Wall clock time and date at job start Tue Mar 31 2020 10:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.38054 * 126.34686 * 2 1 4 4 C 1.38837 * 134.14123 * 0.04642 * 3 2 1 5 5 C 1.37850 * 119.68698 * 179.97438 * 4 3 2 6 6 C 1.38776 * 120.45592 * 359.75784 * 5 4 3 7 7 C 1.36606 * 120.66551 * 0.50822 * 6 5 4 8 8 C 1.39746 * 119.88512 * 359.47204 * 7 6 5 9 9 N 1.35776 * 133.60044 * 180.25155 * 8 7 6 10 10 C 1.30115 * 109.64449 * 180.02562 * 9 8 7 11 11 C 1.50698 * 124.94995 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47095 * 180.02562 * 11 10 9 13 13 C 1.47206 * 109.47294 * 60.02392 * 11 10 9 14 14 N 4.47082 * 105.69479 * 150.39168 * 2 1 3 15 15 C 1.50701 * 109.47283 * 300.02702 * 11 10 9 16 16 O 1.20756 * 120.00211 * 29.99704 * 15 11 10 17 17 C 1.50701 * 120.00249 * 210.00354 * 15 11 10 18 18 S 1.80994 * 109.47345 * 179.97438 * 17 15 11 19 19 C 1.76202 * 100.00039 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99930 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00155 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00199 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99976 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.46975 * 90.00273 * 23 21 19 25 25 H 1.48502 * 109.47245 * 210.00374 * 23 21 19 26 26 H 1.48495 * 109.46978 * 330.00545 * 23 21 19 27 27 H 1.08992 * 109.47010 * 89.97140 * 1 2 3 28 28 H 1.09005 * 109.46309 * 209.97230 * 1 2 3 29 29 H 1.08996 * 109.46915 * 329.96608 * 1 2 3 30 30 H 1.07998 * 120.15890 * 0.02562 * 4 3 2 31 31 H 1.08009 * 119.77444 * 180.02562 * 5 4 3 32 32 H 1.08003 * 119.67312 * 180.28130 * 6 5 4 33 33 H 1.08002 * 120.06139 * 179.75885 * 7 6 5 34 34 H 1.09006 * 109.46823 * 300.00236 * 17 15 11 35 35 H 1.09007 * 109.47084 * 59.99342 * 17 15 11 36 36 H 0.96999 * 120.00144 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2833 1.1119 0.0000 4 6 2.0539 2.4812 0.0008 5 6 3.1221 3.3525 0.0011 6 6 4.4233 2.8700 0.0056 7 6 4.6681 1.5260 -0.0006 8 6 3.6008 0.6239 -0.0004 9 7 3.5205 -0.7315 -0.0011 10 6 2.2713 -1.0956 -0.0010 11 6 1.7882 -2.5231 -0.0023 12 1 0.6983 -2.5377 -0.0024 13 6 2.2881 -3.2114 1.1991 14 7 2.6745 -3.7421 2.1265 15 6 2.3001 -3.2256 -1.2333 16 8 3.3509 -2.8919 -1.7260 17 6 1.5008 -4.3447 -1.8496 18 16 2.3724 -4.9792 -3.3034 19 6 1.2483 -6.2385 -3.8086 20 1 0.3414 -6.4097 -3.2476 21 6 1.5288 -7.0113 -4.9269 22 7 0.6888 -7.9518 -5.3046 23 14 3.0977 -6.7158 -5.8968 24 1 4.1868 -7.5619 -5.3462 25 1 2.8717 -7.0655 -7.3223 26 1 3.4817 -5.2851 -5.7930 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3632 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 1.0432 2.8620 0.0021 31 1 2.9453 4.4180 0.0021 32 1 5.2509 3.5639 0.0103 33 1 5.6846 1.1613 -0.0009 34 1 1.3765 -5.1462 -1.1214 35 1 0.5216 -3.9701 -2.1481 36 1 0.8851 -8.4921 -6.0859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194083811.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:27 Heat of formation + Delta-G solvation = 54.693236 kcal Electronic energy + Delta-G solvation = -22307.703270 eV Core-core repulsion = 18883.846138 eV Total energy + Delta-G solvation = -3423.857132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.36581 -40.86700 -38.46028 -37.78347 -35.27734 -34.66145 -33.82692 -31.44880 -31.13189 -29.09644 -27.85002 -27.81212 -23.74169 -23.19910 -22.24429 -21.56781 -19.86967 -19.06516 -18.44364 -18.05395 -17.47414 -17.15728 -16.82390 -16.66672 -16.02329 -15.96233 -15.35334 -15.23159 -14.98577 -14.89039 -14.83783 -14.32105 -14.12282 -14.03901 -13.72087 -13.58323 -13.33469 -13.08789 -13.03093 -12.84896 -12.71685 -12.53520 -12.39742 -11.86696 -11.35308 -11.17090 -11.09079 -10.91928 -10.54060 -9.35945 -9.08406 -9.01529 -8.50770 -6.21732 -0.14705 0.48957 0.55448 0.93683 1.11120 1.29034 1.31361 1.47873 1.60371 1.67014 1.73724 2.23907 2.47226 2.62522 2.79426 2.84210 2.88193 2.94928 3.36208 3.71437 3.85148 4.00601 4.08504 4.14532 4.26290 4.42654 4.47677 4.50063 4.53253 4.68319 4.76824 4.85836 5.18836 5.41506 5.55635 5.58663 5.72531 5.95628 5.99948 6.14031 6.14678 6.18938 6.78827 6.95312 8.61139 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.003249 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.991948 B = 8616.657931 C = 9054.387925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.475 5.475 3 C 0.044 3.956 4 C -0.110 4.110 5 C -0.094 4.094 6 C -0.124 4.124 7 C -0.088 4.088 8 C 0.001 3.999 9 N -0.500 5.500 10 C 0.262 3.738 11 C 0.067 3.933 12 H 0.217 0.783 13 C 0.240 3.760 14 N -0.426 5.426 15 C 0.386 3.614 16 O -0.421 6.421 17 C -0.136 4.136 18 S -0.199 6.199 19 C -0.519 4.519 20 H 0.072 0.928 21 C 0.047 3.953 22 N -0.916 5.916 23 Si 0.908 3.092 24 H -0.268 1.268 25 H -0.261 1.261 26 H -0.236 1.236 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.156 0.844 31 H 0.168 0.832 32 H 0.156 0.844 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.148 0.852 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 25.157 12.239 28.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.164 5.164 3 C -0.066 4.066 4 C -0.131 4.131 5 C -0.113 4.113 6 C -0.144 4.144 7 C -0.108 4.108 8 C -0.118 4.118 9 N -0.220 5.220 10 C -0.005 4.005 11 C 0.042 3.958 12 H 0.233 0.767 13 C -0.080 4.080 14 N -0.101 5.101 15 C 0.254 3.746 16 O -0.289 6.289 17 C -0.283 4.283 18 S 0.029 5.971 19 C -0.666 4.666 20 H 0.090 0.910 21 C -0.158 4.158 22 N -0.554 5.554 23 Si 0.730 3.270 24 H -0.193 1.193 25 H -0.185 1.185 26 H -0.160 1.160 27 H 0.115 0.885 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.174 0.826 31 H 0.185 0.815 32 H 0.173 0.827 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.529 24.172 12.765 27.379 hybrid contribution -1.231 -0.562 -0.445 1.424 sum -2.760 23.610 12.321 26.774 Atomic orbital electron populations 1.22654 0.72555 1.07518 1.05949 1.45220 1.08825 1.03234 1.59155 1.19210 0.90342 0.90565 1.06448 1.20381 1.01763 0.87216 1.03704 1.21406 0.91115 1.01072 0.97710 1.21032 0.98827 0.93815 1.00721 1.20299 0.97151 0.92868 1.00447 1.19538 0.94518 0.89724 1.08013 1.70345 1.18844 1.12588 1.20213 1.22048 0.85974 0.89189 1.03321 1.17680 1.06488 0.84833 0.86814 0.76657 1.27705 0.93330 0.93506 0.93440 1.81261 1.08175 1.08817 1.11890 1.23753 0.85474 0.82142 0.83224 1.90546 1.21405 1.58566 1.58338 1.23889 1.04357 1.00035 1.00067 1.84858 1.34385 1.44582 1.33270 1.22383 1.08417 1.19617 1.16222 0.91019 1.25492 0.99447 0.93652 0.97230 1.70001 1.37658 1.21095 1.26609 0.85961 0.80180 0.81513 0.79314 1.19268 1.18508 1.15979 0.88509 0.86430 0.87124 0.82610 0.81486 0.82673 0.86107 0.85638 0.83416 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.32 10.81 127.77 1.38 1.70 16 2 N -0.47 -8.73 3.21 -528.83 -1.70 -10.43 16 3 C 0.04 0.96 6.87 38.86 0.27 1.23 16 4 C -0.11 -1.58 10.05 22.32 0.22 -1.36 16 5 C -0.09 -1.17 10.03 22.31 0.22 -0.95 16 6 C -0.12 -1.99 9.96 22.02 0.22 -1.77 16 7 C -0.09 -2.13 10.05 22.25 0.22 -1.90 16 8 C 0.00 0.02 7.23 39.45 0.29 0.31 16 9 N -0.50 -16.59 10.47 -179.97 -1.88 -18.47 16 10 C 0.26 6.59 6.11 137.92 0.84 7.43 16 11 C 0.07 1.39 2.83 -14.09 -0.04 1.35 16 12 H 0.22 1.57 6.64 -2.39 -0.02 1.55 16 13 C 0.24 6.24 14.60 89.44 1.31 7.54 16 14 N -0.43 -13.21 18.54 20.01 0.37 -12.84 16 15 C 0.39 11.49 6.18 29.10 0.18 11.67 16 16 O -0.42 -16.64 15.27 -1.44 -0.02 -16.66 16 17 C -0.14 -4.27 6.08 71.24 0.43 -3.83 16 18 S -0.20 -9.35 18.55 -56.49 -1.05 -10.40 16 19 C -0.52 -28.51 10.04 67.95 0.68 -27.82 16 20 H 0.07 4.09 8.03 -2.91 -0.02 4.06 16 21 C 0.05 2.69 5.50 84.86 0.47 3.15 16 22 N -0.92 -54.25 13.97 21.65 0.30 -53.95 16 23 Si 0.91 44.02 27.74 68.60 1.90 45.92 16 24 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.24 -11.36 6.74 99.48 0.67 -10.69 16 27 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.12 0.08 7.01 -2.38 -0.02 0.06 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 32 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.13 3.64 8.14 -2.39 -0.02 3.62 16 35 H 0.15 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -85.63 339.82 5.71 -79.92 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: 1.09 Total: 0.16 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 6.70 Total: -3.26 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -2.91 Total: -95.69 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.02 Total: -16.66 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.90 Total: 45.92 kcal Atomic # 16 Polarization: -9.35 SS G_CDS: -1.05 Total: -10.40 kcal Total: -85.63 5.71 -79.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194083811.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.613 kcal (2) G-P(sol) polarization free energy of solvation -85.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds