Wall clock time and date at job start Tue Mar 31 2020 10:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08988 * 109.47804 * 2 1 4 4 C 1.50701 * 109.46983 * 120.00296 * 2 1 3 5 5 H 1.08005 * 119.99935 * 116.61791 * 4 2 1 6 6 C 1.37877 * 120.00206 * 296.62390 * 4 2 1 7 7 N 1.31514 * 119.99641 * 351.52449 * 6 4 2 8 8 Si 1.86799 * 120.00131 * 171.80826 * 6 4 2 9 9 H 1.48505 * 109.46565 * 264.97209 * 8 6 4 10 10 H 1.48494 * 109.47297 * 24.97223 * 8 6 4 11 11 H 1.48497 * 109.46920 * 144.97545 * 8 6 4 12 12 N 1.46502 * 109.46800 * 239.99943 * 2 1 3 13 13 C 1.46503 * 120.00362 * 300.00504 * 12 2 1 14 14 C 1.34781 * 120.00180 * 120.00415 * 12 2 1 15 15 O 1.21287 * 119.99492 * 0.02562 * 14 12 2 16 16 C 1.50694 * 120.00297 * 179.97438 * 14 12 2 17 17 O 1.42896 * 109.47093 * 179.97438 * 16 14 12 18 18 C 1.35954 * 116.99914 * 179.97438 * 17 16 14 19 19 C 1.38730 * 120.01982 * 180.02562 * 18 17 16 20 20 C 1.38154 * 119.98520 * 180.02562 * 19 18 17 21 21 C 1.38438 * 120.04699 * 359.97438 * 20 19 18 22 22 F 1.35101 * 119.97672 * 179.97438 * 21 20 19 23 23 C 1.38541 * 120.04739 * 0.02562 * 21 20 19 24 24 Cl 1.73606 * 119.99581 * 180.02562 * 23 21 20 25 25 C 1.38272 * 120.00929 * 359.71647 * 23 21 20 26 26 H 1.09009 * 109.46613 * 65.89486 * 1 2 3 27 27 H 1.08992 * 109.47639 * 185.89884 * 1 2 3 28 28 H 1.08995 * 109.46632 * 305.90308 * 1 2 3 29 29 H 0.96998 * 119.99879 * 180.27648 * 7 6 4 30 30 H 1.09001 * 109.47202 * 89.99837 * 13 12 2 31 31 H 1.09003 * 109.47187 * 210.00516 * 13 12 2 32 32 H 1.09001 * 109.46679 * 329.99889 * 13 12 2 33 33 H 1.09000 * 109.47119 * 300.00271 * 16 14 12 34 34 H 1.09000 * 109.47150 * 60.00094 * 16 14 12 35 35 H 1.07993 * 120.00979 * 0.02562 * 19 18 17 36 36 H 1.08004 * 119.97137 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.02440 * 180.27837 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6074 -1.6194 1.1322 6 6 1.7576 -0.2003 2.4815 7 7 1.2049 0.9871 2.6006 8 14 2.1777 -1.1923 4.0076 9 1 0.9819 -1.9558 4.4462 10 1 3.2810 -2.1362 3.6963 11 1 2.6040 -0.2733 5.0934 12 7 2.0183 -0.6906 -1.1962 13 6 1.6642 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0866 1.1253 -1.8912 16 6 3.2959 -0.7463 -3.3136 17 8 4.0892 0.1521 -4.0917 18 6 4.6232 -0.3351 -5.2432 19 6 5.4043 0.4828 -6.0466 20 6 5.9462 -0.0129 -7.2168 21 6 5.7106 -1.3255 -7.5881 22 9 6.2407 -1.8087 -8.7330 23 6 4.9308 -2.1438 -6.7871 24 17 4.6368 -3.7900 -7.2538 25 6 4.3919 -1.6515 -5.6128 26 1 -0.3633 0.4198 -0.9382 27 1 -0.3634 -1.0221 0.1056 28 1 -0.3632 0.6026 0.8324 29 1 1.0153 1.3478 3.4808 30 1 0.7374 -2.1443 -1.9995 31 1 2.4627 -2.5820 -1.9865 32 1 1.5293 -2.5969 -0.4709 33 1 3.9015 -1.6025 -3.0166 34 1 2.4483 -1.0891 -3.9070 35 1 5.5889 1.5068 -5.7573 36 1 6.5546 0.6240 -7.8418 37 1 3.7876 -2.2905 -4.9859 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264027073.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:33 Heat of formation + Delta-G solvation = -91.974958 kcal Electronic energy + Delta-G solvation = -23298.704208 eV Core-core repulsion = 19403.381384 eV Total energy + Delta-G solvation = -3895.322824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.15120 -40.56298 -39.09103 -37.59898 -36.65730 -35.38643 -32.96951 -31.46139 -30.48864 -29.64400 -27.66964 -26.22557 -25.25594 -23.62223 -22.75004 -21.26162 -18.84375 -18.67072 -17.70467 -17.18807 -16.64633 -16.43418 -16.05563 -15.87791 -15.50636 -15.34558 -14.53859 -14.34801 -14.28869 -13.92250 -13.43082 -13.22547 -13.15404 -12.68322 -12.54431 -12.52354 -11.98318 -11.81328 -11.69892 -11.46177 -11.33587 -11.08212 -11.02099 -10.88395 -10.80772 -10.33283 -10.25615 -9.42096 -9.31937 -9.08550 -8.47659 -8.44267 -7.76940 -6.15518 -4.21103 0.59314 0.75964 1.62007 2.65374 3.06615 3.13136 3.22438 3.30572 3.32542 3.78246 3.93762 4.27711 4.34696 4.47936 4.66606 4.79960 4.96061 5.03800 5.11142 5.17533 5.20020 5.47792 5.54265 5.70144 5.76475 5.86313 6.16415 6.21647 6.62796 6.65638 6.89638 6.98936 7.24937 7.43825 7.60261 7.84968 8.06903 8.35109 8.72786 8.88379 9.44258 10.92136 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.002697 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.770449 B =10377.877501 C =10848.790581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.258 3.742 3 H 0.070 0.930 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.588 5.588 13 C 0.077 3.923 14 C 0.506 3.494 15 O -0.527 6.527 16 C 0.037 3.963 17 O -0.276 6.276 18 C 0.144 3.856 19 C -0.117 4.117 20 C -0.099 4.099 21 C 0.063 3.937 22 F -0.130 7.130 23 C -0.031 4.031 24 Cl -0.048 7.048 25 C -0.181 4.181 26 H 0.015 0.985 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.264 0.736 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.447 -7.285 -18.862 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.159 3.841 3 H 0.088 0.912 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.321 5.321 13 C -0.067 4.067 14 C 0.291 3.709 15 O -0.403 6.403 16 C -0.041 4.041 17 O -0.188 6.188 18 C 0.096 3.904 19 C -0.135 4.135 20 C -0.118 4.118 21 C 0.043 3.957 22 F -0.109 7.109 23 C -0.059 4.059 24 Cl -0.019 7.019 25 C -0.201 4.201 26 H 0.034 0.966 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.524 -6.498 -18.578 20.442 hybrid contribution 0.098 -1.228 0.663 1.399 sum 5.621 -7.726 -17.915 20.303 Atomic orbital electron populations 1.22024 0.98211 1.00142 0.99577 1.19009 0.90637 0.94989 0.79513 0.91239 1.21267 1.35303 1.10355 0.90200 0.92077 1.24896 0.95005 0.94669 0.98979 1.69957 1.42716 1.15357 1.24049 0.86509 0.78583 0.79956 0.82528 1.20567 1.19861 1.21102 1.48188 1.48850 1.11710 1.23329 1.21703 0.98874 0.83132 1.02946 1.19687 0.80263 0.87343 0.83639 1.90719 1.57138 1.16557 1.75912 1.22813 0.95499 0.92999 0.92832 1.86267 1.63170 1.38649 1.30695 1.18991 0.93241 0.91216 0.86927 1.20463 0.98330 1.01275 0.93476 1.20937 1.00551 0.93131 0.97208 1.17245 1.00256 0.92873 0.85325 1.91525 1.84473 1.88251 1.46651 1.20682 1.01374 0.87388 0.96459 1.98397 1.94820 1.16838 1.91813 1.21077 1.05500 0.95837 0.97658 0.96555 0.94648 0.90279 0.92583 0.93418 0.92980 0.89527 0.89066 0.89207 0.83073 0.82998 0.83294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.85 37.16 0.33 -2.86 16 2 C 0.26 6.32 2.52 -69.08 -0.17 6.15 16 3 H 0.07 2.01 6.89 -51.94 -0.36 1.65 16 4 C -0.53 -13.88 8.00 -34.44 -0.28 -14.15 16 5 H 0.06 1.55 7.22 -52.48 -0.38 1.17 16 6 C 0.07 1.81 5.24 -17.82 -0.09 1.72 16 7 N -0.88 -24.70 12.01 55.43 0.67 -24.03 16 8 Si 0.90 20.45 29.55 -169.99 -5.02 15.43 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.59 -11.72 2.75 -175.26 -0.48 -12.20 16 13 C 0.08 1.14 9.35 59.85 0.56 1.70 16 14 C 0.51 9.99 7.75 -10.99 -0.09 9.90 16 15 O -0.53 -12.92 15.83 -14.36 -0.23 -13.15 16 16 C 0.04 0.51 3.77 36.00 0.14 0.65 16 17 O -0.28 -4.10 9.67 -39.51 -0.38 -4.49 16 18 C 0.14 1.69 6.69 -39.24 -0.26 1.43 16 19 C -0.12 -1.16 9.99 -39.43 -0.39 -1.55 16 20 C -0.10 -0.86 10.02 -39.54 -0.40 -1.26 16 21 C 0.06 0.65 7.27 -39.40 -0.29 0.36 16 22 F -0.13 -1.40 16.83 2.25 0.04 -1.37 16 23 C -0.03 -0.33 6.32 -39.46 -0.25 -0.58 16 24 Cl -0.05 -0.48 28.61 -51.86 -1.48 -1.96 16 25 C -0.18 -1.88 8.82 -39.41 -0.35 -2.23 16 26 H 0.02 0.33 8.14 -51.92 -0.42 -0.10 16 27 H 0.03 0.73 7.86 -51.93 -0.41 0.32 16 28 H 0.08 1.96 6.84 -51.93 -0.36 1.61 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.58 6.44 -51.93 -0.33 0.25 16 32 H 0.09 1.38 6.96 -51.93 -0.36 1.02 16 33 H 0.09 1.04 6.91 -51.93 -0.36 0.68 16 34 H 0.09 0.98 7.64 -51.93 -0.40 0.58 16 35 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.15 0.91 8.06 -52.48 -0.42 0.48 16 37 H 0.15 1.31 6.30 -52.49 -0.33 0.98 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -31.30 334.92 -7.49 -38.80 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.11 Total: -1.36 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.54 Total: -0.72 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.18 Total: -36.23 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.61 Total: -17.63 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.48 Total: -1.96 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.30 -7.49 -38.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264027073.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.178 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds