Wall clock time and date at job start Tue Mar 31 2020 10:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47009 * 2 1 4 4 C 1.52995 * 109.47168 * 240.00283 * 2 1 3 5 5 C 1.52995 * 109.47176 * 174.99881 * 4 2 1 6 6 H 1.08995 * 109.47450 * 305.00083 * 5 4 2 7 7 O 1.42900 * 109.47215 * 64.99943 * 5 4 2 8 8 C 1.50707 * 109.47291 * 184.99823 * 5 4 2 9 9 C 1.33388 * 125.19940 * 100.00009 * 8 5 4 10 10 C 1.38433 * 114.91766 * 179.97438 * 9 8 5 11 11 C 1.33389 * 114.92022 * 0.02562 * 10 9 8 12 12 S 1.75879 * 125.20222 * 279.97535 * 8 5 4 13 13 N 1.46501 * 109.46955 * 120.00165 * 2 1 3 14 14 C 1.34776 * 120.00152 * 274.99560 * 13 2 1 15 15 O 1.21287 * 119.99765 * 0.02562 * 14 13 2 16 16 C 1.50697 * 120.00265 * 179.97438 * 14 13 2 17 17 S 1.80998 * 109.47211 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00201 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99551 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00370 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99758 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00206 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47200 * 59.99822 * 22 20 18 24 24 H 1.48496 * 109.47110 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46786 * 300.00075 * 22 20 18 26 26 H 1.08997 * 109.47461 * 299.99789 * 1 2 3 27 27 H 1.08996 * 109.47419 * 60.00110 * 1 2 3 28 28 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47529 * 54.99410 * 4 2 1 30 30 H 1.09009 * 109.47150 * 294.99842 * 4 2 1 31 31 H 0.96700 * 114.00108 * 60.00439 * 7 5 4 32 32 H 1.08000 * 122.54563 * 359.95533 * 9 8 5 33 33 H 1.07998 * 122.53579 * 180.02562 * 10 9 8 34 34 H 1.07995 * 125.20209 * 180.26467 * 11 10 9 35 35 H 0.96998 * 119.99943 * 95.00661 * 13 2 1 36 36 H 1.08994 * 109.47382 * 300.01087 * 16 14 13 37 37 H 1.09011 * 109.46526 * 60.00792 * 16 14 13 38 38 H 0.96998 * 119.99596 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 1 3.8570 0.4359 -1.2677 7 8 4.1392 -1.3164 -0.2102 8 6 4.0570 -1.2157 -2.6044 9 6 4.3983 -0.5260 -3.6939 10 6 4.8233 -1.2966 -4.7626 11 6 4.8265 -2.6119 -4.5410 12 16 4.2698 -2.9356 -2.9042 13 7 2.0183 -0.6907 1.1962 14 6 2.1471 -0.0183 2.3571 15 8 1.8583 1.1584 2.4117 16 6 2.6488 -0.7289 3.5877 17 16 2.7092 0.4340 4.9734 18 6 3.3125 -0.6312 6.2407 19 1 3.5217 -1.6676 6.0207 20 6 3.5187 -0.1383 7.5218 21 7 3.2632 1.1248 7.7900 22 14 4.1590 -1.2675 8.8651 23 1 5.4856 -1.8049 8.4696 24 1 4.2912 -0.5041 10.1320 25 1 3.2083 -2.3913 9.0618 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6053 -0.2617 -2.1370 30 1 1.7516 -1.7715 -1.2056 31 1 3.9206 -2.2581 -0.1872 32 1 4.3468 0.5518 -3.7391 33 1 5.1290 -0.8654 -5.7044 34 1 5.1295 -3.3629 -5.2554 35 1 2.2491 -1.6318 1.1526 36 1 1.9760 -1.5507 3.8325 37 1 3.6481 -1.1214 3.3985 38 1 3.4070 1.4691 8.6853 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269826775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:42 Heat of formation + Delta-G solvation = -60.832939 kcal Electronic energy + Delta-G solvation = -21086.371213 eV Core-core repulsion = 17760.655691 eV Total energy + Delta-G solvation = -3325.715522 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.67754 -38.57029 -37.24310 -35.19242 -32.37863 -32.15410 -30.79441 -28.54486 -28.02702 -25.43209 -24.85598 -22.77032 -21.51488 -20.24886 -19.73078 -18.21509 -17.74075 -16.51809 -16.41829 -15.95410 -15.81015 -14.98050 -14.77477 -14.73610 -14.26122 -13.98496 -13.65539 -13.21767 -13.09446 -13.05480 -12.75775 -12.52216 -12.47323 -12.10380 -11.93497 -11.81945 -11.68328 -11.13254 -11.01542 -10.99677 -10.96525 -10.71931 -10.49098 -9.76304 -9.25519 -9.06394 -9.00992 -8.83710 -8.71283 -8.16510 -6.42935 -6.16398 -3.85975 0.59627 1.21859 1.59836 2.36167 3.12130 3.24683 3.27122 3.31026 3.36190 3.80053 4.04733 4.15280 4.25956 4.57799 4.69235 4.74723 4.89898 5.11498 5.17211 5.18478 5.26806 5.30861 5.36840 5.46087 5.56224 5.65434 5.74455 5.76138 5.89493 6.00043 6.05928 6.09120 6.21345 6.25399 6.79930 7.25065 7.64378 7.86183 8.40324 8.76757 9.28756 10.91017 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.002690 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.343764 B =10405.481577 C =11211.154282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 H 0.089 0.911 4 C -0.154 4.154 5 C 0.179 3.821 6 H 0.119 0.881 7 O -0.536 6.536 8 C -0.206 4.206 9 C -0.133 4.133 10 C -0.133 4.133 11 C -0.214 4.214 12 S 0.103 5.897 13 N -0.722 5.722 14 C 0.537 3.463 15 O -0.523 6.523 16 C -0.152 4.152 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.071 0.929 20 C 0.073 3.927 21 N -0.869 5.869 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.367 0.633 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.164 0.836 35 H 0.394 0.606 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -8.898 -26.725 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.107 0.893 4 C -0.193 4.193 5 C 0.117 3.883 6 H 0.136 0.864 7 O -0.340 6.340 8 C -0.324 4.324 9 C -0.163 4.163 10 C -0.164 4.164 11 C -0.349 4.349 12 S 0.366 5.634 13 N -0.376 5.376 14 C 0.323 3.677 15 O -0.398 6.398 16 C -0.302 4.302 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.200 1.200 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.214 0.786 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.181 0.819 35 H 0.228 0.772 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.956 -7.507 -25.523 26.621 hybrid contribution 0.914 -1.886 -0.455 2.145 sum -0.041 -9.393 -25.978 27.625 Atomic orbital electron populations 1.22193 0.95367 1.01974 1.02711 1.20761 0.93743 0.97638 0.83507 0.89334 1.22671 0.95247 1.02244 0.99123 1.20441 0.91288 0.96660 0.79876 0.86385 1.86806 1.75435 1.24833 1.46882 1.25568 1.08806 0.96622 1.01411 1.20133 1.02239 1.01483 0.92472 1.20205 1.02923 0.92801 1.00464 1.25626 1.09517 1.00146 0.99648 1.84188 1.64542 1.05267 1.09383 1.45947 1.68872 1.13657 1.09163 1.20206 0.76563 0.87141 0.83785 1.90685 1.48725 1.15812 1.84571 1.23510 1.03697 1.04652 0.98377 1.85360 1.86230 1.13137 0.98773 1.22834 1.50885 0.98117 0.96400 0.91045 1.24986 0.95170 0.95522 0.97941 1.70014 1.45638 1.13218 1.21521 0.86236 0.79324 0.80025 0.79983 1.19950 1.20856 1.19989 0.91457 0.92022 0.92678 0.89141 0.90798 0.78603 0.84068 0.84187 0.81862 0.77183 0.89564 0.89152 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.15 1.65 2.57 -67.93 -0.17 1.48 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 4 C -0.15 -1.19 4.51 -26.74 -0.12 -1.31 16 5 C 0.18 1.59 3.41 -27.88 -0.10 1.49 16 6 H 0.12 1.15 8.12 -51.93 -0.42 0.72 16 7 O -0.54 -5.58 11.20 -35.23 -0.39 -5.98 16 8 C -0.21 -1.72 5.48 -36.00 -0.20 -1.92 16 9 C -0.13 -1.05 10.04 -41.20 -0.41 -1.47 16 10 C -0.13 -0.96 10.18 -41.20 -0.42 -1.38 16 11 C -0.21 -1.50 11.23 29.04 0.33 -1.17 16 12 S 0.10 0.77 22.64 -107.50 -2.43 -1.67 16 13 N -0.72 -9.47 3.87 -53.81 -0.21 -9.68 16 14 C 0.54 10.12 7.81 -10.99 -0.09 10.03 16 15 O -0.52 -11.95 15.53 5.55 0.09 -11.86 16 16 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 17 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 18 C -0.53 -15.46 9.50 30.94 0.29 -15.17 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.56 13.22 55.49 0.73 -25.82 16 22 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.37 2.74 8.20 45.56 0.37 3.12 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.39 4.11 7.53 -40.82 -0.31 3.80 16 36 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 37 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 38 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 352.48 15.07 5.31 5.31 Total: -1.00 -35.63 352.48 -9.07 -44.70 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.52 Total: 3.93 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.41 Total: -11.69 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.53 Total: -35.51 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.31 Total: -17.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -4.65 Total: -5.58 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.63 -9.07 -44.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269826775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.137 kcal (2) G-P(sol) polarization free energy of solvation -35.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds