Wall clock time and date at job start Tue Mar 31 2020 10:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76198 * 102.99976 * 2 1 4 4 C 1.39000 * 120.07925 * 0.02562 * 3 2 1 5 5 C 1.38066 * 119.91885 * 179.97438 * 4 3 2 6 6 C 1.38322 * 120.08057 * 0.02562 * 5 4 3 7 7 C 1.38287 * 120.16053 * 0.02562 * 6 5 4 8 8 C 1.38106 * 120.07974 * 359.67293 * 7 6 5 9 9 S 1.76194 * 120.03862 * 180.30137 * 8 7 6 10 10 O 1.42098 * 106.40486 * 2.58909 * 9 8 7 11 11 O 1.42105 * 106.40113 * 135.51168 * 9 8 7 12 12 N 1.65606 * 107.21686 * 249.04695 * 9 8 7 13 13 C 1.46500 * 119.99715 * 83.42806 * 12 9 8 14 14 C 1.46491 * 120.00128 * 263.42757 * 12 9 8 15 15 H 1.09002 * 109.47555 * 359.97438 * 14 12 9 16 16 C 1.52997 * 109.47414 * 120.00236 * 14 12 9 17 17 C 1.50701 * 109.47223 * 240.00294 * 14 12 9 18 18 H 1.07997 * 120.00144 * 359.97438 * 17 14 12 19 19 C 1.37883 * 120.00097 * 180.02562 * 17 14 12 20 20 N 1.31510 * 119.99808 * 179.97438 * 19 17 14 21 21 Si 1.86799 * 119.99931 * 359.97438 * 19 17 14 22 22 H 1.48496 * 109.47309 * 90.00149 * 21 19 17 23 23 H 1.48504 * 109.46985 * 210.00329 * 21 19 17 24 24 H 1.48503 * 109.47109 * 329.99868 * 21 19 17 25 25 H 1.08997 * 109.47146 * 299.99773 * 1 2 3 26 26 H 1.09003 * 109.46910 * 60.00003 * 1 2 3 27 27 H 1.08996 * 109.46953 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.04096 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.95924 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.91587 * 179.97438 * 6 5 4 31 31 H 1.07994 * 119.95784 * 179.97438 * 7 6 5 32 32 H 1.09006 * 109.47106 * 85.13583 * 13 12 9 33 33 H 1.08997 * 109.47284 * 205.12764 * 13 12 9 34 34 H 1.08991 * 109.47530 * 325.13565 * 13 12 9 35 35 H 1.08997 * 109.47475 * 180.02562 * 16 14 12 36 36 H 1.09009 * 109.46853 * 300.00102 * 16 14 12 37 37 H 1.09000 * 109.47374 * 59.99743 * 16 14 12 38 38 H 0.97000 * 119.99986 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5094 4.0106 0.0011 6 6 2.8328 4.4132 0.0005 7 6 3.8455 3.4715 -0.0011 8 6 3.5386 2.1250 0.0047 9 16 4.8298 0.9261 0.0106 10 8 6.0504 1.6512 0.0697 11 8 4.4616 -0.0554 0.9701 12 7 4.8049 0.1716 -1.4633 13 6 5.4830 0.7814 -2.6099 14 6 4.1049 -1.1056 -1.6207 15 1 3.6659 -1.3993 -0.6672 16 6 2.9989 -0.9555 -2.6672 17 6 5.0815 -2.1618 -2.0699 18 1 6.1197 -1.9070 -2.2233 19 6 4.6494 -3.4531 -2.2861 20 7 5.5016 -4.3746 -2.6786 21 14 2.8535 -3.8937 -2.0215 22 1 2.1033 -3.6950 -3.2875 23 1 2.7490 -5.3144 -1.6019 24 1 2.2805 -3.0220 -0.9645 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.1617 2.3526 0.0005 29 1 0.7211 4.7488 0.0011 30 1 3.0757 5.4656 0.0005 31 1 4.8776 3.7895 -0.0019 32 1 6.5356 0.4984 -2.6021 33 1 5.0201 0.4331 -3.5332 34 1 5.3979 1.8662 -2.5475 35 1 2.4778 -1.9057 -2.7839 36 1 2.2925 -0.1916 -2.3422 37 1 3.4382 -0.6621 -3.6206 38 1 5.1975 -5.2830 -2.8311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187151381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:20 Heat of formation + Delta-G solvation = -45.756188 kcal Electronic energy + Delta-G solvation = -23422.941690 eV Core-core repulsion = 20097.879945 eV Total energy + Delta-G solvation = -3325.061745 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.02876 -38.41966 -38.03793 -36.90019 -34.52432 -32.51671 -32.29875 -31.76724 -29.72680 -27.31960 -26.95361 -24.37211 -23.92591 -22.57400 -20.13521 -19.32122 -19.01560 -18.27343 -17.87902 -17.36145 -16.70744 -16.24174 -15.99292 -15.43472 -15.32868 -15.17662 -14.96979 -14.91054 -14.46897 -14.14874 -13.90169 -13.83896 -13.58874 -13.44807 -13.26886 -13.17331 -13.08245 -12.87327 -12.75424 -12.39115 -12.17280 -12.03681 -11.87715 -11.46881 -11.32831 -10.85541 -10.76581 -10.63847 -10.39711 -9.71971 -8.49145 -8.27696 -6.31472 -0.63627 -0.25189 0.16587 0.40008 1.30030 1.34237 1.41218 1.50523 2.00275 2.35025 2.47946 2.78498 3.08000 3.28941 3.79946 3.99980 4.02657 4.21401 4.25775 4.28795 4.31408 4.50576 4.56571 4.66191 4.75804 4.77532 4.82546 4.84966 4.92949 4.99769 5.12568 5.16198 5.26638 5.32385 5.53915 5.69173 5.80438 5.89758 6.37380 6.72092 7.32381 8.89026 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.007039 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.955580 B = 3976.948435 C = 4965.157829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.147 6.147 3 C -0.003 4.003 4 C -0.158 4.158 5 C -0.036 4.036 6 C -0.144 4.144 7 C -0.019 4.019 8 C -0.677 4.677 9 S 2.675 3.325 10 O -0.991 6.991 11 O -0.977 6.977 12 N -0.981 5.981 13 C 0.101 3.899 14 C 0.247 3.753 15 H 0.061 0.939 16 C -0.158 4.158 17 C -0.526 4.526 18 H 0.039 0.961 19 C 0.016 3.984 20 N -0.946 5.946 21 Si 0.934 3.066 22 H -0.253 1.253 23 H -0.301 1.301 24 H -0.237 1.237 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.160 0.840 29 H 0.176 0.824 30 H 0.170 0.830 31 H 0.147 0.853 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.656 19.575 2.976 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.101 5.899 3 C -0.119 4.119 4 C -0.183 4.183 5 C -0.056 4.056 6 C -0.166 4.166 7 C -0.040 4.040 8 C -0.774 4.774 9 S 2.770 3.230 10 O -0.981 6.981 11 O -0.967 6.967 12 N -0.820 5.820 13 C -0.044 4.044 14 C 0.142 3.858 15 H 0.078 0.922 16 C -0.217 4.217 17 C -0.566 4.566 18 H 0.057 0.943 19 C -0.182 4.182 20 N -0.586 5.586 21 Si 0.760 3.240 22 H -0.179 1.179 23 H -0.229 1.229 24 H -0.161 1.161 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.137 0.863 28 H 0.177 0.823 29 H 0.194 0.806 30 H 0.187 0.813 31 H 0.165 0.835 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.419 18.097 3.614 23.419 hybrid contribution -1.094 0.241 -0.264 1.151 sum -15.513 18.338 3.350 24.252 Atomic orbital electron populations 1.23993 0.91439 1.08750 1.07643 1.87834 1.11013 1.01798 1.89293 1.21608 0.95250 0.97650 0.97359 1.21686 0.98822 0.93468 1.04295 1.21873 0.97706 0.95390 0.90641 1.21716 0.92376 1.00999 1.01497 1.21180 1.01915 0.89866 0.91073 1.30317 1.11627 1.12771 1.22690 1.02006 0.74350 0.73410 0.73235 1.93470 1.43472 1.74502 1.86677 1.93543 1.84249 1.59446 1.59490 1.57022 1.66876 1.31691 1.26427 1.21402 0.96517 0.96898 0.89588 1.18940 0.90211 0.79815 0.96870 0.92157 1.22522 0.98453 1.00719 0.99963 1.21536 0.95927 0.93979 1.45151 0.94274 1.25753 1.02279 0.95949 0.94212 1.70036 1.37025 1.03202 1.48362 0.86080 0.80784 0.76699 0.80466 1.17884 1.22933 1.16051 0.87427 0.87291 0.86315 0.82293 0.80630 0.81284 0.83521 0.94304 0.89679 0.89925 0.94045 0.90431 0.92307 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.15 113.37 1.04 -1.68 16 2 S -0.15 -4.72 14.08 -56.49 -0.80 -5.51 16 3 C 0.00 -0.10 6.10 22.62 0.14 0.04 16 4 C -0.16 -3.00 9.36 22.41 0.21 -2.79 16 5 C -0.04 -0.51 10.04 22.25 0.22 -0.28 16 6 C -0.14 -2.37 10.04 22.30 0.22 -2.14 16 7 C -0.02 -0.48 9.54 22.25 0.21 -0.27 16 8 C -0.68 -21.42 5.94 22.41 0.13 -21.29 16 9 S 2.67 110.63 5.10 -56.49 -0.29 110.34 16 10 O -0.99 -42.72 16.35 -128.00 -2.09 -44.81 16 11 O -0.98 -46.87 14.58 -128.00 -1.87 -48.73 16 12 N -0.98 -41.82 3.06 -520.48 -1.59 -43.41 16 13 C 0.10 3.68 9.48 127.77 1.21 4.89 16 14 C 0.25 11.77 1.26 44.25 0.06 11.82 16 15 H 0.06 3.05 3.97 -2.39 -0.01 3.04 16 16 C -0.16 -6.32 8.04 71.98 0.58 -5.74 16 17 C -0.53 -30.61 8.95 25.60 0.23 -30.38 16 18 H 0.04 2.53 7.89 -2.91 -0.02 2.50 16 19 C 0.02 0.94 5.45 84.66 0.46 1.40 16 20 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 21 Si 0.93 44.35 24.37 68.60 1.67 46.02 16 22 H -0.25 -10.97 6.87 99.48 0.68 -10.29 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.24 -10.44 6.53 99.48 0.65 -9.79 16 25 H 0.11 1.44 7.75 -2.39 -0.02 1.43 16 26 H 0.11 1.44 7.75 -2.39 -0.02 1.43 16 27 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.16 2.00 5.88 -2.91 -0.02 1.99 16 29 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 30 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 31 H 0.15 3.45 7.33 -2.91 -0.02 3.43 16 32 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.08 2.93 6.44 -2.39 -0.02 2.91 16 34 H 0.08 2.36 8.08 -2.39 -0.02 2.34 16 35 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 36 H 0.08 2.61 5.93 -2.41 -0.01 2.60 16 37 H 0.06 2.25 6.66 -2.39 -0.02 2.23 16 38 H 0.27 15.77 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -80.65 317.02 1.05 -79.60 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.00 Total: 12.55 kcal Atomic # 6 Polarization: -51.12 SS G_CDS: 4.71 Total: -46.41 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -1.29 Total: -103.03 kcal Atomic # 8 Polarization: -89.59 SS G_CDS: -3.96 Total: -93.55 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.67 Total: 46.02 kcal Atomic # 16 Polarization: 105.91 SS G_CDS: -1.08 Total: 104.83 kcal Total: -80.65 1.05 -79.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187151381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.842 kcal (2) G-P(sol) polarization free energy of solvation -80.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds