1.06163 1.28401 1.49790 1.25065 0.95034 0.99879 0.92941
0.86384 0.79517 0.81570 0.79048 1.20981 1.19870 1.19815 1.21460
0.93959 0.89847 1.52517 0.90986 1.19827 0.85649 0.91266 0.83343
1.86081 1.47034 1.49882 1.55279 1.24547 1.00156 0.77506 1.03244
1.50099 1.39935 1.04431 1.41236 1.17715 0.81642 0.82203 0.82576
1.90728 1.57200 1.39266 1.56456 1.20038 1.00326 0.93549 0.98267
1.22373 0.93347 1.00121 0.92350 1.21170 0.98109 0.96929 0.98296
1.21100 0.97010 0.91764 0.97461 1.19849 1.05391 0.92125 1.02565
1.18222 0.75309 0.86237 0.74454 1.93224 1.70852 1.85436 1.66324
1.93180 1.39784 1.96370 1.86595 1.93211 1.96200 1.77311 1.48896
1.21009 0.91574 0.97905 0.93216 1.23512 0.93234 0.92633 0.91445
0.91543 0.75293 0.89443 0.90573 0.82804 0.84105 0.84474 0.83560
0.90787 0.89224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -21.43 11.20 55.43 0.62 -20.81 16
2 C 0.07 1.73 5.40 -17.82 -0.10 1.64 16
3 Si 0.91 18.52 29.54 -169.99 -5.02 13.50 16
4 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16
5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16
6 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16
7 C -0.54 -12.75 8.61 -34.44 -0.30 -13.05 16
8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16
9 C 0.24 5.42 1.40 -90.85 -0.13 5.30 16
10 O -0.57 -14.02 13.49 -35.23 -0.48 -14.50 16
11 C 0.07 1.32 5.60 -2.84 -0.02 1.30 16
12 N -0.62 -12.53 3.60 -179.25 -0.64 -13.18 16
13 C 0.57 11.37 7.99 -12.33 -0.10 11.28 16
14 O -0.56 -12.58 17.10 5.32 0.09 -12.49 16
15 C -0.12 -1.94 5.87 -104.97 -0.62 -2.56 16
16 C -0.06 -0.89 9.08 -39.19 -0.36 -1.24 16
17 C -0.13 -1.40 10.03 -39.64 -0.40 -1.80 16
18 C -0.05 -0.59 9.39 -39.49 -0.37 -0.96 16
19 C -0.20 -2.50 5.45 -104.68 -0.57 -3.07 16
20 C 0.51 6.12 3.36 36.01 0.12 6.24 16
21 F -0.18 -2.14 17.30 2.25 0.04 -2.10 16
22 F -0.18 -2.01 16.45 2.25 0.04 -1.97 16
23 F -0.17 -2.25 16.46 2.25 0.04 -2.21 16
24 C -0.02 -0.27 8.94 -39.18 -0.35 -0.62 16
25 C 0.11 2.34 8.23 -2.97 -0.02 2.32 16
26 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16
27 H 0.39 9.67 6.60 45.56 0.30 9.97 16
28 H 0.09 1.58 7.99 -51.93 -0.42 1.17 16
29 H 0.08 1.46 6.92 -51.93 -0.36 1.10 16
30 H 0.15 2.16 4.11 -52.49 -0.22 1.94 16
31 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16
32 H 0.14 1.12 7.59 -52.49 -0.40 0.72 16
33 H 0.15 2.21 7.21 -52.49 -0.38 1.83 16
34 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16
35 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16
LS Contribution 316.64 15.07 4.77 4.77
Total: -1.00 -26.89 316.64 -6.02 -32.91
By element:
Atomic # 1 Polarization: 13.57 SS G_CDS: -2.28 Total: 11.29 kcal
Atomic # 6 Polarization: 7.97 SS G_CDS: -3.20 Total: 4.77 kcal
Atomic # 7 Polarization: -33.96 SS G_CDS: -0.02 Total: -33.98 kcal
Atomic # 8 Polarization: -26.60 SS G_CDS: -0.38 Total: -26.98 kcal
Atomic # 9 Polarization: -6.39 SS G_CDS: 0.11 Total: -6.28 kcal
Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal
Total LS contribution 4.77 Total: 4.77 kcal
Total: -26.89 -6.02 -32.91 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186823529.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -132.507 kcal
(2) G-P(sol) polarization free energy of solvation -26.893 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.400 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.914 kcal
(6) G-S(sol) free energy of system = (1) + (5) -165.421 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds