Wall clock time and date at job start Tue Mar 31 2020 11:15:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86798 * 120.00148 * 2 1
4 4 H 1.48499 * 109.47342 * 0.02562 * 3 2 1
5 5 H 1.48508 * 109.46943 * 120.00213 * 3 2 1
6 6 H 1.48496 * 109.47181 * 239.99934 * 3 2 1
7 7 C 1.37880 * 119.99661 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99586 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99978 * 359.97438 * 7 2 1
10 10 O 1.42906 * 112.94264 * 50.33345 * 9 7 2
11 11 C 1.53943 * 113.74340 * 278.74202 * 9 7 2
12 12 N 1.47807 * 86.03641 * 222.08374 * 11 9 7
13 13 C 1.34773 * 134.46079 * 204.63901 * 12 11 9
14 14 O 1.21553 * 120.00609 * 174.32640 * 13 12 11
15 15 C 1.47845 * 119.99841 * 354.33528 * 13 12 11
16 16 C 1.39598 * 120.14500 * 352.83594 * 15 13 12
17 17 C 1.37930 * 119.85820 * 179.79084 * 16 15 13
18 18 C 1.38389 * 120.14171 * 0.49248 * 17 16 15
19 19 C 1.38329 * 120.29148 * 359.74209 * 18 17 16
20 20 C 1.50704 * 119.92827 * 180.02562 * 19 18 17
21 21 F 1.39897 * 109.47006 * 270.01990 * 20 19 18
22 22 F 1.39898 * 109.46889 * 30.02170 * 20 19 18
23 23 F 1.39904 * 109.47051 * 150.02021 * 20 19 18
24 24 C 1.37983 * 120.14698 * 0.02562 * 19 18 17
25 25 C 1.47581 * 91.05289 * 24.54825 * 12 11 9
26 26 H 0.97004 * 119.99205 * 359.97438 * 1 2 3
27 27 H 0.96699 * 113.99873 * 309.66023 * 10 9 7
28 28 H 1.09002 * 113.76520 * 336.34655 * 11 9 7
29 29 H 1.08999 * 113.76914 * 107.74359 * 11 9 7
30 30 H 1.08002 * 120.06855 * 0.02562 * 16 15 13
31 31 H 1.07999 * 119.92897 * 180.20931 * 17 16 15
32 32 H 1.08002 * 119.85109 * 179.71886 * 18 17 16
33 33 H 1.08001 * 120.07479 * 179.97438 * 24 19 18
34 34 H 1.08999 * 113.77164 * 221.15212 * 25 12 11
35 35 H 1.08997 * 113.87229 * 89.76170 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2843 2.7465 0.0006
5 1 3.1031 1.6963 1.2125
6 1 3.1030 1.6963 -1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 8 0.2445 -2.5613 -1.0132
11 6 0.7561 -2.9292 1.3923
12 7 1.1918 -4.2900 1.0141
13 6 0.8426 -5.5338 1.3980
14 8 1.3113 -6.4999 0.8283
15 6 -0.1110 -5.7233 2.5119
16 6 -0.5362 -4.6274 3.2648
17 6 -1.4292 -4.8103 4.2999
18 6 -1.8958 -6.0783 4.5992
19 6 -1.4747 -7.1692 3.8602
20 6 -1.9885 -8.5464 4.1929
21 9 -1.1397 -9.1472 5.1287
22 9 -3.2770 -8.4465 4.7285
23 9 -2.0256 -9.3237 3.0303
24 6 -0.5853 -6.9993 2.8191
25 6 2.1607 -3.7402 0.0461
26 1 -0.4849 0.8401 0.0004
27 1 -0.3475 -1.7969 -1.0267
28 1 1.3274 -2.4975 2.2141
29 1 -0.3215 -2.8325 1.5248
30 1 -0.1695 -3.6378 3.0348
31 1 -1.7615 -3.9628 4.8810
32 1 -2.5914 -6.2168 5.4137
33 1 -0.2569 -7.8519 2.2431
34 1 2.2025 -4.2899 -0.8942
35 1 3.1461 -3.5468 0.4698
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000186823529.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:15:34
Heat of formation + Delta-G solvation = -182.020521 kcal
Electronic energy + Delta-G solvation = -25946.043293 eV
Core-core repulsion = 21495.019120 eV
Total energy + Delta-G solvation = -4451.024173 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.087 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-51.24627 -48.75950 -48.70491 -41.66086 -40.13438 -38.84271 -35.90065 -34.14259
-33.47529 -32.44096 -30.29296 -27.65405 -27.30684 -26.72146 -24.61084 -23.25274
-21.86095 -20.66679 -19.57551 -19.55385 -19.40831 -18.99081 -17.95486 -17.39098
-17.05050 -16.81523 -16.43849 -16.09428 -15.83815 -15.60581 -15.39349 -15.20225
-15.12921 -15.01050 -14.86254 -14.78845 -14.48710 -14.26462 -13.94285 -13.70573
-13.61676 -13.40276 -13.04704 -12.78135 -12.73532 -12.36154 -12.21534 -12.20075
-11.45795 -11.06261 -10.64027 -10.45654 -10.29922 -10.20467 -9.62090 -8.25367
-6.42070 -0.44703 -0.11531 1.50131 1.50258 1.53702 1.59435 1.62835
1.82310 2.42258 2.51118 2.59803 2.90778 2.97770 3.29410 3.33224
3.67343 3.74290 3.87397 3.96465 4.09504 4.20639 4.28965 4.46594
4.57335 4.67100 4.73462 4.81258 4.87711 5.00106 5.08921 5.13991
5.22521 5.55889 5.73902 5.93282 6.63306 6.70766 6.98952 7.31252
7.44941 8.80508
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.026770 B = 0.003178 C = 0.003000
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1045.689302 B = 8808.783918 C = 9332.058794
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.913 5.913
2 C 0.038 3.962
3 Si 0.965 3.035
4 H -0.283 1.283
5 H -0.266 1.266
6 H -0.279 1.279
7 C -0.558 4.558
8 H 0.073 0.927
9 C 0.220 3.780
10 O -0.587 6.587
11 C 0.087 3.913
12 N -0.627 5.627
13 C 0.562 3.438
14 O -0.594 6.594
15 C -0.145 4.145
16 C -0.067 4.067
17 C -0.113 4.113
18 C -0.038 4.038
19 C -0.199 4.199
20 C 0.517 3.483
21 F -0.177 7.177
22 F -0.170 7.170
23 F -0.183 7.183
24 C -0.028 4.028
25 C 0.111 3.889
26 H 0.276 0.724
27 H 0.388 0.612
28 H 0.104 0.896
29 H 0.079 0.921
30 H 0.152 0.848
31 H 0.181 0.819
32 H 0.174 0.826
33 H 0.132 0.868
34 H 0.059 0.941
35 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.626 -6.934 12.934 15.717
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.163 4.163
3 Si 0.791 3.209
4 H -0.209 1.209
5 H -0.191 1.191
6 H -0.204 1.204
7 C -0.596 4.596
8 H 0.091 0.909
9 C 0.178 3.822
10 O -0.399 6.399
11 C -0.035 4.035
12 N -0.359 5.359
13 C 0.354 3.646
14 O -0.478 6.478
15 C -0.147 4.147
16 C -0.085 4.085
17 C -0.130 4.130
18 C -0.056 4.056
19 C -0.201 4.201
20 C 0.463 3.537
21 F -0.158 7.158
22 F -0.151 7.151
23 F -0.164 7.164
24 C -0.047 4.047
25 C -0.011 4.011
26 H 0.086 0.914
27 H 0.243 0.757
28 H 0.122 0.878
29 H 0.098 0.902
30 H 0.169 0.831
31 H 0.198 0.802
32 H 0.192 0.808
33 H 0.150 0.850
34 H 0.077 0.923
35 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges -5.323 -8.092 12.564 15.865
hybrid contribution 0.189 0.847 -0.359 0.939
sum -5.134 -7.245 12.206 15.094
Atomic orbital electron populations
1.69450 1.06966 1.29013 1.49895 1.25673 0.95724 1.02301 0.92592
0.85489 0.78318 0.78275 0.78830 1.20868 1.19106 1.20417 1.21672
0.94180 0.90619 1.53099 0.90934 1.20121 0.85836 0.91691 0.84508
1.86071 1.47516 1.49746 1.56579 1.24368 1.00512 0.76744 1.01835
1.50109 1.39821 1.04874 1.41093 1.18354 0.81742 0.81439 0.83059
1.90688 1.58804 1.40228 1.58096 1.19786 1.01417 0.95125 0.98420
1.22395 0.94076 0.99033 0.93008 1.21573 0.96187 0.98308 0.96960
1.21566 0.96074 0.90816 0.97123 1.19940 1.04869 0.93178 1.02100
1.18094 0.75530 0.85816 0.74224 1.93227 1.70945 1.85421 1.66248
1.93197 1.39177 1.96307 1.86416 1.93200 1.96249 1.77515 1.49465
1.20915 0.92609 0.96999 0.94212 1.23548 0.94181 0.91936 0.91473
0.91394 0.75748 0.87769 0.90234 0.83110 0.80213 0.80837 0.84982
0.92286 0.87306
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -43.10 11.20 21.45 0.24 -42.86 16
2 C 0.04 1.77 5.40 84.65 0.46 2.23 16
3 Si 0.97 37.22 29.54 68.60 2.03 39.24 16
4 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16
5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16
6 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16
7 C -0.56 -26.20 8.61 25.60 0.22 -25.98 16
8 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16
9 C 0.22 9.95 1.40 -10.88 -0.02 9.93 16
10 O -0.59 -29.44 13.49 -148.98 -2.01 -31.45 16
11 C 0.09 3.35 5.60 86.44 0.48 3.84 16
12 N -0.63 -25.46 3.60 -843.15 -3.03 -28.50 16
13 C 0.56 23.03 7.99 86.79 0.69 23.73 16
14 O -0.59 -28.07 17.10 -3.88 -0.07 -28.14 16
15 C -0.14 -4.70 5.87 -20.09 -0.12 -4.82 16
16 C -0.07 -1.73 9.08 22.53 0.20 -1.52 16
17 C -0.11 -2.03 10.03 22.23 0.22 -1.81 16
18 C -0.04 -0.66 9.39 22.33 0.21 -0.45 16
19 C -0.20 -4.62 5.45 -19.90 -0.11 -4.73 16
20 C 0.52 11.40 3.36 71.24 0.24 11.64 16
21 F -0.18 -3.97 17.30 44.97 0.78 -3.19 16
22 F -0.17 -3.33 16.45 44.97 0.74 -2.59 16
23 F -0.18 -4.57 16.46 44.97 0.74 -3.83 16
24 C -0.03 -0.83 8.94 22.53 0.20 -0.63 16
25 C 0.11 4.65 8.23 86.49 0.71 5.37 16
26 H 0.28 12.43 8.31 -92.71 -0.77 11.66 16
27 H 0.39 19.52 6.60 -74.06 -0.49 19.03 16
28 H 0.10 3.64 7.99 -2.39 -0.02 3.62 16
29 H 0.08 2.99 6.92 -2.39 -0.02 2.97 16
30 H 0.15 3.95 4.11 -2.91 -0.01 3.94 16
31 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16
32 H 0.17 1.85 7.59 -2.91 -0.02 1.82 16
33 H 0.13 4.18 7.21 -2.91 -0.02 4.16 16
34 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16
35 H 0.11 4.08 8.09 -2.39 -0.02 4.06 16
Total: -1.00 -58.52 316.64 3.50 -55.01
By element:
Atomic # 1 Polarization: 28.82 SS G_CDS: 0.69 Total: 29.50 kcal
Atomic # 6 Polarization: 13.39 SS G_CDS: 3.40 Total: 16.79 kcal
Atomic # 7 Polarization: -68.56 SS G_CDS: -2.79 Total: -71.36 kcal
Atomic # 8 Polarization: -57.51 SS G_CDS: -2.08 Total: -59.58 kcal
Atomic # 9 Polarization: -11.87 SS G_CDS: 2.26 Total: -9.61 kcal
Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.24 kcal
Total: -58.52 3.50 -55.01 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186823529.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -127.006 kcal
(2) G-P(sol) polarization free energy of solvation -58.519 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.525 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.014 kcal
(6) G-S(sol) free energy of system = (1) + (5) -182.021 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds