Wall clock time and date at job start Tue Mar 31 2020 10:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76198 * 102.99976 * 2 1 4 4 C 1.39000 * 120.07925 * 0.02562 * 3 2 1 5 5 C 1.38066 * 119.91885 * 179.97438 * 4 3 2 6 6 C 1.38322 * 120.08057 * 0.02562 * 5 4 3 7 7 C 1.38287 * 120.16053 * 0.02562 * 6 5 4 8 8 C 1.38106 * 120.07974 * 359.67293 * 7 6 5 9 9 S 1.76194 * 120.03862 * 180.30137 * 8 7 6 10 10 O 1.42098 * 106.40486 * 2.58909 * 9 8 7 11 11 O 1.42105 * 106.40113 * 135.51168 * 9 8 7 12 12 N 1.65606 * 107.21686 * 249.04695 * 9 8 7 13 13 C 1.46500 * 119.99715 * 83.42806 * 12 9 8 14 14 C 1.46491 * 120.00128 * 263.42757 * 12 9 8 15 15 H 1.09002 * 109.47555 * 359.97438 * 14 12 9 16 16 C 1.52997 * 109.47414 * 120.00236 * 14 12 9 17 17 C 1.50701 * 109.47223 * 240.00294 * 14 12 9 18 18 H 1.07997 * 120.00144 * 359.97438 * 17 14 12 19 19 C 1.37883 * 120.00097 * 180.02562 * 17 14 12 20 20 N 1.31510 * 119.99808 * 179.97438 * 19 17 14 21 21 Si 1.86799 * 119.99931 * 359.97438 * 19 17 14 22 22 H 1.48496 * 109.47309 * 90.00149 * 21 19 17 23 23 H 1.48504 * 109.46985 * 210.00329 * 21 19 17 24 24 H 1.48503 * 109.47109 * 329.99868 * 21 19 17 25 25 H 1.08997 * 109.47146 * 299.99773 * 1 2 3 26 26 H 1.09003 * 109.46910 * 60.00003 * 1 2 3 27 27 H 1.08996 * 109.46953 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.04096 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.95924 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.91587 * 179.97438 * 6 5 4 31 31 H 1.07994 * 119.95784 * 179.97438 * 7 6 5 32 32 H 1.09006 * 109.47106 * 85.13583 * 13 12 9 33 33 H 1.08997 * 109.47284 * 205.12764 * 13 12 9 34 34 H 1.08991 * 109.47530 * 325.13565 * 13 12 9 35 35 H 1.08997 * 109.47475 * 180.02562 * 16 14 12 36 36 H 1.09009 * 109.46853 * 300.00102 * 16 14 12 37 37 H 1.09000 * 109.47374 * 59.99743 * 16 14 12 38 38 H 0.97000 * 119.99986 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5094 4.0106 0.0011 6 6 2.8328 4.4132 0.0005 7 6 3.8455 3.4715 -0.0011 8 6 3.5386 2.1250 0.0047 9 16 4.8298 0.9261 0.0106 10 8 6.0504 1.6512 0.0697 11 8 4.4616 -0.0554 0.9701 12 7 4.8049 0.1716 -1.4633 13 6 5.4830 0.7814 -2.6099 14 6 4.1049 -1.1056 -1.6207 15 1 3.6659 -1.3993 -0.6672 16 6 2.9989 -0.9555 -2.6672 17 6 5.0815 -2.1618 -2.0699 18 1 6.1197 -1.9070 -2.2233 19 6 4.6494 -3.4531 -2.2861 20 7 5.5016 -4.3746 -2.6786 21 14 2.8535 -3.8937 -2.0215 22 1 2.1033 -3.6950 -3.2875 23 1 2.7490 -5.3144 -1.6019 24 1 2.2805 -3.0220 -0.9645 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.1617 2.3526 0.0005 29 1 0.7211 4.7488 0.0011 30 1 3.0757 5.4656 0.0005 31 1 4.8776 3.7895 -0.0019 32 1 6.5356 0.4984 -2.6021 33 1 5.0201 0.4331 -3.5332 34 1 5.3979 1.8662 -2.5475 35 1 2.4778 -1.9057 -2.7839 36 1 2.2925 -0.1916 -2.3422 37 1 3.4382 -0.6621 -3.6206 38 1 5.1975 -5.2830 -2.8311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187151381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:20 Heat of formation + Delta-G solvation = -20.668790 kcal Electronic energy + Delta-G solvation = -23421.853819 eV Core-core repulsion = 20097.879945 eV Total energy + Delta-G solvation = -3323.973874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.06492 -36.79622 -36.36839 -35.28738 -32.47033 -31.55806 -31.32503 -29.99323 -28.89777 -25.76114 -24.98472 -23.33138 -22.96473 -20.80490 -18.84202 -17.91323 -17.25669 -16.87676 -16.26491 -15.86030 -15.28054 -15.06859 -14.56837 -14.40645 -14.13400 -13.98397 -13.64794 -13.39281 -12.99927 -12.81830 -12.65252 -12.36694 -12.24891 -12.09310 -11.89360 -11.62217 -11.49756 -11.38168 -11.13099 -10.99839 -10.81309 -10.41218 -10.10991 -9.87842 -9.85350 -9.49452 -9.40779 -9.22995 -8.58219 -8.05910 -7.31471 -6.08839 -4.08198 0.65657 0.96773 1.10018 1.44729 2.29650 3.24268 3.26479 3.37422 3.39200 3.64512 4.23384 4.38812 4.52591 4.72482 4.90910 4.96145 4.98894 5.08822 5.22530 5.28773 5.49319 5.52668 5.57814 5.68113 5.87325 6.01000 6.07690 6.20449 6.30014 6.32347 6.46884 6.60722 6.62608 6.67383 6.92675 7.35840 7.45086 7.69441 8.51495 8.96083 9.51386 11.04099 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.007039 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.955580 B = 3976.948435 C = 4965.157829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 S -0.038 6.038 3 C 0.002 3.998 4 C -0.162 4.162 5 C -0.052 4.052 6 C -0.156 4.156 7 C -0.004 4.004 8 C -0.666 4.666 9 S 2.675 3.325 10 O -0.968 6.968 11 O -0.937 6.937 12 N -0.970 5.970 13 C 0.107 3.893 14 C 0.242 3.758 15 H 0.070 0.930 16 C -0.167 4.167 17 C -0.520 4.520 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.895 5.895 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.256 1.256 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.145 0.855 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.219 15.872 2.959 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.342 4.342 2 S 0.211 5.789 3 C -0.113 4.113 4 C -0.187 4.187 5 C -0.072 4.072 6 C -0.178 4.178 7 C -0.025 4.025 8 C -0.758 4.758 9 S 2.764 3.236 10 O -0.958 6.958 11 O -0.927 6.927 12 N -0.810 5.810 13 C -0.039 4.039 14 C 0.137 3.863 15 H 0.088 0.912 16 C -0.226 4.226 17 C -0.559 4.559 18 H 0.101 0.899 19 C -0.128 4.128 20 N -0.533 5.533 21 Si 0.705 3.295 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.181 1.181 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.130 0.870 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.044 14.401 3.610 17.925 hybrid contribution -2.474 1.155 -0.327 2.750 sum -12.518 15.556 3.283 20.236 Atomic orbital electron populations 1.23924 0.97392 1.07504 1.05424 1.87606 1.04483 0.98480 1.88347 1.21695 0.95029 0.98713 0.95875 1.21234 0.98255 0.93312 1.05879 1.21270 0.96778 0.95305 0.93836 1.21234 0.92804 0.99748 1.04044 1.20945 1.00534 0.90507 0.90483 1.31126 1.12691 1.13171 1.18769 1.02544 0.73889 0.73217 0.73987 1.93515 1.41332 1.74368 1.86563 1.93602 1.83526 1.57305 1.58242 1.57106 1.66350 1.31833 1.25717 1.21246 0.97699 0.94906 0.90023 1.19217 0.90547 0.79966 0.96585 0.91248 1.22669 0.98993 1.00067 1.00853 1.21205 0.96683 0.92184 1.45873 0.89915 1.24871 0.97357 0.96114 0.94416 1.69871 1.34529 1.02682 1.46193 0.87034 0.86208 0.77299 0.78976 1.20466 1.22270 1.18115 0.89639 0.89638 0.87033 0.85296 0.85380 0.85154 0.83758 0.92463 0.90303 0.93393 0.93389 0.93551 0.92715 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 9.15 101.05 0.92 -1.01 16 2 S -0.04 -0.64 14.08 -107.50 -1.51 -2.15 16 3 C 0.00 0.03 6.10 -39.03 -0.24 -0.20 16 4 C -0.16 -1.97 9.36 -39.36 -0.37 -2.34 16 5 C -0.05 -0.54 10.04 -39.61 -0.40 -0.93 16 6 C -0.16 -1.71 10.04 -39.53 -0.40 -2.11 16 7 C 0.00 -0.06 9.54 -39.61 -0.38 -0.43 16 8 C -0.67 -11.01 5.94 -39.36 -0.23 -11.24 16 9 S 2.68 53.69 5.10 -107.50 -0.55 53.14 16 10 O -0.97 -20.07 16.35 -57.17 -0.93 -21.01 16 11 O -0.94 -21.37 14.58 -57.17 -0.83 -22.21 16 12 N -0.97 -20.05 3.06 -115.86 -0.35 -20.40 16 13 C 0.11 1.89 9.48 59.85 0.57 2.46 16 14 C 0.24 5.62 1.26 -69.09 -0.09 5.53 16 15 H 0.07 1.71 3.97 -51.93 -0.21 1.50 16 16 C -0.17 -3.42 8.04 37.16 0.30 -3.12 16 17 C -0.52 -14.33 8.95 -34.44 -0.31 -14.64 16 18 H 0.08 2.47 7.89 -52.49 -0.41 2.05 16 19 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16 20 N -0.89 -26.97 13.96 55.43 0.77 -26.19 16 21 Si 0.87 21.20 24.37 -169.99 -4.14 17.06 16 22 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 23 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.26 -5.85 6.53 56.52 0.37 -5.48 16 25 H 0.08 0.78 7.75 -51.93 -0.40 0.38 16 26 H 0.08 0.80 7.75 -51.92 -0.40 0.40 16 27 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.13 1.24 5.88 -52.49 -0.31 0.93 16 29 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 31 H 0.14 1.81 7.33 -52.49 -0.38 1.43 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.33 6.44 -51.93 -0.33 0.99 16 34 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 36 H 0.05 0.82 5.93 -51.88 -0.31 0.51 16 37 H 0.05 1.07 6.66 -51.93 -0.35 0.72 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 317.02 15.07 4.78 4.78 Total: -1.00 -33.70 317.02 -8.06 -41.76 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.57 Total: 1.24 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -0.71 Total: -26.01 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.42 Total: -46.60 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -1.77 Total: -43.22 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.14 Total: 17.06 kcal Atomic # 16 Polarization: 53.05 SS G_CDS: -2.06 Total: 50.99 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.70 -8.06 -41.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187151381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.089 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds