Wall clock time and date at job start Tue Mar 31 2020 10:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08988 * 109.47804 * 2 1 4 4 C 1.50701 * 109.46983 * 120.00296 * 2 1 3 5 5 H 1.08005 * 119.99935 * 116.61791 * 4 2 1 6 6 C 1.37877 * 120.00206 * 296.62390 * 4 2 1 7 7 N 1.31514 * 119.99641 * 351.52449 * 6 4 2 8 8 Si 1.86799 * 120.00131 * 171.80826 * 6 4 2 9 9 H 1.48505 * 109.46565 * 264.97209 * 8 6 4 10 10 H 1.48494 * 109.47297 * 24.97223 * 8 6 4 11 11 H 1.48497 * 109.46920 * 144.97545 * 8 6 4 12 12 N 1.46502 * 109.46800 * 239.99943 * 2 1 3 13 13 C 1.46503 * 120.00362 * 300.00504 * 12 2 1 14 14 C 1.34781 * 120.00180 * 120.00415 * 12 2 1 15 15 O 1.21287 * 119.99492 * 0.02562 * 14 12 2 16 16 C 1.50694 * 120.00297 * 179.97438 * 14 12 2 17 17 O 1.42896 * 109.47093 * 179.97438 * 16 14 12 18 18 C 1.35954 * 116.99914 * 179.97438 * 17 16 14 19 19 C 1.38730 * 120.01982 * 180.02562 * 18 17 16 20 20 C 1.38154 * 119.98520 * 180.02562 * 19 18 17 21 21 C 1.38438 * 120.04699 * 359.97438 * 20 19 18 22 22 F 1.35101 * 119.97672 * 179.97438 * 21 20 19 23 23 C 1.38541 * 120.04739 * 0.02562 * 21 20 19 24 24 Cl 1.73606 * 119.99581 * 180.02562 * 23 21 20 25 25 C 1.38272 * 120.00929 * 359.71647 * 23 21 20 26 26 H 1.09009 * 109.46613 * 65.89486 * 1 2 3 27 27 H 1.08992 * 109.47639 * 185.89884 * 1 2 3 28 28 H 1.08995 * 109.46632 * 305.90308 * 1 2 3 29 29 H 0.96998 * 119.99879 * 180.27648 * 7 6 4 30 30 H 1.09001 * 109.47202 * 89.99837 * 13 12 2 31 31 H 1.09003 * 109.47187 * 210.00516 * 13 12 2 32 32 H 1.09001 * 109.46679 * 329.99889 * 13 12 2 33 33 H 1.09000 * 109.47119 * 300.00271 * 16 14 12 34 34 H 1.09000 * 109.47150 * 60.00094 * 16 14 12 35 35 H 1.07993 * 120.00979 * 0.02562 * 19 18 17 36 36 H 1.08004 * 119.97137 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.02440 * 180.27837 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6074 -1.6194 1.1322 6 6 1.7576 -0.2003 2.4815 7 7 1.2049 0.9871 2.6006 8 14 2.1777 -1.1923 4.0076 9 1 0.9819 -1.9558 4.4462 10 1 3.2810 -2.1362 3.6963 11 1 2.6040 -0.2733 5.0934 12 7 2.0183 -0.6906 -1.1962 13 6 1.6642 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0866 1.1253 -1.8912 16 6 3.2959 -0.7463 -3.3136 17 8 4.0892 0.1521 -4.0917 18 6 4.6232 -0.3351 -5.2432 19 6 5.4043 0.4828 -6.0466 20 6 5.9462 -0.0129 -7.2168 21 6 5.7106 -1.3255 -7.5881 22 9 6.2407 -1.8087 -8.7330 23 6 4.9308 -2.1438 -6.7871 24 17 4.6368 -3.7900 -7.2538 25 6 4.3919 -1.6515 -5.6128 26 1 -0.3633 0.4198 -0.9382 27 1 -0.3634 -1.0221 0.1056 28 1 -0.3632 0.6026 0.8324 29 1 1.0153 1.3478 3.4808 30 1 0.7374 -2.1443 -1.9995 31 1 2.4627 -2.5820 -1.9865 32 1 1.5293 -2.5969 -0.4709 33 1 3.9015 -1.6025 -3.0166 34 1 2.4483 -1.0891 -3.9070 35 1 5.5889 1.5068 -5.7573 36 1 6.5546 0.6240 -7.8418 37 1 3.7876 -2.2905 -4.9859 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264027073.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:32 Heat of formation + Delta-G solvation = -109.846581 kcal Electronic energy + Delta-G solvation = -23299.479180 eV Core-core repulsion = 19403.381384 eV Total energy + Delta-G solvation = -3896.097796 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.95012 -41.56456 -40.46104 -38.54358 -37.48283 -37.05836 -34.82760 -32.30515 -31.92570 -30.76502 -28.84620 -27.55812 -27.26028 -24.48611 -23.66405 -22.81567 -20.20025 -19.71326 -18.58908 -18.54666 -18.07061 -17.57523 -17.41953 -17.01031 -16.74820 -16.34533 -16.06802 -15.71304 -15.11587 -15.00180 -14.57783 -14.30274 -14.17338 -14.07504 -13.81016 -13.67739 -13.61564 -13.07859 -12.97334 -12.82029 -12.76295 -12.62146 -12.30484 -12.24477 -12.10102 -12.07743 -11.79446 -11.22085 -10.69678 -10.49581 -10.15681 -9.39881 -9.27734 -8.17061 -6.30443 -0.16243 -0.01810 0.85449 1.42631 1.43355 1.52768 1.58428 1.65788 2.31130 2.40291 2.66298 3.04125 3.13092 3.46487 3.60564 3.72413 3.91311 3.99626 4.05540 4.40897 4.42869 4.47258 4.72568 4.76050 4.76447 4.85557 4.96549 4.99482 5.01203 5.06152 5.41141 5.48200 5.51976 5.66202 5.95708 6.11582 6.14720 6.73675 6.78081 7.26723 7.43139 8.90208 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.002697 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.770449 B =10377.877501 C =10848.790581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.260 3.740 3 H 0.011 0.989 4 C -0.541 4.541 5 H 0.067 0.933 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.964 3.036 9 H -0.268 1.268 10 H -0.266 1.266 11 H -0.290 1.290 12 N -0.594 5.594 13 C 0.069 3.931 14 C 0.494 3.506 15 O -0.591 6.591 16 C 0.050 3.950 17 O -0.307 6.307 18 C 0.125 3.875 19 C -0.120 4.120 20 C -0.088 4.088 21 C 0.056 3.944 22 F -0.135 7.135 23 C -0.040 4.040 24 Cl -0.045 7.045 25 C -0.176 4.176 26 H 0.028 0.972 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.264 0.736 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.159 0.841 36 H 0.180 0.820 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 -9.793 -20.193 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.158 3.842 3 H 0.029 0.971 4 C -0.579 4.579 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.194 1.194 10 H -0.190 1.190 11 H -0.216 1.216 12 N -0.325 5.325 13 C -0.072 4.072 14 C 0.282 3.718 15 O -0.472 6.472 16 C -0.027 4.027 17 O -0.220 6.220 18 C 0.079 3.921 19 C -0.139 4.139 20 C -0.106 4.106 21 C 0.035 3.965 22 F -0.113 7.113 23 C -0.068 4.068 24 Cl -0.016 7.016 25 C -0.195 4.195 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.176 0.824 36 H 0.198 0.802 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.924 -9.069 -19.944 22.696 hybrid contribution 0.014 -0.430 0.977 1.067 sum 5.938 -9.499 -18.967 22.028 Atomic orbital electron populations 1.21803 0.96902 1.00755 0.99009 1.18576 0.91594 0.92539 0.81454 0.97081 1.21589 1.34999 1.10340 0.90975 0.91511 1.25757 0.95029 0.95489 1.02155 1.70107 1.44109 1.17029 1.24603 0.85463 0.78788 0.78411 0.78481 1.19361 1.18993 1.21620 1.48157 1.48669 1.13697 1.22026 1.22036 1.01843 0.79935 1.03410 1.20738 0.79189 0.86876 0.85046 1.90683 1.59293 1.19565 1.77623 1.22724 0.97272 0.92200 0.90545 1.86215 1.63991 1.39770 1.32018 1.19161 0.94279 0.92195 0.86447 1.20678 0.97943 1.01653 0.93589 1.21180 0.99888 0.92821 0.96753 1.17481 1.00292 0.93466 0.85221 1.91517 1.84543 1.88367 1.46890 1.20785 1.01669 0.87660 0.96689 1.98398 1.94815 1.16591 1.91793 1.21176 1.05275 0.95380 0.97674 0.95310 0.92708 0.93152 0.92693 0.90738 0.88714 0.90751 0.85993 0.85522 0.82368 0.80223 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.85 71.98 0.64 -5.12 16 2 C 0.26 13.08 2.52 44.24 0.11 13.19 16 3 H 0.01 0.69 6.89 -2.39 -0.02 0.67 16 4 C -0.54 -28.42 8.00 25.60 0.20 -28.21 16 5 H 0.07 3.35 7.22 -2.91 -0.02 3.33 16 6 C 0.02 0.84 5.24 84.65 0.44 1.28 16 7 N -0.92 -53.12 12.01 21.45 0.26 -52.86 16 8 Si 0.96 42.02 29.55 68.60 2.03 44.05 16 9 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 N -0.59 -23.27 2.75 -826.79 -2.28 -25.54 16 13 C 0.07 1.83 9.35 127.77 1.19 3.03 16 14 C 0.49 19.41 7.75 87.65 0.68 20.09 16 15 O -0.59 -30.29 15.83 15.98 0.25 -30.03 16 16 C 0.05 1.26 3.77 71.23 0.27 1.53 16 17 O -0.31 -8.74 9.67 -74.00 -0.72 -9.46 16 18 C 0.13 2.71 6.69 22.49 0.15 2.86 16 19 C -0.12 -2.18 9.99 22.37 0.22 -1.95 16 20 C -0.09 -1.32 10.02 22.30 0.22 -1.10 16 21 C 0.06 1.01 7.27 22.39 0.16 1.18 16 22 F -0.13 -2.63 16.83 44.97 0.76 -1.87 16 23 C -0.04 -0.75 6.32 22.35 0.14 -0.60 16 24 Cl -0.05 -0.80 28.61 -2.72 -0.08 -0.87 16 25 C -0.18 -3.16 8.82 22.38 0.20 -2.96 16 26 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.05 2.23 7.86 -2.39 -0.02 2.21 16 28 H 0.05 2.57 6.84 -2.39 -0.02 2.56 16 29 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.68 6.44 -2.39 -0.02 1.66 16 32 H 0.07 2.17 6.96 -2.39 -0.02 2.16 16 33 H 0.12 2.29 6.91 -2.39 -0.02 2.27 16 34 H 0.13 2.23 7.64 -2.39 -0.02 2.21 16 35 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.17 2.25 6.30 -2.91 -0.02 2.24 16 Total: -1.00 -72.43 334.92 5.97 -66.46 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.11 Total: 6.93 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 4.64 Total: 3.20 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -2.02 Total: -78.41 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -0.46 Total: -39.49 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.76 Total: -1.87 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.87 kcal Total: -72.43 5.97 -66.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264027073.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.382 kcal (2) G-P(sol) polarization free energy of solvation -72.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds