Wall clock time and date at job start Tue Mar 31 2020 10:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31507 * 120.00188 * 164.58940 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2 16 16 C 1.52992 * 109.47648 * 179.97438 * 15 13 12 17 17 O 1.42899 * 109.47579 * 179.97438 * 16 15 13 18 18 C 1.35974 * 117.00040 * 179.97438 * 17 16 15 19 19 C 1.38686 * 120.03456 * 359.72830 * 18 17 16 20 20 C 1.38156 * 119.98137 * 179.74278 * 19 18 17 21 21 C 1.38469 * 120.05123 * 0.55524 * 20 19 18 22 22 F 1.35094 * 119.96820 * 179.72381 * 21 20 19 23 23 C 1.38436 * 120.06514 * 359.69986 * 21 20 19 24 24 C 1.38263 * 120.02098 * 0.02562 * 23 21 20 25 25 Cl 1.73596 * 120.02466 * 179.97438 * 24 23 21 26 26 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 27 27 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 28 28 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 29 29 H 0.97004 * 120.00365 * 355.18112 * 7 6 4 30 30 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 31 31 H 1.09001 * 109.47433 * 300.00072 * 15 13 12 32 32 H 1.09001 * 109.47090 * 59.99525 * 15 13 12 33 33 H 1.09001 * 109.46954 * 300.00600 * 16 15 13 34 34 H 1.09001 * 109.47071 * 59.99748 * 16 15 13 35 35 H 1.08001 * 120.00631 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.97803 * 180.27769 * 20 19 18 37 37 H 1.07999 * 119.98822 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9543 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8593 1.1586 -2.4114 15 6 2.6500 -0.7285 -3.5874 16 6 2.7009 0.2543 -4.7588 17 8 3.1783 -0.4191 -5.9253 18 6 3.2837 0.3174 -7.0635 19 6 2.9293 1.6582 -7.0580 20 6 3.0419 2.4067 -8.2138 21 6 3.4973 1.8164 -9.3807 22 9 3.6013 2.5486 -10.5112 23 6 3.8465 0.4769 -9.3897 24 6 3.7404 -0.2735 -8.2333 25 17 4.1777 -1.9535 -8.2447 26 1 -0.3633 -1.0211 -0.1156 27 1 -0.3633 0.4106 0.9420 28 1 -0.3632 0.6107 -0.8266 29 1 2.1697 -1.8615 3.4635 30 1 2.2490 -1.6319 -1.1526 31 1 3.6493 -1.1205 -3.3979 32 1 1.9778 -1.5508 -3.8325 33 1 1.7015 0.6459 -4.9482 34 1 3.3729 1.0768 -4.5140 35 1 2.5699 2.1182 -6.1494 36 1 2.7702 3.4520 -8.2084 37 1 4.2019 0.0179 -10.3004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194640112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:46 Heat of formation + Delta-G solvation = -129.498904 kcal Electronic energy + Delta-G solvation = -22721.540358 eV Core-core repulsion = 18824.590374 eV Total energy + Delta-G solvation = -3896.949985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.94209 -41.39316 -40.60895 -38.55525 -37.43524 -36.86816 -34.47985 -33.32934 -32.16199 -31.36962 -30.13462 -26.90745 -25.99677 -24.07268 -23.34348 -22.28656 -21.21812 -19.91989 -19.48003 -18.63496 -17.99511 -17.57322 -17.52706 -17.01842 -16.66323 -16.00603 -15.92702 -15.64454 -15.53294 -15.08517 -14.73099 -14.62830 -14.52822 -14.36177 -14.14044 -13.80115 -13.53547 -13.34283 -13.10477 -12.82248 -12.46985 -12.36213 -12.15704 -12.05165 -11.96642 -11.74819 -11.51235 -11.10732 -10.87903 -10.56293 -10.16415 -9.91220 -9.23780 -8.79093 -6.45041 -0.15351 -0.02908 0.98928 1.49840 1.50497 1.68995 1.70708 1.72424 2.28405 2.44691 2.67956 3.01750 3.17220 3.51218 3.62397 3.79676 3.93519 3.93755 4.00525 4.17559 4.40694 4.46155 4.53671 4.70846 4.71777 4.74975 4.76332 4.80639 4.95741 4.96111 5.10067 5.44691 5.48190 5.61477 5.65630 6.01233 6.08703 6.51873 6.80362 7.27538 7.39577 8.59714 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025736 B = 0.002407 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.726691 B =11629.139918 C =12474.265302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.243 3.757 3 H 0.027 0.973 4 C -0.612 4.612 5 H 0.040 0.960 6 C -0.007 4.007 7 N -0.931 5.931 8 Si 1.074 2.926 9 H -0.277 1.277 10 H -0.246 1.246 11 H -0.281 1.281 12 N -0.703 5.703 13 C 0.509 3.491 14 O -0.592 6.592 15 C -0.128 4.128 16 C 0.078 3.922 17 O -0.308 6.308 18 C 0.124 3.876 19 C -0.170 4.170 20 C -0.100 4.100 21 C 0.063 3.937 22 F -0.138 7.138 23 C -0.105 4.105 24 C -0.058 4.058 25 Cl -0.047 7.047 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.259 0.741 30 H 0.406 0.594 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.434 2.393 -27.163 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.138 3.862 3 H 0.045 0.955 4 C -0.650 4.650 5 H 0.059 0.941 6 C -0.207 4.207 7 N -0.565 5.565 8 Si 0.895 3.105 9 H -0.203 1.203 10 H -0.170 1.170 11 H -0.207 1.207 12 N -0.351 5.351 13 C 0.296 3.704 14 O -0.474 6.474 15 C -0.168 4.168 16 C 0.002 3.998 17 O -0.221 6.221 18 C 0.077 3.923 19 C -0.189 4.189 20 C -0.119 4.119 21 C 0.043 3.957 22 F -0.117 7.117 23 C -0.125 4.125 24 C -0.085 4.085 25 Cl -0.018 7.018 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.241 0.759 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.956 4.027 -26.064 26.446 hybrid contribution 0.669 -1.898 -0.685 2.126 sum 2.625 2.129 -26.749 26.962 Atomic orbital electron populations 1.22343 0.97594 1.00682 1.00193 1.18790 0.91442 0.93225 0.82740 0.95517 1.22276 1.39989 1.10307 0.92471 0.94130 1.26869 0.93820 1.08330 0.91719 1.70927 1.45879 1.08002 1.31734 0.83731 0.77842 0.71628 0.77252 1.20315 1.16963 1.20707 1.46119 1.65138 1.14442 1.09415 1.20829 0.77385 0.86972 0.85216 1.90648 1.53110 1.17673 1.85926 1.21384 1.05896 0.99618 0.89909 1.22484 1.00449 0.94848 0.81969 1.86063 1.80907 1.38443 1.16711 1.18864 0.96510 0.90790 0.86151 1.21356 1.04649 0.92058 1.00856 1.21323 0.97917 1.02334 0.90283 1.17424 1.05400 0.89511 0.83361 1.91513 1.94279 1.76774 1.49122 1.20969 1.00789 0.92289 0.98410 1.19940 1.07979 0.87733 0.92868 1.98386 1.91357 1.13362 1.98712 0.92928 0.92977 0.94051 0.93210 0.75900 0.86214 0.85759 0.90533 0.90847 0.82273 0.81584 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.25 8.76 71.98 0.63 -5.62 16 2 C 0.24 10.96 2.11 44.25 0.09 11.06 16 3 H 0.03 1.31 6.21 -2.39 -0.01 1.30 16 4 C -0.61 -32.26 9.02 25.60 0.23 -32.02 16 5 H 0.04 2.26 7.96 -2.91 -0.02 2.24 16 6 C -0.01 -0.38 5.33 84.65 0.45 0.07 16 7 N -0.93 -55.41 13.69 21.44 0.29 -55.12 16 8 Si 1.07 48.75 26.17 68.60 1.80 50.55 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.25 -10.22 5.53 99.48 0.55 -9.67 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 N -0.70 -25.53 5.07 -446.10 -2.26 -27.79 16 13 C 0.51 16.52 7.79 87.66 0.68 17.21 16 14 O -0.59 -23.26 15.64 -3.03 -0.05 -23.31 16 15 C -0.13 -2.78 6.07 29.84 0.18 -2.60 16 16 C 0.08 1.62 4.03 71.98 0.29 1.91 16 17 O -0.31 -6.47 9.60 -93.26 -0.89 -7.36 16 18 C 0.12 2.42 6.68 22.51 0.15 2.57 16 19 C -0.17 -2.82 9.04 22.36 0.20 -2.62 16 20 C -0.10 -1.45 10.02 22.31 0.22 -1.22 16 21 C 0.06 1.00 7.30 22.37 0.16 1.16 16 22 F -0.14 -2.34 17.26 44.97 0.78 -1.57 16 23 C -0.11 -1.64 9.80 22.32 0.22 -1.43 16 24 C -0.06 -1.07 6.33 22.41 0.14 -0.93 16 25 Cl -0.05 -0.88 28.50 -2.72 -0.08 -0.96 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.05 2.21 5.06 -2.39 -0.01 2.20 16 28 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.26 15.43 8.73 -92.71 -0.81 14.62 16 30 H 0.41 12.93 8.53 -92.71 -0.79 12.14 16 31 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 1.58 7.61 -2.39 -0.02 1.57 16 34 H 0.07 1.57 7.63 -2.39 -0.02 1.55 16 35 H 0.16 2.39 6.30 -2.91 -0.02 2.37 16 36 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -64.93 334.67 3.38 -61.55 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.14 Total: 16.46 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 3.66 Total: -12.46 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -1.97 Total: -82.91 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.94 Total: -30.67 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.78 Total: -1.57 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 1.80 Total: 50.55 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -64.93 3.38 -61.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194640112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.951 kcal (2) G-P(sol) polarization free energy of solvation -64.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds