Wall clock time and date at job start Tue Mar 31 2020 10:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47000 * 2 1 4 4 C 1.46499 * 120.00258 * 269.99765 * 3 2 1 5 5 C 1.50692 * 109.47149 * 270.00511 * 4 3 2 6 6 H 1.07998 * 120.00482 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99959 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00346 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00283 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47193 * 89.99863 * 9 7 5 11 11 H 1.48499 * 109.47379 * 210.00068 * 9 7 5 12 12 H 1.48497 * 109.46857 * 330.00006 * 9 7 5 13 13 C 1.34785 * 120.00008 * 90.00137 * 3 2 1 14 14 O 1.21278 * 119.99829 * 179.97438 * 13 3 2 15 15 C 1.50693 * 119.99788 * 359.97438 * 13 3 2 16 16 O 1.42909 * 109.47010 * 180.02562 * 15 13 3 17 17 C 1.35976 * 116.99758 * 179.97438 * 16 15 13 18 18 C 1.38650 * 120.05256 * 0.27612 * 17 16 15 19 19 C 1.38180 * 119.98029 * 180.27924 * 18 17 16 20 20 C 1.38370 * 120.08331 * 359.44286 * 19 18 17 21 21 Cl 1.73595 * 119.95255 * 180.30194 * 20 19 18 22 22 C 1.38361 * 120.09647 * 0.28282 * 20 19 18 23 23 C 1.38328 * 120.01933 * 359.97438 * 22 20 19 24 24 F 1.35091 * 120.04308 * 180.02562 * 23 22 20 25 25 H 1.08997 * 109.47156 * 299.99861 * 1 2 3 26 26 H 1.08995 * 109.47022 * 60.00096 * 1 2 3 27 27 H 1.09002 * 109.47072 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46926 * 239.99655 * 2 1 3 29 29 H 1.09003 * 109.46896 * 119.99572 * 2 1 3 30 30 H 1.08998 * 109.46793 * 30.00174 * 4 3 2 31 31 H 1.08999 * 109.47441 * 150.00004 * 4 3 2 32 32 H 0.96999 * 120.00787 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47492 * 60.00063 * 15 13 3 34 34 H 1.09001 * 109.47348 * 300.00065 * 15 13 3 35 35 H 1.08003 * 120.01108 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.96176 * 179.72828 * 19 18 17 37 37 H 1.07998 * 119.98744 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0958 7 6 4.1491 2.3896 -2.8779 8 7 3.3489 3.1250 -3.6185 9 14 5.9135 2.0967 -3.4169 10 1 5.9775 0.8753 -4.2591 11 1 6.3921 3.2639 -4.2003 12 1 6.7736 1.9179 -2.2196 13 6 2.2430 2.0166 1.1673 14 8 2.6477 3.1598 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3004 2.1820 3.5585 17 6 2.1261 1.6923 4.8150 18 6 1.6729 0.3948 4.9979 19 6 1.4909 -0.0994 6.2754 20 6 1.7713 0.6951 7.3729 21 17 1.5488 0.0681 8.9763 22 6 2.2291 1.9885 7.1943 23 6 2.4078 2.4893 5.9173 24 9 2.8553 3.7518 5.7424 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.5818 1.6877 -2.0283 31 1 2.0956 3.1410 -1.1384 32 1 3.6749 3.5155 -4.4444 33 1 2.6211 0.4186 2.5302 34 1 0.9432 1.0125 2.5299 35 1 1.4583 -0.2281 4.1421 36 1 1.1336 -1.1087 6.4174 37 1 2.4470 2.6073 8.0522 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193671890.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:42 Heat of formation + Delta-G solvation = -116.419965 kcal Electronic energy + Delta-G solvation = -23419.920270 eV Core-core repulsion = 19523.537430 eV Total energy + Delta-G solvation = -3896.382839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.96551 -41.53779 -40.43609 -38.74846 -37.25091 -36.98699 -34.94398 -32.00580 -31.76391 -31.29777 -30.01513 -28.26341 -25.09270 -24.37527 -23.83897 -23.42311 -20.22489 -19.77496 -18.66237 -18.43418 -18.18776 -17.63630 -17.49906 -17.12444 -16.62212 -16.36044 -16.21373 -15.66797 -15.50486 -15.00310 -14.65600 -14.41718 -14.38499 -14.11560 -14.00824 -13.61704 -13.28794 -13.23139 -13.11879 -12.82114 -12.68096 -12.56994 -12.39608 -12.18012 -11.99732 -11.93835 -11.75083 -11.68530 -10.70875 -10.65365 -10.14139 -9.53220 -9.27467 -8.24336 -6.38950 -0.08334 -0.07458 1.00951 1.35500 1.39263 1.47277 1.52547 1.65366 2.30302 2.35420 2.56999 3.05858 3.10005 3.38768 3.63724 3.76104 3.92485 3.93939 4.01200 4.19270 4.30796 4.42535 4.47390 4.64412 4.82857 4.91354 4.94471 4.99134 5.00289 5.05795 5.19575 5.34219 5.42347 5.54434 5.79563 6.03246 6.07620 6.64176 6.71717 7.23529 7.37997 8.83080 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.002803 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.283743 B = 9985.887949 C =10534.642829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.274 1.274 13 C 0.494 3.506 14 O -0.588 6.588 15 C 0.051 3.949 16 O -0.317 6.317 17 C 0.087 3.913 18 C -0.162 4.162 19 C -0.063 4.063 20 C -0.052 4.052 21 Cl -0.050 7.050 22 C -0.104 4.104 23 C 0.050 3.950 24 F -0.146 7.146 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.030 0.970 31 H -0.006 1.006 32 H 0.267 0.733 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.182 0.818 36 H 0.179 0.821 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.628 -14.546 22.000 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.026 4.026 16 O -0.230 6.230 17 C 0.040 3.960 18 C -0.181 4.181 19 C -0.081 4.081 20 C -0.079 4.079 21 Cl -0.021 7.021 22 C -0.124 4.124 23 C 0.030 3.970 24 F -0.125 7.125 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.120 0.880 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.048 0.952 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.199 0.801 36 H 0.196 0.804 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.377 -13.685 21.880 26.840 hybrid contribution 0.985 0.858 -0.761 1.512 sum -6.393 -12.826 21.119 25.522 Atomic orbital electron populations 1.22203 0.94270 1.03942 1.01855 1.21933 0.95551 0.80623 1.04809 1.48208 1.63597 1.15463 1.05432 1.18755 0.95559 0.91517 0.80098 1.21712 0.97873 1.32162 1.06503 0.92629 1.25866 1.02403 0.94435 0.96494 1.70047 1.37821 1.34160 1.14797 0.85414 0.78942 0.78251 0.78202 1.18483 1.20857 1.19862 1.20776 0.78223 0.86629 0.86257 1.90704 1.47351 1.20887 1.87869 1.22832 1.05174 0.92643 0.81972 1.86238 1.82636 1.41969 1.12196 1.19500 0.98616 0.94303 0.83578 1.21500 1.03416 0.92811 1.00325 1.21301 0.96415 1.01284 0.89099 1.20597 1.05701 0.93884 0.87765 1.98389 1.95649 1.86469 1.21610 1.20931 1.00305 0.95990 0.95125 1.17178 1.06683 0.80610 0.92551 1.91495 1.87293 1.37519 1.96188 0.91894 0.94443 0.87977 0.90369 0.87230 0.95213 0.98800 0.92384 0.85305 0.84930 0.80052 0.80394 0.81841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.24 71.98 0.74 -2.60 16 2 C 0.09 2.39 5.93 86.38 0.51 2.90 16 3 N -0.59 -23.97 2.46 -826.18 -2.03 -26.00 16 4 C 0.26 13.96 5.16 85.63 0.44 14.40 16 5 C -0.54 -31.14 9.39 25.60 0.24 -30.90 16 6 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 9 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 10 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.49 20.46 7.75 87.65 0.68 21.14 16 14 O -0.59 -32.45 16.08 16.01 0.26 -32.20 16 15 C 0.05 1.33 3.77 71.23 0.27 1.60 16 16 O -0.32 -10.35 9.54 -74.25 -0.71 -11.06 16 17 C 0.09 2.13 6.69 22.53 0.15 2.28 16 18 C -0.16 -2.34 9.04 22.35 0.20 -2.14 16 19 C -0.06 -0.73 9.82 22.29 0.22 -0.51 16 20 C -0.05 -0.78 6.32 22.33 0.14 -0.64 16 21 Cl -0.05 -0.65 28.95 -2.72 -0.08 -0.73 16 22 C -0.10 -1.94 9.80 22.32 0.22 -1.72 16 23 C 0.05 1.28 7.31 22.45 0.16 1.44 16 24 F -0.15 -4.72 17.11 44.97 0.77 -3.95 16 25 H 0.06 1.13 7.22 -2.39 -0.02 1.11 16 26 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 29 H 0.11 1.82 6.44 -2.39 -0.02 1.80 16 30 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 31 H -0.01 -0.39 7.42 -2.39 -0.02 -0.40 16 32 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.13 2.35 6.91 -2.39 -0.02 2.33 16 34 H 0.13 2.28 6.72 -2.39 -0.02 2.27 16 35 H 0.18 1.34 6.30 -2.91 -0.02 1.32 16 36 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 37 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -82.34 340.62 6.06 -76.28 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: 1.10 Total: 0.62 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 4.44 Total: 6.12 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -1.74 Total: -82.02 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.45 Total: -43.26 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.77 Total: -3.95 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -82.34 6.06 -76.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193671890.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.143 kcal (2) G-P(sol) polarization free energy of solvation -82.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds