Wall clock time and date at job start Tue Mar 31 2020 10:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 O 1.42905 * 109.46871 * 179.97438 * 16 15 13 18 18 C 1.35968 * 116.99961 * 179.97438 * 17 16 15 19 19 C 1.38677 * 120.03420 * 359.72487 * 18 17 16 20 20 C 1.38157 * 119.98083 * 179.74355 * 19 18 17 21 21 C 1.38472 * 120.05382 * 0.55571 * 20 19 18 22 22 F 1.35092 * 119.96896 * 179.71820 * 21 20 19 23 23 C 1.38434 * 120.06521 * 359.70140 * 21 20 19 24 24 C 1.38268 * 120.01775 * 0.02562 * 23 21 20 25 25 Cl 1.73594 * 120.02729 * 179.97438 * 24 23 21 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 31 31 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 32 32 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 33 33 H 1.09000 * 109.47282 * 299.99596 * 16 15 13 34 34 H 1.09000 * 109.47246 * 59.99983 * 16 15 13 35 35 H 1.08000 * 120.01469 * 0.02742 * 19 18 17 36 36 H 1.08005 * 119.97628 * 180.27873 * 20 19 18 37 37 H 1.08001 * 119.99780 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 8 3.1769 -0.4189 5.9257 18 6 3.2829 0.3177 7.0636 19 6 2.9412 1.6617 7.0548 20 6 3.0443 2.4079 8.2130 21 6 3.4997 1.8177 9.3799 22 9 3.6053 2.5504 10.5100 23 6 3.8465 0.4776 9.3898 24 6 3.7390 -0.2733 8.2337 25 17 4.1745 -1.9536 8.2457 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4845 30 1 2.2490 -1.6316 1.1527 31 1 1.9776 -1.5506 3.8326 32 1 3.6492 -1.1202 3.3980 33 1 3.3726 1.0773 4.5141 34 1 1.7011 0.6461 4.9483 35 1 2.5901 2.1239 6.1441 36 1 2.7738 3.4535 8.2071 37 1 4.2012 0.0183 10.3007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194640125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:48 Heat of formation + Delta-G solvation = -128.909134 kcal Electronic energy + Delta-G solvation = -22640.856172 eV Core-core repulsion = 18743.931762 eV Total energy + Delta-G solvation = -3896.924410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.93677 -41.37160 -40.52083 -38.53592 -37.42285 -36.74526 -34.34221 -33.20988 -32.14069 -30.89049 -30.02520 -27.33787 -25.99599 -24.08080 -23.37907 -22.45687 -21.10992 -19.73003 -18.80819 -18.49326 -17.97797 -17.50708 -17.26172 -17.10524 -16.65738 -16.07409 -15.92980 -15.78965 -15.60873 -15.03597 -14.72647 -14.48248 -14.41454 -14.26141 -13.79868 -13.69245 -13.25842 -13.00972 -12.82672 -12.80956 -12.68313 -12.34732 -12.25605 -12.16720 -12.12885 -11.95338 -11.73480 -11.10946 -10.80001 -10.57283 -10.15658 -9.75682 -9.22880 -8.17306 -6.34559 -0.14730 -0.02168 0.99806 1.46034 1.47541 1.55262 1.73621 1.78584 2.29026 2.39237 2.80977 3.13412 3.17782 3.52477 3.64531 3.81896 3.94366 3.96014 4.06088 4.19592 4.43903 4.49295 4.74964 4.76258 4.76791 4.77642 4.93583 4.96343 4.97354 5.10745 5.44338 5.48886 5.61195 5.69889 5.90363 6.09423 6.10929 6.73394 6.94005 7.32745 7.53653 8.88630 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.002263 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.950653 B =12369.633350 C =13097.769986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.001 0.999 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.971 3.029 9 H -0.288 1.288 10 H -0.271 1.271 11 H -0.264 1.264 12 N -0.704 5.704 13 C 0.504 3.496 14 O -0.600 6.600 15 C -0.126 4.126 16 C 0.078 3.922 17 O -0.306 6.306 18 C 0.124 3.876 19 C -0.172 4.172 20 C -0.100 4.100 21 C 0.063 3.937 22 F -0.138 7.138 23 C -0.104 4.104 24 C -0.057 4.057 25 Cl -0.045 7.045 26 H 0.040 0.960 27 H 0.014 0.986 28 H 0.065 0.935 29 H 0.265 0.735 30 H 0.408 0.592 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.157 0.843 36 H 0.165 0.835 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.678 -3.498 22.960 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.019 0.981 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.213 1.213 10 H -0.196 1.196 11 H -0.189 1.189 12 N -0.352 5.352 13 C 0.292 3.708 14 O -0.482 6.482 15 C -0.165 4.165 16 C 0.003 3.997 17 O -0.219 6.219 18 C 0.077 3.923 19 C -0.191 4.191 20 C -0.119 4.119 21 C 0.043 3.957 22 F -0.117 7.117 23 C -0.124 4.124 24 C -0.084 4.084 25 Cl -0.016 7.016 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.243 0.757 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.174 0.826 36 H 0.183 0.817 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.471 -2.901 22.828 23.653 hybrid contribution 0.146 -0.251 -0.930 0.974 sum 5.617 -3.151 21.898 22.825 Atomic orbital electron populations 1.21907 0.98297 0.99504 0.99665 1.18342 0.91122 0.91996 0.81900 0.98149 1.21537 1.32606 1.13620 0.90831 0.90778 1.25792 0.94897 0.95589 1.02328 1.70042 1.36945 1.23925 1.24655 0.85413 0.78652 0.78716 0.77655 1.21319 1.19583 1.18906 1.46257 1.64903 1.14436 1.09641 1.20902 0.77533 0.86941 0.85472 1.90655 1.53336 1.18212 1.86014 1.21384 1.06026 0.99453 0.89682 1.22470 1.00216 0.94948 0.82092 1.86059 1.80893 1.38330 1.16647 1.18867 0.96501 0.90700 0.86236 1.21344 1.04846 0.92134 1.00753 1.21313 0.97974 1.02333 0.90293 1.17410 1.05387 0.89543 0.83333 1.91512 1.94260 1.76756 1.49137 1.20973 1.00756 0.92204 0.98426 1.19931 1.07914 0.87781 0.92811 1.98384 1.91366 1.13189 1.98708 0.94086 0.96661 0.91606 0.92565 0.75707 0.85668 0.85864 0.91052 0.90921 0.82554 0.81697 0.81367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.62 9.26 71.98 0.67 -5.95 16 2 C 0.27 13.47 2.56 44.24 0.11 13.58 16 3 H 0.00 0.04 7.58 -2.38 -0.02 0.02 16 4 C -0.55 -28.14 8.73 25.60 0.22 -27.91 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -51.73 11.32 21.45 0.24 -51.49 16 8 Si 0.97 41.12 29.54 68.60 2.03 43.15 16 9 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 12 N -0.70 -27.03 5.07 -446.09 -2.26 -29.29 16 13 C 0.50 17.92 7.79 87.66 0.68 18.60 16 14 O -0.60 -26.56 15.65 -3.04 -0.05 -26.60 16 15 C -0.13 -2.92 6.07 29.85 0.18 -2.74 16 16 C 0.08 1.79 4.03 71.98 0.29 2.08 16 17 O -0.31 -6.79 9.60 -93.19 -0.89 -7.68 16 18 C 0.12 2.57 6.68 22.51 0.15 2.72 16 19 C -0.17 -3.13 9.04 22.36 0.20 -2.93 16 20 C -0.10 -1.59 10.02 22.31 0.22 -1.37 16 21 C 0.06 1.06 7.30 22.37 0.16 1.22 16 22 F -0.14 -2.45 17.26 44.97 0.78 -1.67 16 23 C -0.10 -1.70 9.80 22.32 0.22 -1.48 16 24 C -0.06 -1.09 6.33 22.41 0.14 -0.95 16 25 Cl -0.05 -0.86 28.50 -2.72 -0.08 -0.94 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 29 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.41 12.86 8.54 -92.71 -0.79 12.07 16 31 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 1.69 7.61 -2.39 -0.02 1.68 16 34 H 0.07 1.70 7.63 -2.39 -0.02 1.68 16 35 H 0.16 2.70 6.30 -2.91 -0.02 2.68 16 36 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -64.42 339.62 3.80 -60.62 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.32 Total: 17.84 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 3.71 Total: -3.93 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -2.02 Total: -80.78 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.94 Total: -34.29 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.78 Total: -1.67 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -64.42 3.80 -60.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194640125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.287 kcal (2) G-P(sol) polarization free energy of solvation -64.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds