Wall clock time and date at job start Tue Mar 31 2020 10:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.38054 * 126.34686 * 2 1 4 4 C 1.38837 * 134.14123 * 0.04642 * 3 2 1 5 5 C 1.37850 * 119.68698 * 179.97438 * 4 3 2 6 6 C 1.38776 * 120.45592 * 359.75784 * 5 4 3 7 7 C 1.36606 * 120.66551 * 0.50822 * 6 5 4 8 8 C 1.39746 * 119.88512 * 359.47204 * 7 6 5 9 9 N 1.35776 * 133.60044 * 180.25155 * 8 7 6 10 10 C 1.30115 * 109.64449 * 180.02562 * 9 8 7 11 11 C 1.50698 * 124.94995 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47095 * 180.02562 * 11 10 9 13 13 C 1.47206 * 109.47294 * 60.02392 * 11 10 9 14 14 N 4.47082 * 105.69479 * 150.39168 * 2 1 3 15 15 C 1.50701 * 109.47283 * 300.02702 * 11 10 9 16 16 O 1.20756 * 120.00211 * 29.99704 * 15 11 10 17 17 C 1.50701 * 120.00249 * 210.00354 * 15 11 10 18 18 S 1.80994 * 109.47345 * 179.97438 * 17 15 11 19 19 C 1.76202 * 100.00039 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99930 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00155 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00199 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99976 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.46975 * 90.00273 * 23 21 19 25 25 H 1.48502 * 109.47245 * 210.00374 * 23 21 19 26 26 H 1.48495 * 109.46978 * 330.00545 * 23 21 19 27 27 H 1.08992 * 109.47010 * 89.97140 * 1 2 3 28 28 H 1.09005 * 109.46309 * 209.97230 * 1 2 3 29 29 H 1.08996 * 109.46915 * 329.96608 * 1 2 3 30 30 H 1.07998 * 120.15890 * 0.02562 * 4 3 2 31 31 H 1.08009 * 119.77444 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.67312 * 180.28130 * 6 5 4 33 33 H 1.08002 * 120.06139 * 179.75885 * 7 6 5 34 34 H 1.09006 * 109.46823 * 300.00236 * 17 15 11 35 35 H 1.09007 * 109.47084 * 59.99342 * 17 15 11 36 36 H 0.96999 * 120.00144 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2833 1.1119 0.0000 4 6 2.0539 2.4812 0.0008 5 6 3.1221 3.3525 0.0011 6 6 4.4233 2.8700 0.0056 7 6 4.6681 1.5260 -0.0006 8 6 3.6008 0.6239 -0.0004 9 7 3.5205 -0.7315 -0.0011 10 6 2.2713 -1.0956 -0.0010 11 6 1.7882 -2.5231 -0.0023 12 1 0.6983 -2.5377 -0.0024 13 6 2.2881 -3.2114 1.1991 14 7 2.6745 -3.7421 2.1265 15 6 2.3001 -3.2256 -1.2333 16 8 3.3509 -2.8919 -1.7260 17 6 1.5008 -4.3447 -1.8496 18 16 2.3724 -4.9792 -3.3034 19 6 1.2483 -6.2385 -3.8086 20 1 0.3414 -6.4097 -3.2476 21 6 1.5288 -7.0113 -4.9269 22 7 0.6888 -7.9518 -5.3046 23 14 3.0977 -6.7158 -5.8968 24 1 4.1868 -7.5619 -5.3462 25 1 2.8717 -7.0655 -7.3223 26 1 3.4817 -5.2851 -5.7930 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3632 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 1.0432 2.8620 0.0021 31 1 2.9453 4.4180 0.0021 32 1 5.2509 3.5639 0.0103 33 1 5.6846 1.1613 -0.0009 34 1 1.3765 -5.1462 -1.1214 35 1 0.5216 -3.9701 -2.1481 36 1 0.8851 -8.4921 -6.0859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194083811.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:27 Heat of formation + Delta-G solvation = 78.502363 kcal Electronic energy + Delta-G solvation = -22306.670829 eV Core-core repulsion = 18883.846138 eV Total energy + Delta-G solvation = -3422.824691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.55668 -39.61390 -37.65369 -36.68365 -34.54553 -32.75616 -32.51115 -30.73812 -29.95671 -28.16530 -27.29307 -25.70152 -22.90196 -22.43797 -21.04550 -20.71721 -18.15514 -17.99944 -17.39627 -17.30804 -16.47478 -15.96483 -15.69368 -15.09101 -14.78293 -14.60729 -14.34884 -14.33258 -13.98737 -13.83342 -13.59115 -13.21513 -13.13662 -12.94295 -12.78005 -12.27789 -12.19699 -12.14270 -11.84645 -11.70008 -11.33789 -11.06931 -10.77720 -10.62150 -10.11669 -9.91542 -9.72887 -9.07668 -8.65372 -8.57667 -8.32799 -7.05319 -6.36083 -4.10383 0.63633 1.28434 1.71010 1.99209 2.24631 2.53387 2.65809 2.77296 3.28358 3.39118 3.44617 3.53723 3.62719 3.71006 3.92629 4.12335 4.26371 4.29734 4.44156 4.67487 4.70283 4.75111 4.79417 5.02923 5.03135 5.09917 5.19149 5.28228 5.30639 5.50732 5.55968 5.85050 5.85279 6.14300 6.27771 6.29944 6.62658 6.72950 7.18748 7.41357 7.63627 7.86755 8.34256 9.09608 10.72867 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.003249 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.991948 B = 8616.657931 C = 9054.387925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.485 5.485 3 C 0.055 3.945 4 C -0.112 4.112 5 C -0.098 4.098 6 C -0.132 4.132 7 C -0.055 4.055 8 C 0.045 3.955 9 N -0.445 5.445 10 C 0.277 3.723 11 C 0.051 3.949 12 H 0.155 0.845 13 C 0.221 3.779 14 N -0.385 5.385 15 C 0.375 3.625 16 O -0.375 6.375 17 C -0.148 4.148 18 S -0.153 6.153 19 C -0.520 4.520 20 H 0.091 0.909 21 C 0.097 3.903 22 N -0.878 5.878 23 Si 0.855 3.145 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.235 1.235 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 22.339 11.600 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.175 5.175 3 C -0.054 4.054 4 C -0.133 4.133 5 C -0.118 4.118 6 C -0.153 4.153 7 C -0.074 4.074 8 C -0.074 4.074 9 N -0.162 5.162 10 C 0.011 3.989 11 C 0.025 3.975 12 H 0.172 0.828 13 C -0.099 4.099 14 N -0.061 5.061 15 C 0.240 3.760 16 O -0.240 6.240 17 C -0.296 4.296 18 S 0.075 5.925 19 C -0.667 4.667 20 H 0.109 0.891 21 C -0.112 4.112 22 N -0.514 5.514 23 Si 0.680 3.320 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.159 1.159 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.320 21.350 12.117 24.550 hybrid contribution -1.754 0.155 -0.356 1.796 sum -1.433 21.504 11.761 24.552 Atomic orbital electron populations 1.22145 0.75740 1.05035 1.04354 1.45020 1.07215 1.04578 1.60697 1.18853 0.91065 0.89210 1.06244 1.19918 0.99777 0.88502 1.05061 1.20902 0.91968 0.99246 0.99694 1.20657 0.97089 0.94756 1.02769 1.20098 0.97664 0.91522 0.98127 1.19093 0.92397 0.89892 1.06032 1.70469 1.16497 1.10906 1.18363 1.22044 0.85962 0.88289 1.02652 1.17633 1.03340 0.86258 0.90255 0.82812 1.27426 0.94463 0.94460 0.93559 1.81244 1.06898 1.07502 1.10427 1.23599 0.86678 0.83115 0.82582 1.90534 1.19549 1.57356 1.56578 1.23760 1.03535 0.99142 1.03176 1.84849 1.33365 1.45388 1.28918 1.22221 1.08658 1.19023 1.16799 0.89086 1.24710 0.96852 0.93611 0.96039 1.69926 1.35923 1.19893 1.25641 0.86761 0.83497 0.81779 0.79986 1.19126 1.19826 1.15947 0.89769 0.89034 0.89230 0.85935 0.85226 0.85266 0.85123 0.87301 0.87088 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 10.81 59.85 0.65 1.01 16 2 N -0.48 -5.06 3.21 -118.50 -0.38 -5.44 16 3 C 0.06 0.65 6.87 -83.99 -0.58 0.07 16 4 C -0.11 -0.99 10.05 -39.50 -0.40 -1.38 16 5 C -0.10 -0.78 10.03 -39.52 -0.40 -1.18 16 6 C -0.13 -1.17 9.96 -39.97 -0.40 -1.57 16 7 C -0.05 -0.64 10.05 -39.61 -0.40 -1.04 16 8 C 0.04 0.64 7.23 -84.70 -0.61 0.02 16 9 N -0.44 -7.19 10.47 -8.24 -0.09 -7.27 16 10 C 0.28 3.66 6.11 -154.83 -0.95 2.71 16 11 C 0.05 0.59 2.83 -95.71 -0.27 0.32 16 12 H 0.15 0.95 6.64 -51.93 -0.34 0.60 16 13 C 0.22 3.02 14.60 -20.75 -0.30 2.72 16 14 N -0.39 -6.07 18.54 42.17 0.78 -5.29 16 15 C 0.38 5.86 6.18 -29.03 -0.18 5.68 16 16 O -0.38 -7.37 15.27 6.00 0.09 -7.28 16 17 C -0.15 -2.49 6.08 36.01 0.22 -2.27 16 18 S -0.15 -3.62 18.55 -107.50 -1.99 -5.62 16 19 C -0.52 -14.25 10.04 30.94 0.31 -13.94 16 20 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 21 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 22 N -0.88 -25.75 13.97 55.49 0.78 -24.98 16 23 Si 0.86 21.17 27.74 -169.99 -4.72 16.46 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.27 7.01 -51.93 -0.36 -0.09 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 31 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 32 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.11 1.71 8.14 -51.91 -0.42 1.29 16 35 H 0.11 1.57 8.14 -51.91 -0.42 1.15 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -36.80 339.82 -7.47 -44.27 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -3.67 Total: -3.77 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -3.40 Total: -6.20 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 1.09 Total: -42.98 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.09 Total: -7.28 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.72 Total: 16.46 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.80 -7.47 -44.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194083811.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.773 kcal (2) G-P(sol) polarization free energy of solvation -36.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds